BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0594100 Os05g0594100|AK106130
(277 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G42050.1 | chr5:16815630-16816932 FORWARD LENGTH=350 250 6e-67
AT3G27090.1 | chr3:9990020-9991407 FORWARD LENGTH=297 243 8e-65
AT5G01660.1 | chr5:244504-248442 REVERSE LENGTH=657 103 1e-22
AT3G11000.2 | chr3:3447847-3450283 FORWARD LENGTH=608 102 2e-22
AT5G61910.1 | chr5:24861091-24863729 REVERSE LENGTH=739 94 6e-20
AT2G32910.1 | chr2:13959685-13961989 FORWARD LENGTH=692 88 4e-18
AT2G35140.1 | chr2:14813990-14816808 FORWARD LENGTH=880 88 6e-18
>AT5G42050.1 | chr5:16815630-16816932 FORWARD LENGTH=350
Length = 349
Score = 250 bits (638), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 115/145 (79%), Positives = 130/145 (89%), Gaps = 1/145 (0%)
Query: 130 LPASESVPKEEAIGGYIFVCNNETMEENLKRQLFGLPSRYRDSVRAIRPGLPLFLYNYST 189
LP +E++P+ E IGGYIFVCNN+TMEENLKRQLFGLP RYRDSVRAI PGLPLFLYNYST
Sbjct: 204 LPPAEALPRNETIGGYIFVCNNDTMEENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYST 263
Query: 190 HQLHGIFEATSFGGSNIDPGAWEDSKCPGGESRFPAQVRVATRKICEPLEEDAFRPVLHH 249
HQLHGI+EA SFGG+NI+ A+ED KCP GESRFPAQVR TRK+C PLEED+FRP+LHH
Sbjct: 264 HQLHGIYEAASFGGTNIELNAFEDKKCP-GESRFPAQVRAITRKVCLPLEEDSFRPILHH 322
Query: 250 YDGPKFRLELTVAEALSLLDIFAEK 274
YDGPKFRLEL+V E LSLLDIFA++
Sbjct: 323 YDGPKFRLELSVPEVLSLLDIFADQ 347
>AT3G27090.1 | chr3:9990020-9991407 FORWARD LENGTH=297
Length = 296
Score = 243 bits (620), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 109/141 (77%), Positives = 125/141 (88%), Gaps = 1/141 (0%)
Query: 130 LPASESVPKEEAIGGYIFVCNNETMEENLKRQLFGLPSRYRDSVRAIRPGLPLFLYNYST 189
LPASE++P+ E +GGYIFVCNN+TM+E++KR LFGLP RYRDSVRAI PGLPLFLYNY+T
Sbjct: 150 LPASETLPRNEVLGGYIFVCNNDTMQEDMKRHLFGLPPRYRDSVRAITPGLPLFLYNYTT 209
Query: 190 HQLHGIFEATSFGGSNIDPGAWEDSKCPGGESRFPAQVRVATRKICEPLEEDAFRPVLHH 249
HQLHGIFEAT+FGG+NID AWED KC GESRFPAQVR+ RKIC+ LEED+FRPVLHH
Sbjct: 210 HQLHGIFEATTFGGTNIDATAWEDKKCK-GESRFPAQVRIRVRKICKALEEDSFRPVLHH 268
Query: 250 YDGPKFRLELTVAEALSLLDI 270
YDGPKFRLEL+V E L LLD+
Sbjct: 269 YDGPKFRLELSVPETLDLLDL 289
>AT5G01660.1 | chr5:244504-248442 REVERSE LENGTH=657
Length = 656
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/139 (42%), Positives = 78/139 (56%), Gaps = 9/139 (6%)
Query: 142 IGGYIFVCNNETMEENLKRQLFGLPSRYRDSVRAIRPGLPLFLYNYSTHQLHGIFEATSF 201
+GG +F C T++E + +QLFGLPS + V+ I GLPLFL+NYS LHGIFEA
Sbjct: 18 LGGVVFGCTKNTIKECMSKQLFGLPSNHYPYVQKIDIGLPLFLFNYSDRTLHGIFEAAGC 77
Query: 202 GGSNIDPGAWEDSKCPGGE-SRFPAQVRVATRKICEPLEEDAFRPVL--HHYDGPKFRLE 258
G N DP W G E + +PAQV ++ R CEPL E+ F+P + ++Y F E
Sbjct: 78 GQLNFDPYGWTSD---GSERTSYPAQVPISVRLQCEPLSEEKFKPAIADNYYSSHHFWFE 134
Query: 259 L---TVAEALSLLDIFAEK 274
L + LL FA K
Sbjct: 135 LDHFQTRKLTCLLTSFAVK 153
>AT3G11000.2 | chr3:3447847-3450283 FORWARD LENGTH=608
Length = 607
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/138 (43%), Positives = 78/138 (56%), Gaps = 8/138 (5%)
