BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0129100 Os05g0129100|J013001G02
(180 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0129100 Aminotransferase class-III family protein 358 1e-99
Os07g0461900 Similar to Acetylornithine aminotransferase, m... 295 9e-81
Os03g0643300 Similar to AER123Wp 93 9e-20
Os03g0338000 Similar to Alanine:glyoxylate aminotransferase... 92 2e-19
Os05g0475400 Similar to Alanine:glyoxylate aminotransferase... 92 3e-19
Os03g0171900 Similar to Alanine:glyoxylate aminotransferase... 82 3e-16
Os02g0112900 Similar to Viroid RNA-binding protein (Fragment) 81 4e-16
Os04g0614600 Similar to Viroid RNA-binding protein (Fragment) 79 2e-15
Os08g0205900 Similar to Viroid RNA-binding protein (Fragment) 77 7e-15
Os04g0614500 Aminotransferase class-III family protein 76 1e-14
>Os05g0129100 Aminotransferase class-III family protein
Length = 180
Score = 358 bits (919), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 180/180 (100%), Positives = 180/180 (100%)
Query: 1 TQVQCGLGRTGYLWAYEAYGVLPDIMTLAKPLAGGLPIGVVLVTEKVASAINFGDHGTTF 60
TQVQCGLGRTGYLWAYEAYGVLPDIMTLAKPLAGGLPIGVVLVTEKVASAINFGDHGTTF
Sbjct: 1 TQVQCGLGRTGYLWAYEAYGVLPDIMTLAKPLAGGLPIGVVLVTEKVASAINFGDHGTTF 60
Query: 61 GGGPLVCQAALTTLDKIQKPGFLAEVAKKGENFKQLLSTKLSGNAHVKEIRGIGLIVGIE 120
GGGPLVCQAALTTLDKIQKPGFLAEVAKKGENFKQLLSTKLSGNAHVKEIRGIGLIVGIE
Sbjct: 61 GGGPLVCQAALTTLDKIQKPGFLAEVAKKGENFKQLLSTKLSGNAHVKEIRGIGLIVGIE 120
Query: 121 LDVPAGPLVDACLDRGVIVLTAGKGNVVRLVPPLIISEKELEQAAEVIRDCLPALDASTS 180
LDVPAGPLVDACLDRGVIVLTAGKGNVVRLVPPLIISEKELEQAAEVIRDCLPALDASTS
Sbjct: 121 LDVPAGPLVDACLDRGVIVLTAGKGNVVRLVPPLIISEKELEQAAEVIRDCLPALDASTS 180
>Os07g0461900 Similar to Acetylornithine aminotransferase, mitochondrial
precursor (EC 2.6.1.11) (ACOAT) (Acetylornithine
transaminase) (AOTA)
Length = 328
Score = 295 bits (756), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 145/148 (97%), Positives = 148/148 (100%)
Query: 2 QVQCGLGRTGYLWAYEAYGVLPDIMTLAKPLAGGLPIGVVLVTEKVASAINFGDHGTTFG 61
+VQCGLGRTGYLWAYEAYGV+PDIMTLAKPLAGGLPIGVVLVTEKVASAIN+GDHGTTFG
Sbjct: 178 EVQCGLGRTGYLWAYEAYGVVPDIMTLAKPLAGGLPIGVVLVTEKVASAINYGDHGTTFG 237
Query: 62 GGPLVCQAALTTLDKIQKPGFLAEVAKKGENFKQLLSTKLSGNAHVKEIRGIGLIVGIEL 121
GGPLVCQAALTTLDKIQKPGFLAEVAKKGENFKQLLSTKLSGNAHVKEIRGIGLIVGIEL
Sbjct: 238 GGPLVCQAALTTLDKIQKPGFLAEVAKKGENFKQLLSTKLSGNAHVKEIRGIGLIVGIEL 297
Query: 122 DVPAGPLVDACLDRGVIVLTAGKGNVVR 149
