BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0440300 Os05g0440300|AK068179
(395 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0440300 Similar to S1 self-incompatibility locus-linke... 801 0.0
Os05g0440100 Histone deacetylase superfamily protein 546 e-156
Os12g0182700 Histone deacetylase superfamily protein 143 3e-34
Os07g0602200 Similar to HDA1 133 2e-31
AK110273 124 9e-29
Os07g0164100 Histone deacetylase superfamily protein 124 9e-29
Os08g0344100 Similar to Histone deacetylase 98 1e-20
Os06g0583400 Similar to Histone deacetylase (Fragment) 97 1e-20
Os11g0200000 Histone deacetylase family protein 96 6e-20
Os02g0214900 Similar to Histone deacetylase 93 4e-19
Os11g0201400 Histone deacetylase family protein 85 1e-16
Os01g0586400 84 1e-16
Os04g0409600 Similar to Histone deacetylase 83 3e-16
>Os05g0440300 Similar to S1 self-incompatibility locus-linked G221 protein
(Fragment)
Length = 395
Score = 801 bits (2069), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/395 (96%), Positives = 383/395 (96%)
Query: 1 MMDKRVIANLMEERRWVEVTNNGRRTTENVYAVFTGSVVRHYPRRLFSLLTLALACVEEG 60
MMDKRVIANLMEERRWVEVTNNGRRTTENVYAVFTGSVVRHYPRRLFSLLTLALACVEEG
Sbjct: 1 MMDKRVIANLMEERRWVEVTNNGRRTTENVYAVFTGSVVRHYPRRLFSLLTLALACVEEG 60
Query: 61 RFRQRLISGRVSCKQIKIFISCAVQRVPLLDQVPCSITVTNTEELVQADSAGANNNKICE 120
RFRQRLISGRVSCKQIKIFISCAVQRVPLLDQVPCSITVTNTEELVQADSAGANNNKICE
Sbjct: 61 RFRQRLISGRVSCKQIKIFISCAVQRVPLLDQVPCSITVTNTEELVQADSAGANNNKICE 120
Query: 121 CTFLNPGSWDXXXXXXXXXXXXMKHILDGHAKIAYALVRPPGHHAQPDRADGYCFLNNAG 180
CTFLNPGSWD MKHILDGHAKIAYALVRPPGHHAQPDRADGYCFLNNAG
Sbjct: 121 CTFLNPGSWDAALLAAGTTLSAMKHILDGHAKIAYALVRPPGHHAQPDRADGYCFLNNAG 180
Query: 181 LAVKLALDSGRRRVAVVDIDVHYGNGTAEGFYHTDSVLTISLHMKHGSWGPSHPQSGLVD 240
LAVKLALDSGRRRVAVVDIDVHYGNGTAEGFYHTDSVLTISLHMKHGSWGPSHPQSGLVD
Sbjct: 181 LAVKLALDSGRRRVAVVDIDVHYGNGTAEGFYHTDSVLTISLHMKHGSWGPSHPQSGLVD 240
Query: 241 ETGEGRGLGYNLNIPLPNGSGDAGYEYAMNELVVPAIEKFRPELMVFVVGQDSSAFDPNG 300
ETGEGRGLGYNLNIPLPNGSGDAGYEYAMNELVVPAIEKFRPELMVFVVGQDSSAFDPNG
Sbjct: 241 ETGEGRGLGYNLNIPLPNGSGDAGYEYAMNELVVPAIEKFRPELMVFVVGQDSSAFDPNG 300
Query: 301 RQCLTMDGYRKIGQIMRGMADQHSNGQILIVQEGGYHITYSAYCLHATLEGVLNLQAPLL 360
RQCLTMDGYRKIGQIMRGMADQHSNGQILIVQEGGYHITYSAYCLHATLEGVLNLQAPLL
Sbjct: 301 RQCLTMDGYRKIGQIMRGMADQHSNGQILIVQEGGYHITYSAYCLHATLEGVLNLQAPLL 360
Query: 361 DDPLGFYPDDEKYTMQAVDIIKKCWKESIPFLKDI 395
DDPLGFYPDDEKYTMQAVDIIKKCWKESIPFLKDI
Sbjct: 361 DDPLGFYPDDEKYTMQAVDIIKKCWKESIPFLKDI 395
>Os05g0440100 Histone deacetylase superfamily protein
Length = 392
Score = 546 bits (1408), Expect = e-156, Method: Compositional matrix adjust.
