BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0373400 Os05g0373400|AK073796
(466 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0373400 Paraneoplastic encephalomyelitis antigen famil... 785 0.0
Os01g0938200 Similar to RNA-binding protein BRUNOL5 (Fragment) 690 0.0
Os07g0663300 Similar to RNA-binding protein BRUNOL5 (Fragment) 384 e-107
Os09g0123200 Paraneoplastic encephalomyelitis antigen famil... 171 1e-42
Os07g0584500 RNA-binding region RNP-1 (RNA recognition moti... 75 1e-13
Os09g0565200 Similar to Nucleic acid-binding protein precursor 74 2e-13
Os10g0457000 RNA-binding region RNP-1 (RNA recognition moti... 72 8e-13
Os02g0815200 Similar to 29 kDa ribonucleoprotein, chloropla... 72 9e-13
Os10g0151800 RNA-binding region RNP-1 (RNA recognition moti... 72 1e-12
Os08g0557100 Similar to Nucleic acid-binding protein precursor 69 6e-12
Os09g0279500 Similar to Plastid-specific 30S ribosomal prot... 69 1e-11
AK108879 67 4e-11
>Os05g0373400 Paraneoplastic encephalomyelitis antigen family protein
Length = 466
Score = 785 bits (2026), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/422 (93%), Positives = 393/422 (93%)
Query: 45 SVKLFVGQVPKQMTEDELAAMFAAVAVVDEVTLIRDKATKASRGCCFLICPSREEADKAV 104
SVKLFVGQVPKQMTEDELAAMFAAVAVVDEVTLIRDKATKASRGCCFLICPSREEADKAV
Sbjct: 45 SVKLFVGQVPKQMTEDELAAMFAAVAVVDEVTLIRDKATKASRGCCFLICPSREEADKAV 104
Query: 105 NAYHNKRTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVTDAEMTDLFSQYGNIKDLQ 164
NAYHNKRTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVTDAEMTDLFSQYGNIKDLQ
Sbjct: 105 NAYHNKRTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVTDAEMTDLFSQYGNIKDLQ 164
Query: 165 ILRGSQQTSKAGCAFLKYETKEQALAAIEALNGKHKIEGSSVPLVVKWADTEKERQARKA 224
ILRGSQQTSKAGCAFLKYETKEQALAAIEALNGKHKIEGSSVPLVVKWADTEKERQARKA
Sbjct: 165 ILRGSQQTSKAGCAFLKYETKEQALAAIEALNGKHKIEGSSVPLVVKWADTEKERQARKA 224
Query: 225 QKAQFHPSNMSNPNAMQQSSLFGAMQMGYVPQYNGYGYQPQGTYGLMQYPLSPMQNQAAF 284
QKAQFHPSNMSNPNAMQQSSLFGAMQMGYVPQYNGYGYQPQGTYGLMQYPLSPMQNQAAF
Sbjct: 225 QKAQFHPSNMSNPNAMQQSSLFGAMQMGYVPQYNGYGYQPQGTYGLMQYPLSPMQNQAAF 284
Query: 285 PNMVQSVNQGSSIRGVNSELSPNSAPRSFNSMQLGSPYSPVPSMQYPGSYPGNAINSRPF 344
PNMVQSVNQGSSIRGVNSELSPNSAPRSFNSMQLGSPYSPVPSMQYPGSYPGNAINSRPF
Sbjct: 285 PNMVQSVNQGSSIRGVNSELSPNSAPRSFNSMQLGSPYSPVPSMQYPGSYPGNAINSRPF 344
