BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0429400 Os05g0429400|AK069844
(585 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0429400 Cellular retinaldehyde binding/alpha-tocophero... 724 0.0
Os01g0874700 emp24/gp25L/p24 family protein 652 0.0
Os06g0671800 Cellular retinaldehyde binding/alpha-tocophero... 337 1e-92
Os05g0345100 emp24/gp25L/p24 family protein 85 1e-16
Os01g0926800 Phosphatidylinositol transfer protein-like, N-... 76 9e-14
Os05g0545000 Similar to Phosphatidylinositol transfer-like ... 74 4e-13
Os02g0721800 Similar to Phosphatidylinositol transfer-like ... 74 4e-13
Os01g0701900 Similar to Phosphatidylinositol transfer-like ... 72 2e-12
Os08g0341700 Similar to Phosphatidylinositol transfer-like ... 71 2e-12
>Os05g0429400 Cellular retinaldehyde binding/alpha-tocopherol transport family
protein
Length = 585
Score = 724 bits (1868), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/383 (92%), Positives = 354/383 (92%)
Query: 203 VVVTEDEGTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLIWGVPLTGDDERTDTVLLKF 262
VVVTEDEGTS LIWGVPLTGDDERTDTVLLKF
Sbjct: 203 VVVTEDEGTSKTVEAIEETVVVAAPAAAAEAEAAAPKEELIWGVPLTGDDERTDTVLLKF 262
Query: 263 LRAREFKVKEAMAMLKAAVLWRKRFGIDAVLAADLGLPELENVVFYRGADREGHPVCYNV 322
LRAREFKVKEAMAMLKAAVLWRKRFGIDAVLAADLGLPELENVVFYRGADREGHPVCYNV
Sbjct: 263 LRAREFKVKEAMAMLKAAVLWRKRFGIDAVLAADLGLPELENVVFYRGADREGHPVCYNV 322
Query: 323 YGEFQDKDLYEKAFGDEEKRERFLKWRIQLLERGILDQLDFSPSGICSMVQVTDLKNSPP 382
YGEFQDKDLYEKAFGDEEKRERFLKWRIQLLERGILDQLDFSPSGICSMVQVTDLKNSPP
Sbjct: 323 YGEFQDKDLYEKAFGDEEKRERFLKWRIQLLERGILDQLDFSPSGICSMVQVTDLKNSPP 382
Query: 383 MLGKHRTVTRQALALLQDNYPEFIAKKIFINVPWWYIAANKMVSPFLTQRTKSKIIFCTA 442
MLGKHRTVTRQALALLQDNYPEFIAKKIFINVPWWYIAANKMVSPFLTQRTKSKIIFCTA
Sbjct: 383 MLGKHRTVTRQALALLQDNYPEFIAKKIFINVPWWYIAANKMVSPFLTQRTKSKIIFCTA 442
Query: 443 AKSAETLFRYIAPEQVPVQFGGLYKEDDTEFSTSDAVTELPIKPSSKETVEIPATENSTV 502
AKSAETLFRYIAPEQVPVQFGGLYKEDDTEFSTSDAVTELPIKPSSKETVEIPATENSTV
Sbjct: 443 AKSAETLFRYIAPEQVPVQFGGLYKEDDTEFSTSDAVTELPIKPSSKETVEIPATENSTV 502
Query: 503 VWELRVLGWEVSYGAEFTPDAEGGYTVIVQKTRKVPANEEPIMKGSFKVGEPGKIVLTVD 562
VWELRVLGWEVSYGAEFTPDAEGGYTVIVQKTRKVPANEEPIMKGSFKVGEPGKIVLTVD
Sbjct: 503 VWELRVLGWEVSYGAEFTPDAEGGYTVIVQKTRKVPANEEPIMKGSFKVGEPGKIVLTVD 562
Query: 563 NAASKKKKQLLYRFKVKSSSESA 585