Identities = 264/320 (82%), Positives = 278/320 (86%), Gaps = 2/320 (0%)
Query: 76 IKIFISCAVQRVPLLDQVPCSITVTNTEELVQADSAGANNNKICECTFLNPGSWDXXXXX 135
I FIS R ++ + EELVQA++ GA K+CE TFLNPGSW
Sbjct: 75 IARFISWHSGRPAHAAELLSFHSAEYIEELVQANAVGAK--KLCEGTFLNPGSWGAALLA 132
Query: 136 XXXXXXXMKHILDGHAKIAYALVRPPGHHAQPDRADGYCFLNNAGLAVKLALDSGRRRVA 195
MKHILDGHAKIAYALVRPPGHHAQPDRADGYCFLNNAGLAVKLALDSGRR+VA
Sbjct: 133 AGTTLSAMKHILDGHAKIAYALVRPPGHHAQPDRADGYCFLNNAGLAVKLALDSGRRKVA 192
Query: 196 VVDIDVHYGNGTAEGFYHTDSVLTISLHMKHGSWGPSHPQSGLVDETGEGRGLGYNLNIP 255
VVDIDVHYGNGTAEGFYHTDSVLTISLHMKHGSWGPSHPQSG VDE GEGRGLGYNLNIP
Sbjct: 193 VVDIDVHYGNGTAEGFYHTDSVLTISLHMKHGSWGPSHPQSGSVDEIGEGRGLGYNLNIP 252
Query: 256 LPNGSGDAGYEYAMNELVVPAIEKFRPELMVFVVGQDSSAFDPNGRQCLTMDGYRKIGQI 315
LPNGSGDAGYEYAMNELVVPAIEKFRPEL+VFVVGQDSS FDPNGRQCLTMDGYRKIGQI
Sbjct: 253 LPNGSGDAGYEYAMNELVVPAIEKFRPELLVFVVGQDSSTFDPNGRQCLTMDGYRKIGQI 312
Query: 316 MRGMADQHSNGQILIVQEGGYHITYSAYCLHATLEGVLNLQAPLLDDPLGFYPDDEKYTM 375
MRGMADQHSNGQILIVQEGGYHI+YSAYCLHATLEGVLNLQAPLLDDP+ +YP+DEKYTM
Sbjct: 313 MRGMADQHSNGQILIVQEGGYHISYSAYCLHATLEGVLNLQAPLLDDPIAYYPEDEKYTM 372
Query: 376 QAVDIIKKCWKESIPFLKDI 395
+ VDI+KKCWKESIPFLKDI
Sbjct: 373 KVVDIMKKCWKESIPFLKDI 392
>Os12g0182700 Histone deacetylase superfamily protein
Length = 443
Score = 143 bits (360), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 122/233 (52%), Gaps = 8/233 (3%)
Query: 153 IAYALVRPPGHHAQPDRADGYCFLNNAGLAVKLALDS-GRRRVAVVDIDVHYGNGTAEGF 211
+ +ALVRPPGHHA P+ G+C N +A + A + G +RV ++D DVH+GNGT + F
Sbjct: 211 LGFALVRPPGHHAVPEGPMGFCVFGNIAVAARYAQNQHGLKRVMIIDFDVHHGNGTCDAF 270
Query: 212 YHTDSVLTISLHMKHGSWGPSHPQSGLVDETGEGRGLGYNLNIPLPNGSGDAGYEYAMNE 271
Y + +S H S+P +G + + G+G G G LN+PLP GSGD A +E
Sbjct: 271 YEDPDIFFLSTHQLG-----SYPGTGKIHQVGQGNGEGTTLNLPLPGGSGDYAMRCAFDE 325
Query: 272 LVVPAIEKFRPELMVFVVGQDSSAFDPNGRQCLTMDGYRKIGQIMRGMADQHSNGQILIV 331
++ PA ++F+P++++ G D+ A DP T + + +R +A + G+ +
Sbjct: 326 VIAPAAQRFKPDIILVSAGYDAHALDPLAGLQFTTGTFYMLAARIREVAAELCGGRCVFF 385
Query: 332 QEGGYHITYSAYCLHATLEGVLNLQ--APLLDDPLGFYPDDEKYTMQAVDIIK 382
EGGY++ + + T L A DDP Y + + +A+D K
Sbjct: 386 LEGGYNLESLSSSVADTFRAFLGEPSLAARFDDPAMLYEEPTRKIREAIDKAK 438
>Os07g0602200 Similar to HDA1