DVPAGPLVDACLDRGVIVLTAGKGNVVR
Sbjct: 298 DVPAGPLVDACLDRGVIVLTAGKGNVVR 325
>Os03g0643300 Similar to AER123Wp
Length = 473
Score = 93.2 bits (230), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 95/179 (53%), Gaps = 9/179 (5%)
Query: 2 QVQCGLGRTGYLWAYEAYGVLPDIMTLAKPL-AGGLPIGVVLVTEKVASAINFGDHGTTF 60
++Q G+ RTG + A + + PD++ L K L AG +P+ VL + + I G+HG+TF
Sbjct: 265 EIQTGIARTGKMLACDWENIRPDVVILGKALGAGVVPVSAVLADKDIMLCIKPGEHGSTF 324
Query: 61 GGGPLVCQAALTTLDKIQKPGFLAEVAKKGENFK-QLLSTKLSGNAHVKEIRGIGLIVGI 119
GG PL A+ +L + G + AK G+ F+ QL + ++E+RG GL+ +
Sbjct: 325 GGNPLASAVAVASLKVVTDEGLVERAAKLGQEFRDQLQKVQQRFPQIIREVRGRGLLNAV 384
Query: 120 ELDVPA---GPLVDACL---DRGVIVLTAGKGNVVRLVPPLIISEKELEQAAEVIRDCL 172
+L A D C+ +RGV+ ++RL PPL IS +EL +A++ D L
Sbjct: 385 DLSNEALSPASAYDICIKLKERGVLA-KPTHDTIIRLAPPLSISPEELAEASKAFSDVL 442
>Os03g0338000 Similar to Alanine:glyoxylate aminotransferase-like protein
(Fragment)
Length = 465
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 92/186 (49%), Gaps = 12/186 (6%)
Query: 2 QVQCGLGRTG-YLWAYEAYGVLPDIMTLAKPLAGGLPIGVVLVTEKVASAINFGDHGTTF 60
+VQ G R G + W +E +GV+PDI+T+AK + G+P+G V+ T ++A + + TF
Sbjct: 280 EVQAGFARVGSHFWGFETHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAQVLTRRCYFNTF 339
Query: 61 GGGPLVCQAALTTLDKIQKPGFLAEVAKKGENFKQLLSTKLSGNAHVKEIRGIGLIVGIE 120
GG PL L L ++K G A G K L + + ++RG G ++G+E
Sbjct: 340 GGNPLCTAGGLAVLRVLEKEGLQANAHAVGSYLKDRLRALQDKHEIIGDVRGTGFMLGVE 399
Query: 121 ------LDVPAGPLVDACLDR----GVIVLTAG-KGNVVRLVPPLIISEKELEQAAEVIR 169
L PA + ++ GV+V G GNV R+ PPL ++++ + V+
Sbjct: 400 LVTDRQLKTPAKDEICRAMEHMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADFFVAVMD 459
Query: 170 DCLPAL 175
L L
Sbjct: 460 SALSKL 465
>Os05g0475400 Similar to Alanine:glyoxylate aminotransferase-like protein
(Fragment)
Length = 391
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 95/186 (51%), Gaps = 12/186 (6%)
Query: 2 QVQCGLGRTG-YLWAYEAYGVLPDIMTLAKPLAGGLPIGVVLVTEKVASAINFGDHGTTF 60
+VQ G+ RTG + W +E++GV+PDI+T+AK + G+PIG V+ T ++A + + TF
Sbjct: 206 EVQAGVARTGSHFWGFESHGVIPDIVTMAKGIGNGIPIGAVVTTPEIAQVLTRRSYFNTF 265
Query: 61 GGGPLVCQAALTTLDKIQKPGFLAEVAKKGENFKQLLSTKLSGNAHVKEIRGIGLIVGIE 120
GG P+ L ++K G K+ L+ + + ++RG G ++G+E
Sbjct: 266 GGNPVSTAGGHAVLKVLEKEKLQENAFVVGSYLKERLNKLKEKHDIIGDVRGKGFLLGVE 325
Query: 121 L----------DVPAGPLVDACLDRGVIVLTAG-KGNVVRLVPPLIISEKELEQAAEVIR 169
L V G +++ D GV+V G GNV R+ PPL ++++ + E +