NAASKKKKQLLYRFKVKSSSESA
Sbjct: 563 NAASKKKKQLLYRFKVKSSSESA 585
Score = 85.9 bits (211), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 43/43 (100%), Positives = 43/43 (100%)
Query: 66 IEGTGSFKEESNLVSELPDPERTALAQLKELVAAALAAGEFDL 108
IEGTGSFKEESNLVSELPDPERTALAQLKELVAAALAAGEFDL
Sbjct: 66 IEGTGSFKEESNLVSELPDPERTALAQLKELVAAALAAGEFDL 108
>Os01g0874700 emp24/gp25L/p24 family protein
Length = 613
Score = 652 bits (1683), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/343 (90%), Positives = 328/343 (95%), Gaps = 1/343 (0%)
Query: 242 LIWGVPLTGDDERTDTVLLKFLRAREFKVKEAMAMLKAAVLWRKRFGIDAVLAADLGLPE 301
LIWGVPL GDDERTDTVLLKFLRAREFKVKEAMAML++AVLWRKRFGI+++L ADL LPE
Sbjct: 271 LIWGVPLVGDDERTDTVLLKFLRAREFKVKEAMAMLRSAVLWRKRFGIESLLDADLALPE 330
Query: 302 LENVVFYRGADREGHPVCYNVYGEFQDKDLYEKAFGDEEKRERFLKWRIQLLERGILDQL 361
L++VVFYRGADREGHPVCYNVYGEFQDKDLYEKAFGDEEKRERFLKWRIQLLERGIL QL
Sbjct: 331 LDSVVFYRGADREGHPVCYNVYGEFQDKDLYEKAFGDEEKRERFLKWRIQLLERGILSQL 390
Query: 362 DFSPSGICSMVQVTDLKNSPPMLGKHRTVTRQALALLQDNYPEFIAKKIFINVPWWYIAA 421
DFSPSGICSMVQVTDLKNSPPMLGKHR VTRQA+ALLQDNYPEFIAKK+FINVPWWY+AA
Sbjct: 391 DFSPSGICSMVQVTDLKNSPPMLGKHRAVTRQAVALLQDNYPEFIAKKVFINVPWWYLAA 450
Query: 422 NKMVSPFLTQRTKSKIIFCTAAKSAETLFRYIAPEQVPVQFGGLYKEDDTEFSTSDAVTE 481
NKM+SPFLTQRTKSK IF + AKSAETLFRYIAPEQVPVQFGGL+KEDD EF+TSDAVTE
Sbjct: 451 NKMMSPFLTQRTKSKFIFASPAKSAETLFRYIAPEQVPVQFGGLFKEDDPEFTTSDAVTE 510
Query: 482 LPIKPSSKETVEIPATENSTVVWELRVLGWEVSYGAEFTPDAEGGYTVIVQKTRKVPANE 541
L IKPSSKETVEIP TENST+ WELRVLGWEVSYGAEFTPDAEGGYTVIVQKTRKVPANE
Sbjct: 511 LTIKPSSKETVEIPVTENSTIGWELRVLGWEVSYGAEFTPDAEGGYTVIVQKTRKVPANE 570
Query: 542 EPIMKGSFKVGEPGKIVLTVDNAASKKKKQLLYRFKVKSSSES 584
EPIMKGSFKVGEPGKIVLT++N ASKKKK LLYR KVKS+SES
Sbjct: 571 EPIMKGSFKVGEPGKIVLTINNPASKKKK-LLYRSKVKSTSES 612
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 39/43 (90%)
Query: 66 IEGTGSFKEESNLVSELPDPERTALAQLKELVAAALAAGEFDL 108
IEGTGSFKEESNLV++LPDPE+ AL + K+L+AAALAA EF+L
Sbjct: 69 IEGTGSFKEESNLVADLPDPEKKALDEFKQLIAAALAACEFNL 111
>Os06g0671800 Cellular retinaldehyde binding/alpha-tocopherol transport family
protein
Length = 517
Score = 337 bits (865), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 174/350 (49%), Positives = 234/350 (66%), Gaps = 13/350 (3%)