Length = 695
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 137/276 (49%), Gaps = 25/276 (9%)
Query: 123 FLNPGSWDXXXXXXXXXXXXMKHILDGHAKIAYALVRPPGHHAQPDRADGYCFLNNAGLA 182
+ N GS + + + G A ALVRPPGHHA+ + A G+C NN +A
Sbjct: 103 YFNKGSSESAFLAAGSVIEVAEKVAAGELSSAIALVRPPGHHAEHNEAMGFCLFNNVAIA 162
Query: 183 VKLAL----DSGRRRVAVVDIDVHYGNGTAEGFYHTDSVLTISLH-MKHGSWGPSHPQSG 237
L D G +++ +VD DVH+GNGT + FY VL S+H +GS+ P+ +
Sbjct: 163 ADYLLNERTDLGIKKILIVDWDVHHGNGTQKMFYSDPRVLFFSVHRFDYGSFYPAEGDAS 222
Query: 238 LVDETGEGRGLGYNLNIPLPNGS-GDAGYEYAMNELVVPAIEKFRPELMVFVVGQDSSAF 296
GEG G GYN+N+P +G GDA Y A + +++P E F P++++ G D++
Sbjct: 223 YC-FIGEGDGKGYNINVPWEHGKCGDADYIAAWDHVLLPVAEAFNPDIVLVSAGFDAALG 281
Query: 297 DPNGRQCLTMDGYRKIGQIMRGMADQHSNGQILIVQEGGYHITYSAYCLHATLEGVLNLQ 356
DP G C+T +GY + + G A G+I++ EGGY+ L + V
Sbjct: 282 DPLGGCCITPNGYALLLTKLLGFA----QGRIVMALEGGYN-------LRSIANSVSACA 330
Query: 357 APLLDDPLGF-YPDDEKY-----TMQAV-DIIKKCW 385
LL D F PD + + +QAV D +K W
Sbjct: 331 KVLLGDKFRFDTPDMQPFESSWRVIQAVRDELKTFW 366
>AK110273
Length = 744
Score = 124 bits (312), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 156/320 (48%), Gaps = 35/320 (10%)
Query: 67 ISGRVSCKQ--IKIFISCAVQRVPLLDQVPCSITVTNTEELVQADSAGANNNKICECTFL 124
++ R++ KQ +++ + +QR+ L CS TV T ++ AD T++
Sbjct: 274 VAARLATKQELLRVHAADHLQRLHLF----CSGTVPAT--IIPAD------------TYI 315
Query: 125 NPGSWDXXXXXXXXXXXXMKHILDGHAKIAYALVRPPGHHAQPDRADGYCFLNNAGLAVK 184
N + ++ G A A++RPPGHHA+ + A G+CF NNA +A +
Sbjct: 316 NQHTLHCAALAAGSAAEAAVRVVWGEAAAGAAVIRPPGHHAESNTAMGFCFFNNAAVAAR 375
Query: 185 LALDSGRRRVAVVDIDVHYGNGTAEGFYHTDSVLTISLHMKHGSWGPSHPQSGLVDETGE 244
A +G RV ++D DVH+GNGT F SVL +SLH G +P +G DE G
Sbjct: 376 AAQAAGAERVLILDWDVHHGNGTQHIFEADPSVLYMSLHRY--DRGNFYPGTGGADEVGH 433
Query: 245 GRGLGYNLNIPLPNGS-GDAGYEYAMNELVVPAIEKFRPELMVFVVGQDSSAFDPNGRQC 303
GRG GY +N+P G+ G+ Y AM ++++P +F P L++ G D++ DP G C
Sbjct: 434 GRGAGYTVNVPWDAGNIGNGDYMAAMEQVILPIAREFAPNLIIISAGFDAADGDPIGGCC 493
Query: 304 LTMDGYRKIGQIMRGMADQHSNGQILIVQEGGYHITYSAYCLHATLEGVLNLQAPLLDDP 363
LT + + + + +A +++ EGGY++ +A A L +L ++P
Sbjct: 494 LTPECFGNMTAELLPIAP------TVLLLEGGYNLLSTALSTEACLRVLLG------EEP 541
Query: 364 LGFYPDDEKYTMQAVDIIKK 383
P + A+ KK