Query: 345 VNSHNSMKVXXXXXXXXXXXXXXXXXGPQIEGPPGANLFIYHIPQEFGDQDLAGAFQGFG 404
VNSHNSMKV GPQIEGPPGANLFIYHIPQEFGDQDLAGAFQGFG
Sbjct: 345 VNSHNSMKVPNANASSPTSSSTSSNPGPQIEGPPGANLFIYHIPQEFGDQDLAGAFQGFG 404
Query: 405 RVLSAKVFVDKATGLSKCFGFISYDSPASAQTAISMMNGYXXXXXXXXXXXXRDNSKHSK 464
RVLSAKVFVDKATGLSKCFGFISYDSPASAQTAISMMNGY RDNSKHSK
Sbjct: 405 RVLSAKVFVDKATGLSKCFGFISYDSPASAQTAISMMNGYQLGGKKLKVQLKRDNSKHSK 464
Query: 465 TY 466
TY
Sbjct: 465 TY 466
>Os01g0938200 Similar to RNA-binding protein BRUNOL5 (Fragment)
Length = 460
Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/422 (79%), Positives = 360/422 (85%)
Query: 45 SVKLFVGQVPKQMTEDELAAMFAAVAVVDEVTLIRDKATKASRGCCFLICPSREEADKAV 104
SVKLFVGQVPK MTE EL AMF VA+VDEVT+I+DKATKASRGCCFLICPSREEADKAV
Sbjct: 39 SVKLFVGQVPKHMTEAELLAMFQEVAIVDEVTVIKDKATKASRGCCFLICPSREEADKAV 98
Query: 105 NAYHNKRTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVTDAEMTDLFSQYGNIKDLQ 164
NAYHNK TLPGASSPLQVKYADGELERLEHKLFIGMLPKNVTD E+TDLFS+YGNIKDLQ
Sbjct: 99 NAYHNKHTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVTDTELTDLFSKYGNIKDLQ 158
Query: 165 ILRGSQQTSKAGCAFLKYETKEQALAAIEALNGKHKIEGSSVPLVVKWADTEKERQARKA 224
ILRGSQQTSKAGCAFLKYETKEQA+AAIEALNGKHKIEGSSVPLVVKWADTEKERQARKA
Sbjct: 159 ILRGSQQTSKAGCAFLKYETKEQAVAAIEALNGKHKIEGSSVPLVVKWADTEKERQARKA 218
Query: 225 QKAQFHPSNMSNPNAMQQSSLFGAMQMGYVPQYNGYGYQPQGTYGLMQYPLSPMQNQAAF 284
QKAQ SNM + + MQQSSLFGA+QMGY+PQYNG+GYQP GTYGLMQYPLSPMQNQA F
Sbjct: 219 QKAQLQSSNMPSASPMQQSSLFGALQMGYMPQYNGFGYQPPGTYGLMQYPLSPMQNQATF 278
Query: 285 PNMVQSVNQGSSIRGVNSELSPNSAPRSFNSMQLGSPYSPVPSMQYPGSYPGNAINSRPF 344
PNMVQ VNQG+SIRGVN ELSPNS PRSFN+MQL SPY PVP +QY GSYPG +N+RPF
Sbjct: 279 PNMVQPVNQGNSIRGVNPELSPNSVPRSFNAMQLSSPYPPVPGVQYAGSYPGGLMNNRPF 338
Query: 345 VNSHNSMKVXXXXXXXXXXXXXXXXXGPQIEGPPGANLFIYHIPQEFGDQDLAGAFQGFG 404
NS +S+KV G QIEGPPGANLFIYHIPQ++GDQDL+ AFQ FG
Sbjct: 339 GNSFSSIKVPIVNANSPASSSPSSNPGGQIEGPPGANLFIYHIPQDYGDQDLSNAFQRFG 398
Query: 405 RVLSAKVFVDKATGLSKCFGFISYDSPASAQTAISMMNGYXXXXXXXXXXXXRDNSKHSK 464
RVLSAKVFVDKATG SKCFGF+SYDSPASAQ AI +MNG+ RDNSKHSK
Sbjct: 399 RVLSAKVFVDKATGSSKCFGFVSYDSPASAQAAIGVMNGFQLGSKKLKVQLKRDNSKHSK 458
Query: 465 TY 466
+
Sbjct: 459 PF 460
>Os07g0663300 Similar to RNA-binding protein BRUNOL5 (Fragment)
Length = 427
Score = 384 bits (986), Expect = e-107, Method: Compositional matrix adjust.
