Os01g0550300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Gda-1 protein.
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Os01g0550300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Gda-1 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.92 | 0.289 | 14.6 | 0.813 | 0.396 | 0.328 | -0.347 | -1.7 | 0.103 | 12.7 | 30.46 | 1010 | -- | -- |
| 42.31 | 0.303 | 14.6 | 1 | 0.372 | 0.332 | -0.11 | -- | 0.162 | 12.2 | 38.08 | 940 | -- | -- |
| 38.2 | 0.288 | 14.6 | 0.829 | 0.384 | 0.304 | -- | -1.59 | 0.106 | 12.4 | 30.46 | 920 | -- | -- |
| 42.33 | 0.303 | 14.6 | 0.989 | 0.378 | 0.345 | -- | -- | 0.164 | 12.3 | 38.07 | 944 | -- | -- |
| 44.12 | 0.309 | 14.6 | 0.927 | -- | 0.441 | -- | -0.54 | 0.18 | -- | 29.89 | 206 | -- | -- |
| 44.53 | 0.313 | 14.6 | 1.01 | 0.348 | -- | -0.218 | -- | 0.219 | 13.9 | -- | -- | -- | -- |
| 44.7 | 0.313 | 14.6 | 1 | 0.347 | -- | -- | -- | 0.218 | 13.7 | -- | -- | -- | -- |
| 44.65 | 0.311 | 14.6 | 0.984 | -- | 0.474 | -- | -- | 0.176 | -- | 28.82 | 206 | -- | -- |
| 65.7 | 0.378 | 14.6 | -- | 0.388 | 0.479 | -- | -- | 0.0434 | 11.6 | 30.16 | 1012 | -- | -- |
| 52.03 | 0.337 | 14.6 | 0.99 | -- | -- | -- | -- | 0.21 | -- | -- | -- | -- | -- |
| 71.27 | 0.395 | 14.6 | -- | 0.329 | -- | -- | -- | 0.106 | 13.7 | -- | -- | -- | -- |
| 67.83 | 0.384 | 14.6 | -- | -- | 0.438 | -- | -- | 0.0582 | -- | 12.61 | 233 | -- | -- |
| 77.88 | 0.412 | 14.6 | -- | -- | -- | -- | -- | 0.1 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.31 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 3 |
| 15 | 36.38 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 9 |
| 71 | 37.27 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 8 |
| 128 | 37.66 | radiation | 40 | 1440 | < th | dose independent | rect. | 15 | 18 |
| 145 | 37.79 | radiation | 10 | 720 | > th | dose dependent | rect. | 15 | 17 |
| 150 | 37.81 | temperature | 20 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 155 | 37.86 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 2 |
| 170 | 37.90 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 5 |
| 176 | 37.92 | radiation | 30 | 1440 | > th | dose dependent | rect. | 15 | 20 |
| 195 | 38.00 | humidity | 90 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 211 | 38.07 | temperature | 25 | 720 | < th | dose dependent | sin | 4 | NA |
| 216 | 38.08 | radiation | 30 | 1440 | > th | dose independent | rect. | 15 | 20 |
| 218 | 38.10 | radiation | 30 | 1440 | > th | dose dependent | sin | 11 | NA |
| 242 | 38.16 | radiation | 30 | 1440 | > th | dose dependent | rect. | 9 | 1 |
| 248 | 38.18 | radiation | 30 | 1440 | > th | dose dependent | rect. | 8 | 3 |
| 284 | 38.23 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 1 |
| 288 | 38.24 | temperature | 20 | 720 | > th | dose independent | sin | 7 | NA |
| 290 | 38.24 | temperature | 10 | 720 | > th | dose dependent | sin | 7 | NA |
| 387 | 38.43 | radiation | 40 | 1440 | < th | dose independent | rect. | 9 | 1 |
| 412 | 38.48 | radiation | 30 | 1440 | > th | dose independent | sin | 11 | NA |
| 442 | 38.54 | radiation | 30 | 1440 | < th | dose independent | sin | 12 | NA |
| 443 | 38.54 | radiation | 30 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 458 | 38.57 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 3 |
| 487 | 38.64 | radiation | 40 | 1440 | < th | dose independent | rect. | 8 | 3 |
| 490 | 38.64 | radiation | 40 | 1440 | < th | dose independent | rect. | 2 | 9 |
| 510 | 38.65 | radiation | 40 | 1440 | < th | dose independent | rect. | 4 | 7 |
| 525 | 38.67 | radiation | 40 | 1440 | < th | dose independent | rect. | 6 | 5 |
| 529 | 38.67 | radiation | 40 | 1440 | < th | dose independent | rect. | 18 | 17 |
| 536 | 38.68 | radiation | 40 | 1440 | < th | dose independent | rect. | 20 | 15 |
| 543 | 38.69 | radiation | 30 | 1440 | > th | dose independent | rect. | 7 | 5 |
| 579 | 38.72 | radiation | 30 | 720 | < th | dose dependent | rect. | 14 | 5 |
| 631 | 38.78 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 15 |
| 644 | 38.79 | temperature | 25 | 270 | < th | dose independent | rect. | 8 | 7 |
| 693 | 38.80 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 1 |
| 705 | 38.81 | wind | 7 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 755 | 38.87 | wind | 5 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 766 | 38.87 | radiation | 40 | 1440 | < th | dose dependent | rect. | 15 | 19 |
| 769 | 38.88 | temperature | 20 | 720 | < th | dose independent | sin | 6 | NA |
| 778 | 38.89 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 4 |
| 779 | 38.89 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 5 |
| 811 | 38.91 | wind | 5 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 910 | 38.97 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 11 |
| 928 | 38.99 | humidity | 90 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 929 | 38.99 | radiation | 10 | 720 | > th | dose independent | rect. | 15 | 2 |
| 949 | 39.02 | wind | 7 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 950 | 39.02 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 1 |