Sbjct: 542 QTLLPRPSPFGWLAIQAAKK 561
>Os07g0164100 Histone deacetylase superfamily protein
Length = 623
Score = 124 bits (312), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 83/253 (32%), Positives = 135/253 (53%), Gaps = 11/253 (4%)
Query: 146 ILDGHAKIAYALVRPPGHHAQPDRADGYCFLNNAGLAVKLALDSGRRRVAVVDIDVHYGN 205
I+ G + +A+VRPPGHHA +A G+C NNA +A A +G ++V +VD DVH+GN
Sbjct: 313 IVSGRVRNGFAMVRPPGHHAGVKQAMGFCLHNNAAVAALAAQRAGAKKVLIVDWDVHHGN 372
Query: 206 GTAEGFYHTDSVLTISLHMKHGSWGPSHPQSGLVDETGEGRGLGYNLNIPLPNGS-GDAG 264
GT E F +SVL ISLH G +P +G +E G G G+++NIP G GD
Sbjct: 373 GTQEIFDGDNSVLYISLHRHED--GSFYPGTGAANEVGVMDGQGFSVNIPWSRGGVGDND 430
Query: 265 YEYAMNELVVPAIEKFRPELMVFVVGQDSSAFDPNGRQCLTMDGYRKIGQIMRGMADQHS 324
Y +A +V+P +F P++ + G D++ DP G +T GY ++ ++ S
Sbjct: 431 YIFAFKHVVLPIAAEFAPDITIISAGFDAARGDPLGCCDVTPAGYSRMASMLTAC----S 486
Query: 325 NGQILIVQEGGYHITYSAYCLHATLEGVLNLQAPLLDDPLGFYPDDE--KYTMQAVDIIK 382
G++L++ EGGY++ + ++ VL +P+ D P +E + +Q + I +
Sbjct: 487 QGKLLVILEGGYNLRSISSSATEVVK-VLLGDSPVYDTD-ATEPSEEGIQTVLQVLSIQQ 544
Query: 383 KCWKESIPFLKDI 395
+ W +P +
Sbjct: 545 QFWPVLVPSFASV 557
>Os08g0344100 Similar to Histone deacetylase
Length = 458
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 96/182 (52%), Gaps = 10/182 (5%)
Query: 163 HHAQPDRADGYCFLNNAGLAVKLALDSGRRRVAVVDIDVHYGNGTAEGFYHTDSVLTISL 222
HHA+ A G+C++N+ LA+ L L RRV VDIDVH+G+G E F+ T+ V+T S
Sbjct: 153 HHAKKGEASGFCYVNDIVLAI-LELLKFHRRVLYVDIDVHHGDGVEEAFFTTNRVMTCSF 211
Query: 223 HMKHGSWGPSHPQSGLVDETGEGRGLGYNLNIPLPNGSGDAGYEYAMNELVVPAIEKFRP 282
H +G P +G + + G G G Y LN+PL +G D + ++ +E ++P
Sbjct: 212 H----KYGDFFPGTGHITDVGAGEGKHYALNVPLSDGIDDDTFRDLFQCIIKKVMEVYQP 267
Query: 283 ELMVFVVGQDSSAFDPNGRQCLTMDGYRKIGQIMRGMADQHSNGQILIVQEGGYHITYSA 342
+++V G DS A D G L++ G+ + +R N ++++ GGY I A
Sbjct: 268 DVVVLQCGADSLAGDRLGCFNLSVKGHADCLRYLRSF-----NIPMMVLGGGGYTIRNVA 322
Query: 343 YC 344
C
Sbjct: 323 RC 324
>Os06g0583400 Similar to Histone deacetylase (Fragment)
Length = 518
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 87/157 (55%), Gaps = 5/157 (3%)
Query: 163 HHAQPDRADGYCFLNNAGLAVKLALDSGRRRVAVVDIDVHYGNGTAEGFYHTDSVLTISL 222
HHA+ A G+C++N+ LA+ L L +RV VDID+H+G+G E FY TD V+T+S
