BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0563700 Os09g0563700|AK106611
(710 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G35140.1 | chr2:14813990-14816808 FORWARD LENGTH=880 145 5e-35
AT2G32910.1 | chr2:13959685-13961989 FORWARD LENGTH=692 120 2e-27
AT5G61910.1 | chr5:24861091-24863729 REVERSE LENGTH=739 109 5e-24
AT5G01660.1 | chr5:244504-248442 REVERSE LENGTH=657 107 3e-23
AT3G11000.2 | chr3:3447847-3450283 FORWARD LENGTH=608 106 5e-23
AT5G42050.1 | chr5:16815630-16816932 FORWARD LENGTH=350 87 4e-17
AT3G27090.1 | chr3:9990020-9991407 FORWARD LENGTH=297 86 6e-17
>AT2G35140.1 | chr2:14813990-14816808 FORWARD LENGTH=880
Length = 879
Score = 145 bits (367), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 70/131 (53%), Positives = 88/131 (67%)
Query: 18 GAIFMSNTATRELCFRSNIFGLPIEYQPFVRNIRQGMPLFLFDHTERKLYGVFEATSDGG 77
GAIFMSN +TR+ C +FGLPI FV++++ GM LFLF+ +R+L+GVF+A SDG
Sbjct: 23 GAIFMSNNSTRKECLSRKLFGLPIGLGGFVKHVKAGMMLFLFEFEKRELHGVFQACSDGA 82
Query: 78 FNIIRSAFSSIGCSYPAQVCFKIIWKCRPLTEDEFSPAIKENYYMPWKFYFDLSYQQVVC 137
NI +AF S G +PAQV F W+CRPL E EF AI ENY+ P KF F LS QV
Sbjct: 83 INIEPNAFRSSGKQFPAQVKFTEKWRCRPLCESEFGNAIHENYFTPTKFNFGLSKAQVQR 142
Query: 138 LYQLFDEKRVE 148
L +LF K+VE
Sbjct: 143 LLKLFSMKKVE 153
>AT2G32910.1 | chr2:13959685-13961989 FORWARD LENGTH=692
Length = 691
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 82/127 (64%), Gaps = 3/127 (2%)
Query: 16 MAGAIFMSNTATRELCFRSNIFGLPIEYQPFVRNIRQGMPLFLFDHTERKLYGVFEATSD 75
+ G IFM NT TR CFR ++ G+ + + FV+ I+ G+ LFL+D+ + LYG+FEA+S
Sbjct: 319 IGGLIFMCNTKTRPDCFRFSVMGVQEKRKDFVKGIKPGLKLFLYDYDLKLLYGIFEASSA 378
Query: 76 GGFNIIRSAFSSIGCSYPAQVCFKIIWKCRPLTEDEFSPAIKENYYMPWKFYFDLSYQQV 135
GG + R+AF G S+PAQV FK+ C PL E +F AI ENY KF +L+++QV
Sbjct: 379 GGMKLERNAF---GGSFPAQVRFKVFSDCIPLAESQFKKAIIENYNNKNKFKTELTHKQV 435
Query: 136 VCLYQLF 142
L +LF
Sbjct: 436 FKLKKLF 442
>AT5G61910.1 | chr5:24861091-24863729 REVERSE LENGTH=739
Length = 738
Score = 109 bits (272), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 59/137 (43%), Positives = 78/137 (56%), Gaps = 4/137 (2%)
Query: 6 VKRSFREDASMAGAIFMSNTATRELCFRSNIFGLPIEYQPFVRNIRQGMPLFLFDHTERK 65
++R + G IFM N T+ C+R +FG+P + V +I+ GM LFL+D +R
Sbjct: 51 IERRLDHHEQLPGYIFMCNGRTKTDCYRYRVFGIPRGGKDVVESIKPGMKLFLYDFEKRL 110
Query: 66 LYGVFEATSDGGFNIIRSAFSSIGCSYPAQVCFKIIWKCRPLTEDEFSPAIKENYYMPWK 125
LYGV+EAT G +I AF YPAQV F+I+ C PLTE+ F AI EN Y K
Sbjct: 111 LYGVYEATVGGRLDIEPEAFEG---KYPAQVGFRIVMNCLPLTENTFKSAIYEN-YKGSK 166
Query: 126 FYFDLSYQQVVCLYQLF 142
F +LS QV+ L LF
Sbjct: 167 FKQELSPHQVMSLLSLF 183
>AT5G01660.1 | chr5:244504-248442 REVERSE LENGTH=657
Length = 656
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 86/153 (56%), Gaps = 8/153 (5%)
Query: 1 MRQELVKRSFRE--DASMAGAIFMSNTATRELCFRSNIFGLPIEYQPFVRNIRQGMPLFL 58
M Q K SFR + + G +F T + C +FGLP + P+V+ I G+PLFL