Identities = 211/407 (51%), Positives = 270/407 (66%), Gaps = 16/407 (3%)
Query: 46 VKLFVGQVPKQMTEDELAAMFAAVAVVDEVTLIRDKATKASRGCCFLICPSREEADKAVN 105
V+LFVGQVP+ M E+++ A+ A A D+ T+IRD+AT ASRGCCF++C SREEADKA+
Sbjct: 12 VRLFVGQVPRSMAEEDILAVVRAAARADDATVIRDRATGASRGCCFVVCSSREEADKAIA 71
Query: 106 AYHNKRTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVTDAEMTDLFSQYGNIKDL 163
AYHNK TLPGAS +QVKYADGELERL E KLFIGMLP++V + E++ LFSQYGNI+ L
Sbjct: 72 AYHNKCTLPGASRAMQVKYADGELERLAAEQKLFIGMLPRDVKENEVSALFSQYGNIRQL 131
Query: 164 QILRGSQQTSK-AGCAFLKYETKEQALAAIEALNGKHKI-EGSSVPLVVKWADTEKERQA 221
++LR Q+T K A CA L++ +KE A AAIEALNG + GSS LVVK ADTE+E+QA
Sbjct: 132 KVLRSPQKTRKAAACAILEFGSKEHARAAIEALNGTRVVFNGSSATLVVKLADTEREKQA 191
Query: 222 RKAQKAQFHPSNMSNPNAM-QQSSLFGAMQMGYVPQYNGYGYQPQGTYGLMQYPLSPMQN 280
RKAQKAQ PS Q S+ GA QM ++P YN Y+ G YG + PL
Sbjct: 192 RKAQKAQAQPSKPLRFYLFPQLLSISGAPQMSFLPPYNVLDYKVPGHYGHTKNPL----- 246
Query: 281 QAAFPNMVQSVNQGSSIRGVNSELSPNSAPRSFNSMQ----LGSPYSPVPSMQYPGSYPG 336
A + M VNQG+ ++G+N+ + P + P+ N +Q + PY + + YP SY G
Sbjct: 247 -ALYSTMYPHVNQGNLLQGLNTNIFPGTDPKISNLIQSAGYIQPPYPDLSGLHYPVSYAG 305
Query: 337 NAINSRPFVNSHNSMKVXXXXXXXXXXXXXXXXXGPQIEGPPGANLFIYHIPQEFGDQDL 396
+ P S + + G +IEGPP ANLF+Y IPQE+GD+DL
Sbjct: 306 ALVGDTPQYFSDGKVNI-PNSHSNHASSAANTKIGSKIEGPPRANLFVYDIPQEYGDEDL 364
Query: 397 AGAFQGFGRVLSAKVFVDKATGLSKCFGFISYDSPASAQTAISMMNG 443
A FQ FGR+LS KVF+D+ATG+SKCFGF+SYD+PASAQ AI MNG
Sbjct: 365 ANLFQEFGRILSTKVFIDRATGVSKCFGFVSYDTPASAQAAIRRMNG 411
>Os09g0123200 Paraneoplastic encephalomyelitis antigen family protein
Length = 637
Score = 171 bits (432), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 77/177 (43%), Positives = 121/177 (68%), Gaps = 4/177 (2%)
Query: 46 VKLFVGQVPKQMTEDELAAMFAAVAVVDEVTLIRDKATKASRGCCFLICPSREEADKAVN 105
VKLF+G VP+ TED++ +F V EV LI+D+ T +GCCF+ + EEA++A+
Sbjct: 21 VKLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIR 80
Query: 106 AYHNKRTLPGASSPLQVKYADGELER---LEHKLFIGMLPKNVTDAEMTDLFSQYGNIKD 162
A HN+ TLPGA P+QV+YADGE ER +EHKLF+ L K T E+ ++F+ YG+++D
Sbjct: 81 ALHNQYTLPGAMGPIQVRYADGERERHGAIEHKLFVASLNKQATAKEIEEIFAPYGHVED 140
Query: 163 LQILRGSQQTSKAGCAFLKYETKEQALAAIEALNGKHKIEGSSVPLVVKWADTEKER 219
+ I++ + S+ GC F+K+ ++E ALAA+ AL+G + + G PL++++AD ++ R
Sbjct: 141 VYIMKDGMRQSR-GCGFVKFSSREPALAAMSALSGNYVMRGCEQPLIIRFADPKRPR 196
>Os07g0584500 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 472
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 98/244 (40%), Gaps = 29/244 (11%)
