Os05g0164900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Galactose oxidase, central domain containing protein.
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Os05g0164900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Galactose oxidase, central domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.34 | 0.337 | 8.06 | 2.92 | 0.911 | -0.997 | -0.153 | 2.54 | 0.614 | 13.8 | 21.93 | 1857 | -- | -- |
| 65.51 | 0.377 | 8.13 | 2.8 | 0.72 | -1.71 | -0.51 | -- | 0.431 | 13.4 | 18.97 | 3430 | -- | -- |
| 51.42 | 0.334 | 8.06 | 2.91 | 0.911 | -1 | -- | 2.54 | 0.614 | 13.8 | 21.91 | 1859 | -- | -- |
| 58.52 | 0.356 | 8.13 | 2.91 | 0.899 | -1.98 | -- | -- | 0.524 | 13.8 | 18.74 | 8015 | -- | -- |
| 95.58 | 0.455 | 8.04 | 2.99 | -- | -1.04 | -- | 2.53 | 0.648 | -- | 22.1 | 2398 | -- | -- |
| 105.37 | 0.481 | 8.23 | 1.67 | 0.93 | -- | -0.218 | -- | 0.0761 | 13.7 | -- | -- | -- | -- |
| 105.56 | 0.481 | 8.23 | 1.67 | 0.93 | -- | -- | -- | 0.0749 | 13.7 | -- | -- | -- | -- |
| 106.62 | 0.481 | 8.13 | 3.05 | -- | -2.02 | -- | -- | 0.55 | -- | 18.73 | 9617 | -- | -- |
| 167.3 | 0.602 | 8.31 | -- | 0.917 | 0.55 | -- | -- | -0.299 | 14.3 | 20.6 | 18734 | -- | -- |
| 158.26 | 0.588 | 8.24 | 1.63 | -- | -- | -- | -- | 0.0542 | -- | -- | -- | -- | -- |
| 178.68 | 0.625 | 8.27 | -- | 0.9 | -- | -- | -- | -0.111 | 13.6 | -- | -- | -- | -- |
| 196.56 | 0.653 | 8.35 | -- | -- | 0.824 | -- | -- | -0.414 | -- | 22.02 | 47520 | -- | -- |
| 228.17 | 0.705 | 8.28 | -- | -- | -- | -- | -- | -0.126 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.82 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 13 |
| 12 | 52.13 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 15 |
| 14 | 52.15 | humidity | 90 | 14400 | > th | dose dependent | sin | 7 | NA |
| 23 | 52.23 | temperature | 25 | 1440 | < th | dose dependent | sin | 9 | NA |
| 24 | 52.24 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 9 |
| 44 | 52.36 | temperature | 25 | 4320 | < th | dose independent | rect. | 11 | 3 |
| 58 | 52.43 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 3 |
| 89 | 52.58 | temperature | 10 | 1440 | > th | dose dependent | rect. | 2 | 3 |
| 98 | 52.64 | temperature | 25 | 4320 | < th | dose independent | rect. | 12 | 1 |
| 155 | 52.91 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 13 |
| 163 | 52.95 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 4 |
| 181 | 53.03 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 7 |
| 184 | 53.04 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 6 |
| 186 | 53.04 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 9 |
| 198 | 53.08 | temperature | 25 | 4320 | > th | dose independent | rect. | 12 | 2 |
| 255 | 53.24 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 10 |
| 332 | 53.54 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 389 | 53.70 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 417 | 53.81 | temperature | 15 | 1440 | > th | dose dependent | sin | 10 | NA |
| 585 | 54.30 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 636 | 54.48 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 668 | 54.58 | radiation | 30 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 730 | 54.78 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 731 | 54.78 | radiation | 30 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 783 | 54.94 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 826 | 55.08 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 6 |
| 828 | 55.08 | wind | 7 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 853 | 55.16 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 855 | 55.16 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 14 |
| 887 | 55.25 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 4 |
| 918 | 55.31 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 6 |
| 929 | 55.34 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 14 |
| 967 | 55.42 | wind | 7 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 968 | 55.42 | temperature | 20 | 1440 | > th | dose independent | rect. | 2 | 9 |
| 990 | 55.48 | radiation | 30 | 14400 | > th | dose independent | rect. | 7 | 1 |