Query: 138 KEEAIGGYIFVCNNETMEENLKRQLFGLPSRYRDSVRAIRPGLPLFLYNYSTHQLHGIFE 197
K+ + G IF C T++E + LFGLP+ + ++ I PGL LFL+NYS LHGIFE
Sbjct: 126 KKGDLCGVIFGCKFSTIKECYAKNLFGLPAPHMAYIKNIDPGLTLFLFNYSDRTLHGIFE 185
Query: 198 ATSFGGSNIDPGAWEDSKCPGGE--SRFPAQVRVATRKICEPLEEDAFRPVL--HHYDGP 253
A S G NID AW P G S +PAQV+V R CEPL E+ F PV+ ++ D
Sbjct: 186 AASEGKLNIDSKAWS----PNGTDPSPYPAQVKVRVRVRCEPLPEEKFSPVIVENYNDDK 241
Query: 254 KFRLELTVAEALSLLDIF 271
F EL + LL +F
Sbjct: 242 MFWFELDRGQTNKLLRLF 259
>AT5G61910.1 | chr5:24861091-24863729 REVERSE LENGTH=739
Length = 738
Score = 94.4 bits (233), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 80/133 (60%), Gaps = 9/133 (6%)
Query: 140 EAIGGYIFVCNNETMEENLKRQLFGLPSRYRDSVRAIRPGLPLFLYNYSTHQLHGIFEAT 199
E + GYIF+CN T + + ++FG+P +D V +I+PG+ LFLY++ L+G++EAT
Sbjct: 59 EQLPGYIFMCNGRTKTDCYRYRVFGIPRGGKDVVESIKPGMKLFLYDFEKRLLYGVYEAT 118
Query: 200 SFGGSNIDPGAWEDSKCPGGESRFPAQVRVATRKICEPLEEDAFRPVLH-HYDGPKFRLE 258
G +I+P A+ E ++PAQV C PL E+ F+ ++ +Y G KF+ E
Sbjct: 119 VGGRLDIEPEAF--------EGKYPAQVGFRIVMNCLPLTENTFKSAIYENYKGSKFKQE 170
Query: 259 LTVAEALSLLDIF 271
L+ + +SLL +F
Sbjct: 171 LSPHQVMSLLSLF 183
>AT2G32910.1 | chr2:13959685-13961989 FORWARD LENGTH=692
Length = 691
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 77/137 (56%), Gaps = 10/137 (7%)
Query: 137 PKEEAIGGYIFVCNNETMEENLKRQLFGLPSRYRDSVRAIRPGLPLFLYNYSTHQLHGIF 196
P + IGG IF+CN +T + + + G+ + +D V+ I+PGL LFLY+Y L+GIF
Sbjct: 314 PGKVKIGGLIFMCNTKTRPDCFRFSVMGVQEKRKDFVKGIKPGLKLFLYDYDLKLLYGIF 373
Query: 197 EATSFGGSNIDPGAWEDSKCPGGESRFPAQVRVATRKICEPLEEDAF-RPVLHHYDGP-K 254
EA+S GG ++ A+ GG FPAQVR C PL E F + ++ +Y+ K
Sbjct: 374 EASSAGGMKLERNAF------GGS--FPAQVRFKVFSDCIPLAESQFKKAIIENYNNKNK 425
Query: 255 FRLELTVAEALSLLDIF 271
F+ ELT + L +F
Sbjct: 426 FKTELTHKQVFKLKKLF 442
>AT2G35140.1 | chr2:14813990-14816808 FORWARD LENGTH=880
Length = 879
Score = 87.8 bits (216), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 74/133 (55%), Gaps = 7/133 (5%)
Query: 144 GYIFVCNNETMEENLKRQLFGLPSRYRDSVRAIRPGLPLFLYNYSTHQLHGIFEATSFGG 203
G IF+ NN T +E L R+LFGLP V+ ++ G+ LFL+ + +LHG+F+A S G
Sbjct: 23 GAIFMSNNSTRKECLSRKLFGLPIGLGGFVKHVKAGMMLFLFEFEKRELHGVFQACSDGA 82
Query: 204 SNIDPGAWEDSKCPGGESRFPAQVRVATRKICEPLEEDAFRPVLH--HYDGPKFRLELTV 261
NI+P A+ S +FPAQV+ + C PL E F +H ++ KF L+
Sbjct: 83 INIEPNAFRSSG-----KQFPAQVKFTEKWRCRPLCESEFGNAIHENYFTPTKFNFGLSK 137
Query: 262 AEALSLLDIFAEK 274
A+ LL +F+ K
Sbjct: 138 AQVQRLLKLFSMK 150
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.138 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,377,456
Number of extensions: 162924
Number of successful extensions: 294
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 286
Number of HSP's successfully gapped: 7
Length of query: 277
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 180
Effective length of database: 8,447,217
Effective search space: 1520499060
Effective search space used: 1520499060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)