Query: 45 SVKLFVGQVPKQMTEDELAAMFAAVAVVDEVTLIRDKATKASRGCCFLICPSREEADKAV 104
S KLFVG + + ED L F+ V E ++RD+ T +RG F++ A++
Sbjct: 5 SGKLFVGGISWETDEDRLREYFSRFGEVTEAVIMRDRNTGRARGFGFVVFTDAGVAERVT 64
Query: 105 NAYH--------NKRTLPGASSPLQVKYADGELER----LEHKLFIGMLPKNVTDAEMTD 152
H K+ +P + K + K+F+G L NVT+ E
Sbjct: 65 MDKHMIDGRMVEAKKAVPRDDQSITSKNNGSSIGSPGPGRTRKIFVGGLASNVTEVEFRR 124
Query: 153 LFSQYGNIKDLQILRGSQQTSKAGCAFLKYETKEQALAAIEA----LNGKHKIEGSSVPL 208
F Q+G I D+ ++ G F+ Y++++ A+ LNGK +VP
Sbjct: 125 YFEQFGVITDVVVMYDHNTQRPRGFGFITYDSEDAVDKALHKNFHELNGKMVEVKRAVP- 183
Query: 209 VVKWADTEKERQARKAQKAQFHPSNMSNPNAMQQSSLFGAMQMGYVPQ-YNGYGYQPQGT 267
KE+ A ++ P+ N + S GY P GYG + G
Sbjct: 184 --------KEQSPGPAARS---PAGGQNYAMSRVHSFLNGFNQGYNPNPIGGYGMRVDGR 232
Query: 268 YGLM 271
YGL+
Sbjct: 233 YGLL 236
>Os09g0565200 Similar to Nucleic acid-binding protein precursor
Length = 322
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 12/161 (7%)
Query: 47 KLFVGQVPKQMTEDELAAMFAAVAVVDEVTLIRDKATKASRGCCFLICPSREEADKAVNA 106
K++VG +P + + LA +F +V+ +I ++ T SRG F+ + EEA+KAV
Sbjct: 144 KVYVGNLPYDIDSERLAQLFEQAGIVEVSEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 203
Query: 107 YHNKRTLPGASSPLQVKYADGELERLEH---------KLFIGMLPKNVTDAEMTDLFSQY 157
+H L V A R+E ++++G LP V D+ + LFS++
Sbjct: 204 FHRYDV---DGRLLTVNKAAPRGARVERPPRQFGPSFRIYVGNLPWQVDDSRLVQLFSEH 260
Query: 158 GNIKDLQILRGSQQTSKAGCAFLKYETKEQALAAIEALNGK 198
G + D +++ + G F+ T+E+ AI AL+G+
Sbjct: 261 GKVVDARVVYDRETGRSRGFGFVTMATQEELDDAIAALDGQ 301
>Os10g0457000 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 355
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 94/184 (51%), Gaps = 12/184 (6%)
Query: 49 FVGQVPKQMTEDELAAMFAAVAVVDEVTLIRDKATKASRGCCFLICPSREEADKAVNAYH 108
+VG + Q++E+ L +F V V + +D+ T +G F+ S E+AD A+
Sbjct: 28 YVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKIL- 86
Query: 109 NKRTLPGASSPLQVKYADGELERLE--HKLFIGMLPKNVTDAEMTDLFSQYGNI-KDLQI 165
N L G P++V A + + L+ LFIG L +V + + D FS +G I + +I
Sbjct: 87 NMIKLYG--KPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKI 144
Query: 166 LRGSQQTSKAGCAFLKYETKEQALAAIEALNGKHKIEGSSVPLVVKWA---DTEKERQAR 222
+R + + G F+ Y++ E + AIEA+N +H + P+ V +A DT+ ER
Sbjct: 145 MRDPETGNSRGFGFVSYDSFESSDQAIEAMNNQHL---CNRPITVSYAYKKDTKGERHGT 201
Query: 223 KAQK 226
A++
Sbjct: 202 PAER 205
>Os02g0815200 Similar to 29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29)
Length = 316
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 86/172 (50%), Gaps = 18/172 (10%)
