Os05g0429400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cellular retinaldehyde binding/alpha-tocopherol transport family protein.
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Os05g0429400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cellular retinaldehyde binding/alpha-tocopherol transport family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 89.44 | 0.444 | 11.5 | 1.08 | 0.95 | 0.88 | 1.57 | -0.291 | 0.866 | 18.1 | 23.02 | 17 | -- | -- |
| 89.77 | 0.441 | 11.5 | 1.09 | 0.945 | 0.913 | 1.53 | -- | 0.869 | 18 | 23.68 | 18 | -- | -- |
| 95.38 | 0.455 | 11.5 | 1.06 | 0.957 | 0.889 | -- | -0.19 | 0.868 | 18.2 | 24.78 | 18 | -- | -- |
| 95.52 | 0.455 | 11.5 | 1.07 | 0.971 | 0.859 | -- | -- | 0.87 | 18.3 | 25.59 | 18 | -- | -- |
| 138.33 | 0.551 | 11.4 | 1.02 | -- | 0.815 | -- | 0.104 | 0.839 | -- | 7.88 | 9 | -- | -- |
| 106.74 | 0.484 | 11.5 | 1.07 | 1.31 | -- | 0.723 | -- | 0.835 | 20.8 | -- | -- | -- | -- |
| 108.44 | 0.488 | 11.5 | 1.04 | 1.3 | -- | -- | -- | 0.834 | 20.9 | -- | -- | -- | -- |
| 138.35 | 0.55 | 11.4 | 1.02 | -- | 0.814 | -- | -- | 0.84 | -- | 7.608 | 6 | -- | -- |
| 125.81 | 0.522 | 11.5 | -- | 0.947 | 0.835 | -- | -- | 0.762 | 18.5 | 25.6 | 18 | -- | -- |
| 205.55 | 0.67 | 11.4 | 1.04 | -- | -- | -- | -- | 0.825 | -- | -- | -- | -- | -- |
| 137.03 | 0.548 | 11.5 | -- | 1.3 | -- | -- | -- | 0.718 | 21 | -- | -- | -- | -- |
| 165.13 | 0.6 | 11.5 | -- | -- | 0.844 | -- | -- | 0.715 | -- | 10 | 14 | -- | -- |
| 234.18 | 0.714 | 11.5 | -- | -- | -- | -- | -- | 0.709 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 84.64 | wind | 1e+00 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 2 | 85.76 | wind | 1e+00 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 3 | 86.96 | humidity | 8e+01 | 270 | > th | dose independent | rect. | 23 | 15 |
| 5 | 87.47 | humidity | 8e+01 | 90 | < th | dose independent | rect. | 23 | 17 |
| 8 | 87.68 | humidity | 8e+01 | 10 | < th | dose independent | rect. | 23 | 17 |
| 11 | 87.73 | wind | 1e+00 | 43200 | > th | dose independent | rect. | 1 | 5 |
| 13 | 87.82 | wind | 1e+00 | 43200 | < th | dose independent | rect. | 2 | 5 |
| 14 | 87.85 | humidity | 8e+01 | 90 | < th | dose independent | sin | 3 | NA |
| 16 | 87.88 | humidity | 9e+01 | 10 | < th | dose dependent | rect. | 20 | 20 |
| 18 | 87.93 | wind | 1e+00 | 43200 | > th | dose independent | rect. | 3 | 3 |
| 26 | 88.07 | wind | 1e+00 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 29 | 88.12 | humidity | 8e+01 | 1440 | > th | dose independent | rect. | 3 | 13 |
| 31 | 88.14 | humidity | 8e+01 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 33 | 88.15 | humidity | 8e+01 | 1440 | > th | dose independent | rect. | 24 | 16 |
| 36 | 88.20 | humidity | 8e+01 | 1440 | < th | dose independent | rect. | 3 | 12 |
| 37 | 88.20 | humidity | 8e+01 | 1440 | < th | dose independent | rect. | 24 | 15 |
| 38 | 88.21 | humidity | 9e+01 | 90 | < th | dose dependent | rect. | 20 | 19 |
| 66 | 88.36 | wind | 1e+00 | 43200 | < th | dose dependent | rect. | 2 | 5 |
| 87 | 88.47 | humidity | 8e+01 | 1440 | > th | dose independent | sin | 3 | NA |
| 91 | 88.50 | humidity | 8e+01 | 1440 | < th | dose independent | sin | 4 | NA |
| 97 | 88.52 | humidity | 8e+01 | 90 | < th | dose independent | rect. | 5 | 11 |
| 112 | 88.61 | humidity | 8e+01 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 151 | 88.85 | humidity | 7e+01 | 270 | > th | dose dependent | rect. | 22 | 17 |