Query: 243 IWGVPL--TGDDERTDTVLLKFLRAREFKVKEAMAMLKAAVLWRKRF-----GIDAVLAA 295
+WGVPL + D+ TD VLLKFLRAR+FK A ML+ + WR+ + G D
Sbjct: 167 LWGVPLLPSKGDDATDVVLLKFLRARDFKAGAAFDMLRKTLHWRREWKGFAAGTDDDDDG 226
Query: 296 DLGLPELENVVFYRGADREGHPVCYNVYGEFQDKDLYEKAFGDEEKRERFLKWRIQLLER 355
+ EL + + GADREGHPVCYN G F D +Y+KA G EE + RFL+WR++ +E
Sbjct: 227 EALPAELADACYLDGADREGHPVCYNALGVFADDAVYKKALGTEEGKARFLRWRVRAMES 286
Query: 356 GILDQLDFSPSGICSMVQVTDLKNSP-PMLGKHRTVTRQALALLQDNYPEFIAKKIFINV 414
+ +LD P G+ S++QVTDLKNSP P R +Q L L QDNYPE +A+ I INV
Sbjct: 287 HVA-KLDLRPGGVASLLQVTDLKNSPGPAKKDLRVAMKQVLDLFQDNYPELVARNILINV 345
Query: 415 PWWYIAANKMVSPFLTQRTKSKIIFCTAAKSAETLFRYIAPEQVPVQFGGLYKEDDTEFS 474
P+WY A + + PF+TQRTKSK + +K ETL +YI E +PV++GGL ++DDTEFS
Sbjct: 346 PFWYYAFSTLFYPFMTQRTKSKFVIARPSKVTETLLKYIPIEAIPVKYGGLKRDDDTEFS 405
Query: 475 TSDA-VTELPIKPSSKETVEIPATE-NSTVVWELRVLGWEVSYGAEFTPDAEGGYTVIVQ 532
D+ VTEL +K SS ET+EI ATE ++T+ W+L VLGWEV+Y EF P EG YTVIV+
Sbjct: 406 AEDSEVTELVVKASSTETIEIEATEGDTTLTWDLTVLGWEVNYKEEFVPSEEGSYTVIVK 465
Query: 533 KTRKVPANEEPIMKGSFKVGEPGKIVLTVDNAASKKKKQLLYRFKVKSSS 582
K +K+ ++E + + SF+ GEPGK+VLTV+N +KKK +L+R K KS+
Sbjct: 466 KGKKMGSSEAAV-RNSFRAGEPGKVVLTVENLTHRKKK-VLFRHKAKSAC 513
>Os05g0345100 emp24/gp25L/p24 family protein
Length = 99
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 57/84 (67%)
Query: 499 NSTVVWELRVLGWEVSYGAEFTPDAEGGYTVIVQKTRKVPANEEPIMKGSFKVGEPGKIV 558
+T+ W+L V GWE+ YGAE+ P AE YT+ V++TRKVPA + + +F E GK+V
Sbjct: 15 GATITWDLVVGGWELEYGAEYVPAAEDSYTLCVERTRKVPAAADEPVHNAFTAREAGKMV 74
Query: 559 LTVDNAASKKKKQLLYRFKVKSSS 582
L++DN+ S+K+K YR+ V+ S
Sbjct: 75 LSIDNSGSRKRKVAAYRYFVRKPS 98
>Os01g0926800 Phosphatidylinositol transfer protein-like, N-terminal domain
containing protein
Length = 247
Score = 75.9 bits (185), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 99/216 (45%), Gaps = 21/216 (9%)
Query: 253 ERTDTVLLKFLRAREFKVKEAMAMLKAAVLWRKRFGIDAVLAADLGLPELEN-VVFYRGA 311
E + L +FLRAR+ V++A AML A+ WR+ + + +L++ V+ GA
Sbjct: 33 EVDNLTLRRFLRARDHNVEKASAMLLKALRWRREAVPGGSVPEEKVQSDLDDDKVYMGGA 92
Query: 312 DREGHPVCYNVYGEFQDKDLYEKAFGDEEKRERFLKWRIQLLERGILDQLDFSPSGICSM 371
DR G P+ K F + +F + + LL+ I ++ P G
Sbjct: 93 DRTGRPILLA---------FPAKHFSAKRDMPKFKSYCVYLLD-SICARI---PRGQEKF 139
Query: 372 VQVTDLKNSPPMLGKHRTVTRQ---ALALLQDNYPEFIAKKIFINVPWWYIAANKMVSPF 428