Query: 45 SVKLFVGQVPKQMTEDELAAMFAAVAVVDEVTLIRDKATKASRGCCFLICPSREEADKAV 104
+ KL+ G +P +LA + A + V ++ D+AT SRG F+ + E+ ++ +
Sbjct: 144 TTKLYFGNLPYNCDSAQLAGIVQDYATPEMVEVLYDRATGRSRGFAFVTMSTIEDCEQVI 203
Query: 105 N----AYHNKRTLPGASSPLQVKYADGELERL------EHKLFIGMLPKNVTDAEMTDLF 154
+ ++ RT+ +V +AD +L EHKLF+G L VT +T++F
Sbjct: 204 KNLDGSLYSGRTM-------RVNFADKPKPKLPLYPETEHKLFVGNLSWTVTSEMLTEMF 256
Query: 155 SQYGNIKDLQILRGSQQTSKAGCAFLKYETKEQALAAIEALNGKHKIEGSSV 206
+ GN+ ++L + G F+ Y TKE+ A+ +LNG ++EG +
Sbjct: 257 QKCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDEALSSLNGT-ELEGREI 307
>Os10g0151800 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 472
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 92/175 (52%), Gaps = 21/175 (12%)
Query: 47 KLFVGQVPKQMTEDELAAMFAAVAVVDEVTLIRDKATKASRGCCFLICPSREEADKAVNA 106
++F+G +P+ TED+L + A + EV L++DK TK ++G F+ ++ A +A+
Sbjct: 110 EVFIGGLPRDTTEDDLHELCEAFGEISEVRLMKDKETKENKGFAFVTFTGKDGAQRAIED 169
Query: 107 YHNK----RTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVTDAEMTDLFSQYG-NIK 161
H+K RTL + L + +H+LF+G +PK +++ E+ ++ G +
Sbjct: 170 LHDKEHKGRTLRCS------------LSQAKHRLFVGNVPKGLSEDELRNIIQGKGPGVV 217
Query: 162 DLQILRGSQQTSK-AGCAFLKYETKEQALAAIEALNGKH-KIEGSSVPLVVKWAD 214
++++ + S+ G F++Y A A + L+ + K++GS L V WA+
Sbjct: 218 NIEMFKDLHDPSRNRGFLFVEYYNHACADYAKQKLSAPNFKVDGSQ--LTVSWAE 270
>Os08g0557100 Similar to Nucleic acid-binding protein precursor
Length = 194
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 89/182 (48%), Gaps = 15/182 (8%)
Query: 47 KLFVGQVPKQMTEDELAAMFAAVAVVDEVTLIRDKATKASRGCCFLICPSREEADKAVNA 106
K++VG +P + + LA +F VV+ +I ++ T SRG F+ + EEADKA+
Sbjct: 17 KVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEM 76
Query: 107 YHNKRTLPGASSPLQVKYADGELERLEH---------KLFIGMLPKNVTDAEMTDLFSQY 157
N+ + G L V A R+E + ++G LP V D+ + LFS++
Sbjct: 77 L-NRYDING--RLLNVNRAAPRGSRVERPPRQFAPAFRAYVGNLPWQVDDSRLLQLFSEH 133
Query: 158 GNIKDLQILRGSQQTSKAGCAFLKYETKEQALAAIEALNGKHKIEGSSVPLVVKWADTEK 217
G + + ++ + G F+ +KE+ AI AL+G+ +++G PL V A
Sbjct: 134 GEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQ-ELDGR--PLRVNVAAERP 190
Query: 218 ER 219
+R
Sbjct: 191 QR 192
>Os09g0279500 Similar to Plastid-specific 30S ribosomal protein 2, chloroplast
precursor (PSRP- 2)
Length = 245
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 85/174 (48%), Gaps = 18/174 (10%)
Query: 47 KLFVGQVPKQMTEDELAAMFAAVAVVDEVTLIRDKATKASRGCCFLICPSREEADKAVNA 106
KL+VG +P+ +T DELAAMFA V+ ++ DK T SR F+ + EEA+ A+ +