Sbjct: 326 LVTDRQKKTPAKVEIGHVMNHMKDMGVLVGKGGFYGNVFRVTPPLCFTKEDSDFFIEAMD 385
Query: 170 DCLPAL 175
L L
Sbjct: 386 ISLSKL 391
>Os03g0171900 Similar to Alanine:glyoxylate aminotransferase-like protein
(Fragment)
Length = 486
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 89/186 (47%), Gaps = 12/186 (6%)
Query: 2 QVQCGLGRTG-YLWAYEAYGVLPDIMTLAKPLAGGLPIGVVLVTEKVASAINFGDHGTTF 60
+VQ G GRTG + W ++ V+PDI+T+AK + GLP+G V+ T ++A+ + TF
Sbjct: 301 EVQSGFGRTGSHYWGFQTQDVIPDIVTMAKGIGNGLPLGAVVTTPEIANVLAQKIQFNTF 360
Query: 61 GGGPLVCQAALTTLDKIQKPGFLAEVAKKGENFKQLLSTKLSGNAHVKEIRGIGLIVGIE 120
GG P+ L L + K A A G + L + + ++RG GL++G+E
Sbjct: 361 GGNPVCSVGGLAVLKVLDKEKRQAHCADVGSHLVNRLKELQQKHEIIGDVRGRGLMLGVE 420
Query: 121 L------DVPAGP----LVDACLDRGVIVLTAG-KGNVVRLVPPLIISEKELEQAAEVIR 169
L PA L + D ++V G GNV R+ PP+ + + + + +
Sbjct: 421 LVTDRKEKTPAKAETNLLFEKLKDLNILVGKGGLHGNVFRIKPPMCFTRDDADYLVDAMD 480
Query: 170 DCLPAL 175
+ L
Sbjct: 481 YAMSGL 486
>Os02g0112900 Similar to Viroid RNA-binding protein (Fragment)
Length = 483
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 98/199 (49%), Gaps = 29/199 (14%)
Query: 2 QVQCGLGRTGYLWAYEAYGVLPDIMTLAKPLAGGL-PIGVVLVTEKVASAINFGD----- 55
+V G GR G ++ + Y + PD+++LAK L+ PIG +LV+ +++ I+
Sbjct: 279 EVITGFGRLGTMFGSDLYNIKPDLVSLAKALSSAYAPIGAILVSPEISDVIHSHSNKLGT 338
Query: 56 --HGTTFGGGPLVCQAALTTLDKIQK---PGFLAEVAKKGENFKQLLSTKLSGNAHVKEI 110
HG T+ G P+ C AL L ++ PG + VA++ F++ + +G+ V E
Sbjct: 339 FAHGFTYSGHPVSCAVALEALKIYRERDIPGHVTHVAQR---FQEGIKAFAAGSPIVGET 395
Query: 111 RGIGLIVGIELDVPAGPLV-------------DACLDRGVIVLTAGKGNVVRLVPPLIIS 157
RG+GL++ E P C RG++V GN++ + PPLII+
Sbjct: 396 RGVGLLIATEFTDNKSPYELFPFEWGVGEIFGQECKKRGMMVKVL--GNLIAMSPPLIIT 453
Query: 158 EKELEQAAEVIRDCLPALD 176
+E+++ + + L A +
Sbjct: 454 REEIDKLVSIYGEALKATE 472
>Os04g0614600 Similar to Viroid RNA-binding protein (Fragment)
Length = 516
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 96/196 (48%), Gaps = 24/196 (12%)
Query: 2 QVQCGLGRTGYLWAYEAYGVLPDIMTLAKPLAGG-LPIGVVLVTEKVASAINFGD----- 55
+V GR G ++ + Y + PD++++AK L+ +PIG ++V+ +++ I+
Sbjct: 312 EVITAFGRLGTMFGSDMYNIKPDLVSMAKALSSAYVPIGAIMVSPEISDVIHSQSNKLGS 371
Query: 56 --HGTTFGGGPLVCQAALTTLDKIQKPGFLAEVAKKGENFKQLLSTKLSGNAHVKEIRGI 113
HG T+ G P+ C A+ L Q+ V + F++ + +G+ V EIRG+
Sbjct: 372 FAHGFTYSGHPVACAVAIEALKIYQERNIPDHVKQISPRFQEGVKA-FAGSPIVGEIRGV 430
Query: 114 GLIVGIEL---DVPAGPL-----VDA-----CLDRGVIVLTAGKGNVVRLVPPLIISEKE 160
