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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0563700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.78 (0.0413) R2 : 0.788
β1 : 0.788 (0.166) R2dD : 0.0223 R2D : -0.24
β2 : 1.05 (0.0791) R2dC : 0.0831 R2C : 0.0203
β3 : 0.935 (0.161) R2dE : 0.0548 R2E : 0.174
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -8.43 (0.443) R2dD*E : 0.588 R2D*E : 0.667
γ1 : 0.097 (0.0812) R2dN8 : 0.00128 R2N8 : -0.116
σ : 0.591
deviance : 161.27
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_____
C
peak time of C : 15.1
E
wheather : temperature
threshold : 20
memory length : 4281
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 21.2
open length of G : 0.217

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
160.09 0.594 4.77 0.804 1.05 0.944 0.692 -8.5 0.108 15.2 19.99 4310 21.2 0.35
292.77 0.797 5.1 0.776 1.18 2.97 0.454 -- 0.302 15.4 20.7 5804 21.2 0.0501
161.27 0.591 4.78 0.788 1.05 0.935 -- -8.43 0.097 15.1 20 4281 21.2 0.217
246.1 0.731 5.11 1.13 1.42 3.6 -- -- 0.144 14.8 19.68 31260 19.6 0.907
223.87 0.697 4.77 0.864 -- 1.02 -- -8.57 0.108 -- 19.96 4348 21.2 0.25
457.87 1 5.45 -2.27 1.28 -- -0.394 -- -1.13 15.2 -- -- -- --
458.37 1 5.46 -2.28 1.28 -- -- -- -1.13 15.2 -- -- -- --
288.23 0.791 5.17 2.27 -- 4.67 -- -- 0.545 -- 16.69 47233 17.8 8.84
245.29 0.729 5.33 -- 1.13 3.4 -- -- -0.337 15.2 16.09 47520 20.4 1.68
550.68 1.1 5.46 -2.33 -- -- -- -- -1.17 -- -- -- -- --
595.08 1.14 5.4 -- 1.32 -- -- -- -0.88 15.2 -- -- -- --
311.92 0.823 5.28 -- -- 3.34 -- -- -0.393 -- 14.2 47520 17.7 11.8
694.09 1.23 5.4 -- -- -- -- -- -0.908 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 141.78 radiation 30 14400 > th dose independent rect. 16 16
2 143.86 radiation 40 14400 < th dose independent rect. 2 6
5 144.00 radiation 30 14400 > th dose dependent rect. 16 16
6 144.24 radiation 40 14400 < th dose independent rect. 22 10
9 144.37 radiation 40 14400 < th dose independent rect. 17 15
19 146.37 radiation 30 14400 > th dose independent rect. 7 1
34 148.60 radiation 30 14400 > th dose dependent rect. 7 1
149 159.07 wind 7 43200 > th dose dependent rect. 24 1
153 160.01 radiation 30 43200 < th dose independent rect. 16 10
156 160.16 temperature 15 43200 < th dose independent rect. 5 2
177 160.85 radiation 30 43200 < th dose independent rect. 16 4
178 160.85 radiation 30 43200 < th dose independent rect. 16 7
195 161.15 radiation 30 43200 < th dose independent rect. 16 1
198 161.44 temperature 15 43200 < th dose independent rect. 24 4
200 161.63 temperature 15 43200 < th dose dependent rect. 2 1
204 161.86 temperature 15 43200 < th dose independent rect. 24 9
205 161.88 temperature 15 43200 < th dose independent rect. 1 1
206 161.88 temperature 15 43200 < th dose independent rect. 24 7
208 161.95 temperature 15 43200 > th dose independent rect. 3 1
218 162.32 temperature 15 43200 > th dose independent rect. 1 3
228 162.59 radiation 1 43200 > th dose independent rect. 10 1
246 162.77 radiation 1 43200 < th dose independent rect. 10 1
247 162.77 radiation 1 43200 < th dose dependent rect. 10 1
268 163.24 radiation 1 43200 < th dose dependent rect. 8 1
274 163.32 radiation 1 43200 > th dose independent rect. 8 1
277 163.36 radiation 1 43200 < th dose independent rect. 8 1
281 163.42 temperature 15 43200 < th dose independent rect. 24 14
297 163.75 temperature 15 43200 < th dose independent sin 7 NA
300 163.76 wind 9 43200 < th dose independent rect. 18 2
326 164.11 wind 9 43200 > th dose independent rect. 18 2
343 164.26 temperature 15 43200 < th dose independent rect. 16 15
360 164.45 temperature 15 43200 > th dose independent rect. 22 6
391 164.74 radiation 1 43200 < th dose dependent rect. 8 3
396 164.78 radiation 10 43200 > th dose independent rect. 5 1
521 165.45 wind 7 43200 > th dose independent rect. 5 1
552 165.62 radiation 10 43200 < th dose dependent rect. 19 10
553 165.64 temperature 15 43200 < th dose independent no NA NA
558 165.75 temperature 15 43200 < th dose independent rect. 5 23
565 165.92 radiation 10 43200 < th dose dependent rect. 21 8
567 165.94 temperature 15 43200 > th dose independent rect. 24 18
571 165.99 temperature 15 43200 > th dose independent rect. 22 11
573 166.01 temperature 15 43200 > th dose independent rect. 24 9
590 166.13 temperature 15 43200 > th dose independent rect. 22 20
600 166.21 wind 9 43200 > th dose dependent rect. 5 1
608 166.24 temperature 15 43200 > th dose independent rect. 15 13
611 166.26 radiation 1 43200 > th dose independent rect. 8 3
618 166.31 radiation 1 43200 < th dose independent rect. 8 3
636 166.42 temperature 15 43200 > th dose independent rect. 13 18
638 166.43 temperature 15 43200 > th dose independent rect. 15 16
656 166.49 wind 9 43200 > th dose dependent rect. 18 2
690 166.65 temperature 15 43200 > th dose independent sin 11 NA
710 166.70 temperature 15 43200 > th dose independent rect. 10 21
765 166.96 temperature 15 43200 > th dose independent rect. 6 1
821 167.18 temperature 15 43200 > th dose independent rect. 5 23
861 167.32 temperature 15 43200 > th dose independent no NA NA