| 162 | 88.93 | humidity | 7e+01 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 163 | 88.94 | humidity | 8e+01 | 270 | > th | dose independent | sin | 7 | NA |
| 179 | 89.04 | humidity | 7e+01 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 213 | 89.24 | humidity | 7e+01 | 1440 | > th | dose dependent | rect. | 3 | 13 |
| 214 | 89.25 | humidity | 8e+01 | 10 | < th | dose independent | rect. | 20 | 20 |
| 228 | 89.36 | humidity | 7e+01 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 229 | 89.37 | humidity | 7e+01 | 1440 | > th | dose dependent | rect. | 1 | 15 |
| 256 | 89.46 | humidity | 7e+01 | 1440 | > th | dose dependent | rect. | 23 | 18 |
| 352 | 89.81 | humidity | 7e+01 | 1440 | > th | dose independent | rect. | 19 | 19 |
| 353 | 89.81 | humidity | 7e+01 | 1440 | > th | dose dependent | sin | 3 | NA |
| 431 | 89.97 | humidity | 9e+01 | 1440 | < th | dose dependent | rect. | 2 | 12 |
| 433 | 89.98 | radiation | 2e+01 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 475 | 90.10 | humidity | 9e+01 | 10 | < th | dose dependent | rect. | 7 | 9 |
| 480 | 90.11 | humidity | 9e+01 | 1440 | < th | dose dependent | rect. | 23 | 15 |
| 485 | 90.12 | radiation | 2e+01 | 10 | < th | dose dependent | no | NA | NA |
| 489 | 90.13 | humidity | 9e+01 | 90 | < th | dose dependent | sin | 4 | NA |
| 550 | 90.23 | humidity | 8e+01 | 1440 | < th | dose dependent | rect. | 20 | 17 |
| 551 | 90.24 | humidity | 7e+01 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 563 | 90.26 | radiation | 2e+01 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 623 | 90.41 | humidity | 9e+01 | 10 | < th | dose dependent | sin | 3 | NA |
| 627 | 90.44 | radiation | 1e+01 | 90 | > th | dose independent | sin | 1 | NA |
| 628 | 90.44 | humidity | 7e+01 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 660 | 90.50 | atmosphere | 1e+03 | 270 | > th | dose independent | rect. | 13 | 18 |
| 666 | 90.52 | atmosphere | 1e+03 | 270 | > th | dose independent | rect. | 11 | 22 |
| 670 | 90.53 | precipitation | 1e-01 | 4320 | > th | dose dependent | rect. | 8 | 6 |
| 672 | 90.53 | humidity | 9e+01 | 90 | < th | dose dependent | rect. | 3 | 12 |
| 685 | 90.55 | precipitation | 1e-01 | 4320 | > th | dose dependent | rect. | 11 | 3 |
| 709 | 90.60 | humidity | 9e+01 | 1440 | < th | dose dependent | sin | 5 | NA |
| 721 | 90.62 | humidity | 9e+01 | 270 | < th | dose dependent | sin | 7 | NA |
| 726 | 90.63 | humidity | 8e+01 | 30 | < th | dose independent | rect. | 9 | 7 |
| 759 | 90.69 | humidity | 7e+01 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 767 | 90.71 | humidity | 5e+01 | 90 | > th | dose dependent | sin | 6 | NA |
| 771 | 90.72 | precipitation | 1e-01 | 4320 | > th | dose independent | rect. | 11 | 3 |
| 785 | 90.75 | humidity | 5e+01 | 270 | > th | dose dependent | sin | 8 | NA |
| 831 | 90.82 | atmosphere | 1e+03 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 853 | 90.84 | radiation | 2e+01 | 10 | < th | dose dependent | rect. | 6 | 23 |
| 861 | 90.86 | atmosphere | 1e+03 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 881 | 90.89 | humidity | 7e+01 | 270 | > th | dose dependent | rect. | 22 | 13 |
| 908 | 90.95 | radiation | 1e+01 | 90 | > th | dose independent | rect. | 17 | 23 |
| 938 | 91.01 | radiation | 1e+01 | 90 | > th | dose independent | rect. | 6 | 10 |