Sbjct: 152 HHAKKCEASGFCYVNDIVLAI-LELLKYHQRVLYVDIDIHHGDGVEEAFYTTDRVMTVSF 210
Query: 223 HMKHGSWGPSHPQSGLVDETGEGRGLGYNLNIPLPNGSGDAGYEYAMNELVVPAIEKFRP 282
H +G P +G + + G +G Y+LN+PL +G D Y+ ++ +E FRP
Sbjct: 211 H----KFGDYFPGTGDIRDIGHSKGKYYSLNVPLDDGIDDESYQSLFKPIMGKVMEVFRP 266
Query: 283 ELMVFVVGQDSSAFDPNGRQCLTMDGYRKIGQIMRGM 319
+V G DS + D G L++ G+ + + MR
Sbjct: 267 GAVVLQCGADSLSGDRLGCFNLSIRGHAECVRFMRSF 303
>Os11g0200000 Histone deacetylase family protein
Length = 456
Score = 95.5 bits (236), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 88/160 (55%), Gaps = 5/160 (3%)
Query: 163 HHAQPDRADGYCFLNNAGLAVKLALDSGRRRVAVVDIDVHYGNGTAEGFYHTDSVLTISL 222
HHA +A G+C++N+ LA+ L + RRV VDID H+G+G F ++ V+T+S
Sbjct: 156 HHASACKATGFCYVNDIVLAINELLGT-FRRVIYVDIDAHHGDGVQNAFLDSNRVMTLSF 214
Query: 223 HMKHGSWGPSH---PQSGLVDETGEGRGLGYNLNIPLPNGSGDAGYEYAMNELVVPAIEK 279
H ++G P P SG ++E G+G G Y++N+PL G D Y +V A+E
Sbjct: 215 H-RYGKITPHKDFFPGSGAINEIGDGAGEHYSVNVPLDAGVRDDVYHTLFKPIVGKAMEV 273
Query: 280 FRPELMVFVVGQDSSAFDPNGRQCLTMDGYRKIGQIMRGM 319
F+PE +V G DS + D G L++ G+ + +RG
Sbjct: 274 FQPEAIVLQCGADSLSGDRLGGMELSVRGHAECVSFLRGF 313
>Os02g0214900 Similar to Histone deacetylase
Length = 510
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 83/157 (52%), Gaps = 5/157 (3%)
Query: 163 HHAQPDRADGYCFLNNAGLAVKLALDSGRRRVAVVDIDVHYGNGTAEGFYHTDSVLTISL 222
HHA+ A G+C++N+ LA+ L L RV +DID+H+G+G E FY T+ V+T+S
Sbjct: 157 HHAKKSEASGFCYVNDIVLAI-LELLKLHERVLYIDIDIHHGDGVEEAFYTTNRVMTVSF 215
Query: 223 HMKHGSWGPSHPQSGLVDETGEGRGLGYNLNIPLPNGSGDAGYEYAMNELVVPAIEKFRP 282
H +G P +G + + G G Y LN+PL +G D Y+ ++ +E +RP
Sbjct: 216 H----KFGDYFPGTGDIRDIGYSEGKYYCLNVPLDDGIDDDSYQSIFKPIISKVMEMYRP 271
Query: 283 ELMVFVVGQDSSAFDPNGRQCLTMDGYRKIGQIMRGM 319
+V G DS + D G L+ G+ + + MR
Sbjct: 272 GAVVLQCGADSLSGDRLGCFNLSGKGHAECVKFMRSF 308
>Os11g0201400 Histone deacetylase family protein
Length = 461
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 86/160 (53%), Gaps = 17/160 (10%)
Query: 163 HHAQPDRADGYCFLNNAGLAVKLALDSGRRRVAVVDIDVHYGNGTAEGFYHTDSVLTISL 222
HHA +A G+C++N+ LA+ L + RRV VDID H+G+G F ++ V+T+S
Sbjct: 156 HHASACKATGFCYVNDIVLAINELLGT-FRRVIYVDIDAHHGDGVQNAFLDSNRVMTLSF 214
Query: 223 HMKHGSWGPSH---PQSGLVDETGEGRGLGYNLNIPLPNGSGDAGYEYAMNELVVPAIEK 279