GLI+G E P P V A C RG++V AG + + PPLI++ E
Sbjct: 431 GLILGTEFADNKSPNDPFPAEWGVGAIFGAECQKRGMLVRVAGDN--IMMSPPLIMTPDE 488
Query: 161 LEQAAEVIRDCLPALD 176
+E+ + D L A +
Sbjct: 489 VEELVSIYGDALKATE 504
>Os08g0205900 Similar to Viroid RNA-binding protein (Fragment)
Length = 510
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 93/184 (50%), Gaps = 26/184 (14%)
Query: 2 QVQCGLGRTGYLWAYEAYGVLPDIMTLAKPLAGG-LPIGVVLVTEKVASAI--------N 52
+V GR G ++ + Y + PD++++AK L+ +PIG +LV+ ++ I +
Sbjct: 307 EVITAFGRLGTMFGCDMYDIKPDLVSIAKALSSAYMPIGAILVSPEITDVIYSQSNKLGS 366
Query: 53 FGDHGTTFGGGPLVCQAALTTLDKIQKPGFLAEVAKKGENFKQLLSTKLSGNAHVKEIRG 112
F HG T+ G P+ C A+ L ++ + V K F++ + SG+ V EIRG
Sbjct: 367 FA-HGFTYSGHPVSCAVAIEALKIYKERNIIEHVQKIAPRFQEGIKA-FSGSPIVGEIRG 424
Query: 113 IGLIVGIEL--------DVPA----GPLVDA-CLDRGVIVLTAGKGNVVRLVPPLIISEK 159
+GLI+G E PA G L A C RG+++ AG + L PPLI++
Sbjct: 425 LGLILGTEFVDNKSPNDPFPAEWGVGSLFGAECEKRGMLIRVAGDN--IMLSPPLIMTPD 482
Query: 160 ELEQ 163
E+E+
Sbjct: 483 EVEE 486
>Os04g0614500 Aminotransferase class-III family protein
Length = 497
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 96/196 (48%), Gaps = 24/196 (12%)
Query: 2 QVQCGLGRTGYLWAYEAYGVLPDIMTLAKPLAGG-LPIGVVLVTEKV-------ASAINF 53
+V G GR G ++ + Y + PD+++LAK L+ +PIG LV+ ++ ++ I F
Sbjct: 294 EVITGFGRLGTMFGSDLYNIKPDLVSLAKALSSAYVPIGATLVSPEISDVVHSQSNKIGF 353
Query: 54 GDHGTTFGGGPLVCQAALTTLDKIQKPGFLAEVAKKGENFKQLLSTKLSGNAHVKEIRGI 113
HG T+ G P+ C AL L ++ A V + F++ + +G++ + E RG+
Sbjct: 354 FAHGFTYSGHPVSCAVALEALKIYRERNIPAHVKQISPRFQEGIKA-FAGSSIIGETRGV 412
Query: 114 GLIVGIEL---DVPAGPLV----------DACLDRGVIVLTAGKGNVVRLVPPLIISEKE 160
GL++ E P P C RG++V G+ + + PPLI+S++E
Sbjct: 413 GLLLATEFANNKSPNDPFPVEWGVAQIFGAECKKRGMLVKVV--GDEIAMSPPLIMSQRE 470
Query: 161 LEQAAEVIRDCLPALD 176
++ + + L A +
Sbjct: 471 VDGLVSIYGEALKATE 486
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.140 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,302,975
Number of extensions: 253371
Number of successful extensions: 531
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 520
Number of HSP's successfully gapped: 10
Length of query: 180
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 86
Effective length of database: 12,127,685
Effective search space: 1042980910
Effective search space used: 1042980910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)