V + DLK G R A+ ++Q+ YPE + K + I+VP+ ++ A KM+ PF
Sbjct: 140 VCIVDLKG----WGYSNCDIRAYIAAIEIMQNYYPERLGKALMIHVPYMFMKAWKMIYPF 195
Query: 429 LTQRTKSKIIFCTAAKSAETLFRYIAPEQVPVQFGG 464
+ T+ K +F E L + I Q+P GG
Sbjct: 196 IDNVTRDKFVFVDDKSLQEVLHQEIDDSQIPDTLGG 231
>Os05g0545000 Similar to Phosphatidylinositol transfer-like protein IV
Length = 613
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 101/238 (42%), Gaps = 32/238 (13%)
Query: 246 VPLTGDDERTDTVLLKFLRAREFKVKEAMAMLKAAVLWRKRFGIDAVLAADLGLPELENV 305
+P DD T +L+FL+AR+F V++A +M + WRK FG D + + E + V
Sbjct: 97 LPQQHDDYHT---MLRFLKARKFDVEKAKSMWSDMLKWRKEFGADNI--EEFDYTEADEV 151
Query: 306 V-----FYRGADREGHPVCYNVYGEFQDKDLYEKAFGDEEKRERFLKWRIQLLERGILDQ 360
+ FY G D+EG P+ + G+ L + ER++K+ ++ ER Q
Sbjct: 152 MKYYPQFYHGVDKEGRPIYIELIGKVDANKLMQVT-----TIERYVKYHVKEFERCF--Q 204
Query: 361 LDFSPSGICSM-----------VQVTDLKNSPPMLGKHRTVTRQALALLQDNYPEFIAKK 409
+ F I + VQ LKN R + + + DNYPE + +
Sbjct: 205 MRFPACSIAAKRPIDSSTTILDVQGVGLKN---FSKAARDLITRLQKIDNDNYPETLRRM 261
Query: 410 IFINVPWWYIAANKMVSPFLTQRTKSKIIFCTAAKSAETLFRYIAPEQVPVQFGGLYK 467
IN + V FL +T SK I +K L I ++P FGG K
Sbjct: 262 YIINAGQGFKMLWSTVKSFLDPKTASK-IHVLGSKYQNKLLEIIDENELPEFFGGKCK 318
>Os02g0721800 Similar to Phosphatidylinositol transfer-like protein IV
Length = 612
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 99/235 (42%), Gaps = 31/235 (13%)
Query: 246 VPLTGDDERTDTVLLKFLRAREFKVKEAMAMLKAAVLWRKRFGIDAVLAADLGLPELENV 305
+P DD T +L+FL+AR+F V++A M + WRK FG D +L D ELE V
Sbjct: 96 LPERHDDYHT---MLRFLKARKFDVEKAAHMWADMLHWRKDFGTDTIL-EDFEFHELEEV 151
Query: 306 V-----FYRGADREGHPVCYNVYGEFQDKDLYEKAFGDEEKRERFLKWRIQLLERGILDQ 360
+ Y G D+EG PV + G+ + L + ER++K+ +Q ER ++
Sbjct: 152 LQYYPHGYHGVDKEGRPVYIELLGKVEPSKLVQIT-----TVERYIKYHVQEFERAFREK 206
Query: 361 LDFSPSGICSMVQVTDLKNSPPMLGKH-----------RTVTRQALALLQDNYPEFIAKK 409
P+ CS+ + + +L H R + R + D YPE + +
Sbjct: 207 F---PA--CSIAAKKHIDTTTTILDVHGVGWKNFSKIARDLVRCMQKIDGDYYPETLHQM 261
Query: 410 IFINVPWWYIAANKMVSPFLTQRTKSKIIFCTAAKSAETLFRYIAPEQVPVQFGG 464
+N + V L +T SK I K L I Q+P GG
Sbjct: 262 FIVNAGPGFKLIWSTVKGLLDPKTSSK-IHVLGTKYQHRLLEAIDSSQLPEFLGG 315
>Os01g0701900 Similar to Phosphatidylinositol transfer-like protein III
Length = 671
