Os01g0165200 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0165200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : STAT protein family protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	5.61	(0.0324)	R²	:	0.733
β₁	:	-3.68	(0.125)	R²_dD	:	0.607	R²_D	:	0.372
β₂	:	1.15	(0.0756)	R²_dC	:	0.137	R²_C	:	0.154
β₃	:	2.06	(0.123)	R²_dE	:	0.207	R²_E	:	0.0126
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	-0.193	(0.0729)	R²_dN8	:	0.00633	R²_N8	:	-0.0353
σ	:	0.594
deviance	:	162.93
__

_____

C
peak time of C	:	23.9
E
wheather	:	temperature
threshold	:	18.15
memory length	:	1893
response mode	:	> th
dose dependency	:	dose dependent
G
type of G	:	no
peak or start time of G	:	--
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
162.66	0.599	5.6	-3.54	1.21	2.22	-0.43	0.658	-0.15	23.7	16.47	1735	--	--
162.53	0.594	5.61	-3.63	1.13	2.12	-0.3	--	-0.17	23.9	17.37	1859	--	--
162.86	0.594	5.6	-3.57	1.17	2.09	--	0.425	-0.162	23.8	17.66	1857	--	--
162.93	0.594	5.61	-3.68	1.15	2.06	--	--	-0.193	23.9	18.15	1893	--	--
209.82	0.675	5.58	-3.51	--	2.54	--	0.907	-0.174	--	17.76	918	--	--
260.92	0.757	5.52	-2.94	1.27	--	-0.356	--	0.255	23.5	--	--	--	--
261.47	0.757	5.52	-2.92	1.27	--	--	--	0.256	23.5	--	--	--	--
208.57	0.673	5.6	-3.71	--	2.7	--	--	-0.225	--	17.41	916	--	--
465.51	1	5.47	--	1.01	0.897	--	--	0.448	23.7	21.9	881	--	--
362.42	0.89	5.49	-2.89	--	--	--	--	0.269	--	--	--	--	--
486.45	1.03	5.44	--	1.24	--	--	--	0.581	23.3	--	--	--	--
521.88	1.06	5.46	--	--	1.4	--	--	0.383	--	21.98	880	--	--
582.43	1.13	5.41	--	--	--	--	--	0.59	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	160.47	temperature	20	1440	> th	dose dependent	rect.	6	2
4	161.02	temperature	30	1440	< th	dose dependent	rect.	5	4
6	161.15	temperature	30	1440	< th	dose dependent	rect.	6	2
14	161.82	temperature	15	1440	> th	dose dependent	rect.	4	6
36	162.43	temperature	15	1440	> th	dose dependent	sin	5	NA
38	162.48	temperature	15	1440	> th	dose dependent	rect.	1	13
40	162.53	temperature	15	1440	> th	dose dependent	rect.	2	11
109	163.38	temperature	15	1440	> th	dose dependent	rect.	23	20
117	163.44	temperature	15	1440	> th	dose dependent	rect.	16	22
120	163.45	temperature	15	1440	> th	dose dependent	rect.	18	20
250	163.88	temperature	30	1440	< th	dose dependent	sin	5	NA
287	163.99	temperature	15	1440	> th	dose dependent	no	NA	NA
339	164.15	temperature	15	1440	> th	dose dependent	rect.	5	23
381	164.32	temperature	15	1440	> th	dose dependent	rect.	8	23
428	164.51	temperature	30	1440	< th	dose dependent	rect.	16	19
495	164.70	temperature	30	1440	< th	dose dependent	rect.	1	19
761	165.39	temperature	30	1440	< th	dose dependent	no	NA	NA
777	165.41	temperature	30	1440	< th	dose dependent	rect.	5	23
871	165.77	temperature	10	4320	> th	dose dependent	rect.	17	7
922	165.93	temperature	30	4320	< th	dose dependent	rect.	18	6
932	165.97	temperature	15	4320	> th	dose dependent	rect.	21	3
935	165.98	temperature	30	4320	< th	dose dependent	rect.	21	3