Os03g0171900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Alanine:glyoxylate aminotransferase-like protein (Fragment).
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Os03g0171900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Alanine:glyoxylate aminotransferase-like protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 114.57 | 0.503 | 12.4 | -0.119 | 1.25 | 1.26 | 0.115 | -1.28 | -0.44 | 19.5 | 22.9 | 1266 | -- | -- |
| 115.44 | 0.5 | 12.4 | 0.24 | 1.21 | 1.2 | -0.0153 | -- | -0.344 | 19.3 | 22.58 | 1189 | -- | -- |
| 114.58 | 0.499 | 12.4 | -0.118 | 1.25 | 1.26 | -- | -1.26 | -0.441 | 19.4 | 22.8 | 1262 | -- | -- |
| 115.42 | 0.5 | 12.4 | 0.249 | 1.22 | 1.18 | -- | -- | -0.348 | 19.4 | 22.53 | 1200 | -- | -- |
| 144.81 | 0.56 | 12.4 | -0.47 | -- | 2.12 | -- | -3.12 | -0.6 | -- | 21.98 | 593 | -- | -- |
| 159.69 | 0.592 | 12.3 | 0.639 | 1.25 | -- | 0.424 | -- | -0.107 | 20.1 | -- | -- | -- | -- |
| 160.17 | 0.593 | 12.3 | 0.629 | 1.25 | -- | -- | -- | -0.105 | 20 | -- | -- | -- | -- |
| 149.97 | 0.57 | 12.3 | 0.152 | -- | 1.89 | -- | -- | -0.444 | -- | 21.33 | 653 | -- | -- |
| 116.89 | 0.504 | 12.4 | -- | 1.23 | 1.23 | -- | -- | -0.381 | 19.3 | 22.53 | 1214 | -- | -- |
| 245.7 | 0.732 | 12.3 | 0.616 | -- | -- | -- | -- | -0.121 | -- | -- | -- | -- | -- |
| 170.58 | 0.611 | 12.3 | -- | 1.25 | -- | -- | -- | -0.176 | 20 | -- | -- | -- | -- |
| 150.53 | 0.571 | 12.3 | -- | -- | 1.93 | -- | -- | -0.467 | -- | 21.23 | 653 | -- | -- |
| 255.73 | 0.746 | 12.3 | -- | -- | -- | -- | -- | -0.19 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 112.59 | radiation | 40 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 2 | 112.68 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 7 | 113.24 | temperature | 20 | 270 | > th | dose dependent | rect. | 11 | 22 |
| 14 | 113.82 | radiation | 20 | 43200 | < th | dose independent | rect. | 3 | 5 |
| 21 | 113.85 | radiation | 20 | 43200 | < th | dose independent | rect. | 18 | 14 |
| 27 | 114.01 | radiation | 20 | 43200 | < th | dose independent | rect. | 17 | 16 |
| 54 | 114.61 | radiation | 40 | 43200 | > th | dose dependent | rect. | 7 | 4 |
| 79 | 114.79 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 9 |
| 81 | 114.81 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 18 |
| 89 | 114.88 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 91 | 114.89 | temperature | 25 | 1440 | > th | dose dependent | sin | 18 | NA |
| 123 | 115.20 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 2 |
| 138 | 115.27 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 21 |
| 171 | 115.46 | radiation | 20 | 43200 | > th | dose dependent | rect. | 6 | 2 |
| 186 | 115.47 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 19 |
| 261 | 115.73 | radiation | 40 | 43200 | < th | dose independent | rect. | 15 | 20 |
| 282 | 115.78 | radiation | 40 | 43200 | < th | dose independent | rect. | 4 | 7 |
| 292 | 115.79 | radiation | 40 | 43200 | < th | dose independent | rect. | 6 | 5 |
| 350 | 115.88 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 399 | 116.05 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 2 |
| 426 | 116.22 | radiation | 40 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 456 | 116.41 | wind | 7 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 463 | 116.54 | radiation | 40 | 43200 | < th | dose independent | sin | 11 | NA |
| 464 | 116.55 | radiation | 20 | 43200 | > th | dose independent | rect. | 17 | 15 |
| 465 | 116.58 | radiation | 20 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 478 | 116.61 | radiation | 40 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 484 | 116.69 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 13 |
| 486 | 116.71 | radiation | 40 | 43200 | > th | dose dependent | sin | 10 | NA |
| 498 | 116.87 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 2 |
| 529 | 116.96 | radiation | 20 | 43200 | < th | dose independent | sin | 11 | NA |
| 538 | 116.97 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 5 |
| 548 | 117.00 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 621 | 117.33 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 4 |
| 667 | 117.54 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 670 | 117.57 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 20 |
| 720 | 117.83 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 4 |
| 727 | 117.86 | wind | 5 | 43200 | < th | dose independent | rect. | 10 | 6 |
| 776 | 118.34 | temperature | 20 | 270 | > th | dose dependent | rect. | 20 | 23 |
| 853 | 118.50 | radiation | 40 | 43200 | < th | dose dependent | rect. | 1 | 7 |
| 857 | 118.51 | radiation | 40 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 939 | 118.82 | radiation | 40 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 984 | 118.92 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 4 |