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 100/230 (43%), Gaps = 31/230 (13%)
Query: 253 ERTD--TVLLKFLRAREFKVKEAMAMLKAAVLWRKRFGIDAVLAADLGLPELENVV---- 306
ER D V+L+FL+AR+F + +A M + WRK FG D + D EL++V+
Sbjct: 180 ERHDDYHVMLRFLKARKFDIDKAKHMWSEMLRWRKEFGADNIEEFDYS--ELDDVLECYP 237
Query: 307 -FYRGADREGHPVCYNVYGEFQDKDLYEKAFGDEEKRERFLKWRIQLLERGILDQLDFSP 365
FY G D+EG PV + G+ L + D R++K+ ++ E+ + Q+ F
Sbjct: 238 QFYHGVDKEGRPVYIELIGKVDPNKLVQVTTID-----RYVKYHVKESEKCL--QMRFPA 290
Query: 366 SGI--------CSM---VQVTDLKNSPPMLGKHRTVTRQALALLQDNYPEFIAKKIFINV 414
I CS VQ LKN R + + + DNYPE + + IN
Sbjct: 291 CSIAAKRHIDSCSTILDVQGVGLKN---FSKDARELIMRLQKINNDNYPETLHRLYIINA 347
Query: 415 PWWYIAANKMVSPFLTQRTKSKIIFCTAAKSAETLFRYIAPEQVPVQFGG 464
+ + FL +T SK I +K L I ++P GG
Sbjct: 348 GQGFKMLWGTIKSFLDPQTASK-IHVLGSKYQNKLLETIDESELPDFLGG 396
>Os08g0341700 Similar to Phosphatidylinositol transfer-like protein II
Length = 637
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 97/230 (42%), Gaps = 29/230 (12%)
Query: 252 DERTD-TVLLKFLRAREFKVKEAMAMLKAAVLWRKRFGIDAVLAADLGLPELENVVF--- 307
D+ D +LL+FL+AR+F ++A+ M + WRK FG D +L D EL+ V+
Sbjct: 99 DKHNDYHMLLRFLKARKFDTEKAIQMWAEMLQWRKEFGADTIL-EDFNFEELDEVLVYYP 157
Query: 308 --YRGADREGHPVCYNVYGEFQDKDLYEKAFGDEEKRERFLKWRIQLLERGILDQLDFSP 365
Y G DR+G PV G+ + L D R++K+ +Q ER ++ P
Sbjct: 158 QGYHGVDRQGRPVYIERLGKVEPNKLMHITTVD-----RYMKYHVQEFERAFHEKF---P 209
Query: 366 SGICSMVQVTDLKNSPPMLG-------KHRTVTRQALALLQ----DNYPEFIAKKIFINV 414
+ CS+ + ++ +L R L +Q D YPE + + +N
Sbjct: 210 A--CSIAAKRHIDSTTTILDVDGVGLKNFSKTARDMLGRMQKIDSDYYPETLHQMFVVNA 267
Query: 415 PWWYIAANKMVSPFLTQRTKSKIIFCTAAKSAETLFRYIAPEQVPVQFGG 464
+ V FL +T SK I K L I Q+P GG
Sbjct: 268 GNGFKLLWNTVKGFLDPKTASK-IHVLGTKFHGKLLEVIDASQLPEFLGG 316
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.133 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,380,184
Number of extensions: 511674
Number of successful extensions: 1082
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 1074
Number of HSP's successfully gapped: 11
Length of query: 585
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 479
Effective length of database: 11,501,117
Effective search space: 5509035043
Effective search space used: 5509035043
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 159 (65.9 bits)