H ++G P P SG ++E G G G Y++N+PL DAG + A+E
Sbjct: 215 H-RYGKITPHKNFFPGSGAINEIGAGAGEHYSVNVPL-----DAG-------VRADAMEV 261
Query: 280 FRPELMVFVVGQDSSAFDPNGRQCLTMDGYRKIGQIMRGM 319
F+PE +V G DS + D G L++ G+ + +RG
Sbjct: 262 FQPEAIVLQCGADSLSGDRLGGMELSVRGHAECVGFLRGF 301
>Os01g0586400
Length = 481
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 84/156 (53%), Gaps = 5/156 (3%)
Query: 163 HHAQPDRADGYCFLNNAGLAVKLALDSGRRRVAVVDIDVHYGNGTAEGFYHTDSVLTISL 222
HHA A G+C++N+ LA++ L + RRV VDIDVH+G+G F ++ V+T+S
Sbjct: 164 HHACRGGARGFCYVNDIVLAIRELL-AHFRRVLYVDIDVHHGDGVQAAFEASNRVMTVSF 222
Query: 223 HMKHGSWGPSHPQSGLVDETG-EGRGLGYNLNIPLPNGSGDAGYEYAMNELVVPAIEKFR 281
H +HG G P SG V + G +G G LN+P+ G GD Y ++ +E F+
Sbjct: 223 H-QHG--GGFFPGSGAVADVGKKGPGRYCALNVPVSVGIGDEEYHRLFEPIMARVMEVFQ 279
Query: 282 PELMVFVVGQDSSAFDPNGRQCLTMDGYRKIGQIMR 317
PE +V G DS A D G LT G+ + +R
Sbjct: 280 PEAVVLQCGADSLAGDRLGELNLTTRGHAQCVSFIR 315
>Os04g0409600 Similar to Histone deacetylase
Length = 309
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 85/166 (51%), Gaps = 8/166 (4%)
Query: 193 RVAVVDIDVHYGNGTAEGFYHTDSVLTISLHMKHGSWGPSHPQSGLVDETGEGRGLGYNL 252
+V +DIDVH+G+G E FY TD V+T+S H K+G + P +G + + GE G Y +
Sbjct: 44 QVLYIDIDVHHGDGVEEAFYFTDRVMTVSFH-KYGDF--FFPGTGDIKDIGEREGKYYAI 100
Query: 253 NIPLPNGSGDAGYEYAMNELVVPAIEKFRPELMVFVVGQDSSAFDPNGRQCLTMDGYRKI 312
NIPL +G D+G+ ++ +E + P +V G DS A D G L+++G+ +
Sbjct: 101 NIPLKDGIDDSGFTRLFKTVIAKVVETYLPGAIVLQCGADSLARDRLGCFNLSIEGHAEC 160
Query: 313 GQIMRGMADQHSNGQILIVQEGGYHITYSAYCLHATLEGVLNLQAP 358
+ ++ N +L+ GGY A C +L+ + P
Sbjct: 161 VKFVKKF-----NIPLLVTGGGGYTKENVARCWAVETGVLLDTELP 201
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.138 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,532,492
Number of extensions: 652711
Number of successful extensions: 1150
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 1129
Number of HSP's successfully gapped: 13
Length of query: 395
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 292
Effective length of database: 11,657,759
Effective search space: 3404065628
Effective search space used: 3404065628
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)