Sbjct: 71 KLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAIES 130
Query: 107 YHNKRTLPGASSPLQVKYADGELERLE--------------HKLFIGMLPKNVTDAEMTD 152
N+ + G ++V + L ++ +K+++G L K+VT + +
Sbjct: 131 L-NETEVGGRK--IKVNVTESFLPNIDRSAPEPEPVFVDSQYKVYVGNLAKSVTTEMLKN 187
Query: 153 LFSQYGNIKDLQILRGSQQTSKAGCAFLKYETKEQALAAIEALNGKHKIEGSSV 206
FS+ G + + R G F+ + ++E+ AA+ N ++EG +
Sbjct: 188 FFSEKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNNA-ELEGQPI 240
>AK108879
Length = 670
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 90/184 (48%), Gaps = 7/184 (3%)
Query: 48 LFVGQVPKQMTEDELAAMFAAVAVVDEVTLIRDKATKASRGCCFLICPSREEADKAVNAY 107
L+VG++ +TE L +F+ + V + + RD T+ S G ++ S + ++A+ +
Sbjct: 46 LYVGELHPDVTEAMLYEIFSQIGPVSSIRVCRDAITRRSLGYAYVNFHSPADCERAIESL 105
Query: 108 HNKRTLPGASSPLQVKYADGELERLE-HKLFIGMLPKNVTDAEMTDLFSQYGNIKDLQIL 166
N + G L D L R +FI L K + + + D FS +GNI +++
Sbjct: 106 -NYALIKGQPCRLMWSQRDPALRRSGVGNIFIKNLDKTIDNKALHDTFSAFGNILSCKVV 164
Query: 167 RGSQQTSKAGCAFLKYETKEQALAAIEALNGKHKIEGSSVPLVVKWADTEKERQARKAQ- 225
Q S+ G F+ YET+E A AI+ +NG + + + + V + KER + +
Sbjct: 165 TDDQGASR-GFGFVHYETREAADLAIDKVNG---MLLNGIKVFVGHHISRKERISHLEEL 220
Query: 226 KAQF 229
KAQF
Sbjct: 221 KAQF 224
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 100/198 (50%), Gaps = 22/198 (11%)
Query: 48 LFVGQVPKQMTEDELAAMFAAVAVVDEVTLIRDKATKASRGCCFLICPSREEADKAVNAY 107
+F+ + + +T++EL A+F + L RD++ K SRG F+ E+A KAV A
Sbjct: 227 VFIKNLDEAVTDEELQALFEPFGEIQSAILQRDESGK-SRGFGFINFVEHEDAQKAVEAL 285
Query: 108 HN-----KRTLPG-------ASSPLQVKYADGELERLEH----KLFIGMLPKNVTDAEMT 151
++ KR G + L+ ++ +LER+ L++ L + VT+ ++
Sbjct: 286 NDVEVNGKRIFVGRAQKKSERTEELRRQFEALKLERMSKFHGVNLYVKNLDEMVTEDQLR 345
Query: 152 DLFSQYGNIKDLQILRGSQQTSKAGCAFLKYETKEQALAAIEALNGKHKIEGSSVPLVVK 211
F+ +G+I L+++ + S+ G F+ + E+A AI +NG+ + G PL V
Sbjct: 346 MEFTPFGSISSLRVMVDEKGVSR-GFGFVCFSAPEEAARAISEMNGR-MVNGK--PLYVA 401
Query: 212 WADTEKERQAR-KAQKAQ 228
A ER+A+ +AQ AQ
Sbjct: 402 LAQRRDERRAQLEAQFAQ 419
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.130 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,760,645
Number of extensions: 504834
Number of successful extensions: 2094
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 2106
Number of HSP's successfully gapped: 14
Length of query: 466
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 362
Effective length of database: 11,605,545
Effective search space: 4201207290
Effective search space used: 4201207290
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)