Sbjct: 1 MAQRRGKFSFRNLTKSQLGGVVFGCTKNTIKECMSKQLFGLPSNHYPYVQKIDIGLPLFL 60
Query: 59 FDHTERKLYGVFEATSDGGFNIIRSAFSSIG---CSYPAQVCFKIIWKCRPLTEDEFSPA 115
F++++R L+G+FEA G N ++S G SYPAQV + +C PL+E++F PA
Sbjct: 61 FNYSDRTLHGIFEAAGCGQLNFDPYGWTSDGSERTSYPAQVPISVRLQCEPLSEEKFKPA 120
Query: 116 IKENYYMPWKFYFDLSY---QQVVCLYQLFDEK 145
I +NYY F+F+L + +++ CL F K
Sbjct: 121 IADNYYSSHHFWFELDHFQTRKLTCLLTSFAVK 153
>AT3G11000.2 | chr3:3447847-3450283 FORWARD LENGTH=608
Length = 607
Score = 106 bits (264), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 79/130 (60%), Gaps = 3/130 (2%)
Query: 16 MAGAIFMSNTATRELCFRSNIFGLPIEYQPFVRNIRQGMPLFLFDHTERKLYGVFEATSD 75
+ G IF +T + C+ N+FGLP + +++NI G+ LFLF++++R L+G+FEA S+
Sbjct: 130 LCGVIFGCKFSTIKECYAKNLFGLPAPHMAYIKNIDPGLTLFLFNYSDRTLHGIFEAASE 189
Query: 76 GGFNIIRSAFSSIGCS---YPAQVCFKIIWKCRPLTEDEFSPAIKENYYMPWKFYFDLSY 132
G NI A+S G YPAQV ++ +C PL E++FSP I ENY F+F+L
Sbjct: 190 GKLNIDSKAWSPNGTDPSPYPAQVKVRVRVRCEPLPEEKFSPVIVENYNDDKMFWFELDR 249
Query: 133 QQVVCLYQLF 142
Q L +LF
Sbjct: 250 GQTNKLLRLF 259
>AT5G42050.1 | chr5:16815630-16816932 FORWARD LENGTH=350
Length = 349
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 76/135 (56%), Gaps = 6/135 (4%)
Query: 15 SMAGAIFMSNTATRELCFRSNIFGLPIEYQPFVRNIRQGMPLFLFDHTERKLYGVFEATS 74
++ G IF+ N T E + +FGLP Y+ VR I G+PLFL++++ +L+G++EA S
Sbjct: 215 TIGGYIFVCNNDTMEENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLHGIYEAAS 274
Query: 75 DGGFNIIRSAFSSIGC----SYPAQVCFKIIWKCRPLTEDEFSPAIKENYYMPWKFYFDL 130
GG NI +AF C +PAQV C PL ED F P I +Y P KF +L
Sbjct: 275 FGGTNIELNAFEDKKCPGESRFPAQVRAITRKVCLPLEEDSFRP-ILHHYDGP-KFRLEL 332
Query: 131 SYQQVVCLYQLFDEK 145
S +V+ L +F ++
Sbjct: 333 SVPEVLSLLDIFADQ 347
>AT3G27090.1 | chr3:9990020-9991407 FORWARD LENGTH=297
Length = 296
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 77/133 (57%), Gaps = 6/133 (4%)
Query: 16 MAGAIFMSNTATRELCFRSNIFGLPIEYQPFVRNIRQGMPLFLFDHTERKLYGVFEATSD 75
+ G IF+ N T + + ++FGLP Y+ VR I G+PLFL+++T +L+G+FEAT+
Sbjct: 162 LGGYIFVCNNDTMQEDMKRHLFGLPPRYRDSVRAITPGLPLFLYNYTTHQLHGIFEATTF 221
Query: 76 GGFNIIRSAFSSIGCS----YPAQVCFKIIWKCRPLTEDEFSPAIKENYYMPWKFYFDLS 131
GG NI +A+ C +PAQV ++ C+ L ED F P + ++Y KF +LS
Sbjct: 222 GGTNIDATAWEDKKCKGESRFPAQVRIRVRKICKALEEDSFRPVL--HHYDGPKFRLELS 279
Query: 132 YQQVVCLYQLFDE 144
+ + L L ++
Sbjct: 280 VPETLDLLDLCEQ 292
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.131 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 16,365,599
Number of extensions: 767641
Number of successful extensions: 2008
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 2004
Number of HSP's successfully gapped: 7
Length of query: 710
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 604
Effective length of database: 8,200,473
Effective search space: 4953085692
Effective search space used: 4953085692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 115 (48.9 bits)