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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0112900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Viroid RNA-binding protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.91 (0.0243) R2 : 0.000817
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0312 (0.0511) R2dN8 : 0.00105 R2N8 : 0.000817
σ : 0.457
deviance : 95.8
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
91.38 0.449 2.91 0.195 0.0442 0.43 0.218 1.35 0.059 23.8 56.85 14 -- --
93.16 0.45 2.9 0.224 0.0504 0.452 -0.0156 -- 0.0687 24 57.82 15 -- --
91.54 0.446 2.91 0.193 0.0436 0.474 -- 1.36 0.0596 23.6 56.34 12 -- --
93.1 0.449 2.9 0.219 0.0418 0.512 -- -- 0.0656 23.9 59.12 15 -- --
91.66 0.446 2.91 0.191 -- 0.453 -- 1.37 0.0573 -- 56.33 12 -- --
94.55 0.456 2.91 0.217 0.0146 -- 0.0337 -- 0.0551 23.3 -- -- -- --
94.56 0.455 2.91 0.215 0.0145 -- -- -- 0.0549 23.8 -- -- -- --
93.21 0.45 2.9 0.205 -- 0.545 -- -- 0.0644 -- 60 15 -- --
94.25 0.452 2.91 -- 0.0437 0.563 -- -- 0.041 23.8 60 15 -- --
94.57 0.454 2.91 0.216 -- -- -- -- 0.0551 -- -- -- -- --
95.78 0.458 2.91 -- 0.0175 -- -- -- 0.0309 0.531 -- -- -- --
94.36 0.452 2.91 -- -- 0.54 -- -- 0.0407 -- 60 15 -- --
95.8 0.457 2.91 -- -- -- -- -- 0.0312 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 90.15 humidity 50.0 90 < th dose independent rect. 13 2
2 90.15 humidity 50.0 90 < th dose dependent rect. 13 2
5 90.19 atmosphere 1000.0 90 < th dose dependent rect. 12 1
8 90.20 atmosphere 1000.0 90 < th dose independent rect. 12 1
21 90.63 temperature 20.0 10 > th dose dependent rect. 3 1
22 90.66 radiation 1.0 43200 < th dose dependent rect. 3 1
25 90.83 temperature 20.0 10 > th dose independent rect. 3 1
28 91.06 radiation 10.0 1440 < th dose dependent rect. 21 1
34 91.17 temperature 10.0 1440 > th dose independent rect. 21 1
37 91.17 temperature 30.0 1440 < th dose independent rect. 21 1
41 91.17 humidity 50.0 1440 > th dose independent rect. 21 1
47 91.17 atmosphere 995.0 1440 > th dose independent rect. 21 1
48 91.17 radiation 1.0 1440 < th dose independent rect. 21 1
68 91.17 temperature 10.0 1440 > th dose independent rect. 22 23
72 91.25 temperature 25.0 30 > th dose independent rect. 20 1
74 91.27 humidity 90.0 10 > th dose dependent rect. 3 1
75 91.29 atmosphere 1005.0 30 > th dose dependent rect. 20 1
77 91.32 wind 9.0 1440 < th dose independent rect. 21 1
83 91.34 temperature 20.0 30 > th dose dependent rect. 20 1
87 91.36 wind 3.0 30 > th dose independent rect. 20 1
90 91.37 humidity 90.0 30 < th dose independent rect. 20 1
95 91.38 humidity 80.0 30 > th dose independent rect. 20 1
98 91.39 radiation 40.0 10 < th dose dependent rect. 4 23
99 91.40 atmosphere 1005.0 30 > th dose independent rect. 20 1
100 91.40 wind 1.0 270 < th dose dependent rect. 11 1
105 91.43 wind 1.0 270 < th dose independent rect. 11 1
107 91.44 wind 1.0 30 > th dose dependent rect. 20 1
109 91.45 wind 5.0 30 < th dose independent rect. 20 1
111 91.45 wind 3.0 10 < th dose dependent rect. 3 1
117 91.48 temperature 10.0 30 > th dose independent rect. 20 1
119 91.48 temperature 30.0 30 < th dose independent rect. 20 1
120 91.48 humidity 50.0 30 > th dose independent rect. 20 1
124 91.48 atmosphere 1010.0 30 < th dose independent rect. 20 1
126 91.48 radiation 1.0 30 < th dose independent rect. 20 1
131 91.48 precipitation 0.1 30 < th dose independent rect. 20 1
132 91.48 temperature 10.0 30 > th dose independent rect. 21 23
133 91.48 radiation 1.0 30 < th dose dependent rect. 20 1
139 91.48 precipitation 0.1 30 < th dose dependent rect. 20 1
140 91.49 humidity 50.0 30 > th dose dependent rect. 20 1
143 91.51 radiation 40.0 10 < th dose independent rect. 4 23
144 91.51 wind 9.0 30 < th dose dependent rect. 20 1
148 91.53 temperature 30.0 30 > th dose dependent rect. 13 1
151 91.54 wind 9.0 30 < th dose independent rect. 21 23
158 91.57 humidity 90.0 30 < th dose dependent rect. 20 1
172 91.69 atmosphere 1015.0 30 < th dose dependent rect. 20 1
185 91.82 temperature 30.0 30 < th dose dependent rect. 20 1
189 91.85 humidity 90.0 10 > th dose independent rect. 3 1
201 91.94 atmosphere 995.0 43200 < th dose independent rect. 4 14
206 91.95 atmosphere 995.0 43200 > th dose independent sin 0 NA
207 91.95 atmosphere 995.0 43200 < th dose independent sin 22 NA
212 91.95 atmosphere 995.0 43200 < th dose independent rect. 9 13
213 91.95 atmosphere 995.0 43200 > th dose independent rect. 4 14
242 91.96 atmosphere 995.0 43200 > th dose independent sin 21 NA
246 91.96 atmosphere 995.0 43200 < th dose independent sin 20 NA
249 91.96 atmosphere 995.0 43200 < th dose independent rect. 10 8
251 91.96 atmosphere 995.0 43200 > th dose independent rect. 10 9
269 91.96 atmosphere 995.0 43200 > th dose independent rect. 6 12
315 91.97 atmosphere 995.0 43200 < th dose independent rect. 12 6
316 91.97 atmosphere 995.0 43200 > th dose independent rect. 11 7
380 91.98 atmosphere 995.0 43200 < th dose dependent rect. 14 4
386 91.98 radiation 40.0 10 > th dose dependent rect. 14 22
420 92.00 atmosphere 995.0 43200 > th dose independent rect. 13 2
427 92.00 temperature 20.0 30 > th dose independent rect. 20 8
445 92.00 radiation 40.0 10 > th dose dependent rect. 9 3
493 92.02 atmosphere 1005.0 10 > th dose independent rect. 3 1
550 92.04 atmosphere 1000.0 270 < th dose dependent rect. 10 1
652 92.10 radiation 40.0 10 < th dose independent rect. 4 16
703 92.12 wind 9.0 1440 < th dose independent rect. 3 1
704 92.12 temperature 10.0 1440 > th dose independent rect. 3 1
707 92.12 temperature 30.0 1440 < th dose independent rect. 3 1
711 92.12 humidity 50.0 1440 > th dose independent rect. 3 1
720 92.12 atmosphere 995.0 1440 > th dose independent rect. 3 1
721 92.12 radiation 1.0 1440 < th dose independent rect. 3 1
753 92.12 temperature 10.0 1440 > th dose independent rect. 4 23
762 92.12 atmosphere 995.0 43200 > th dose independent rect. 14 23
772 92.13 atmosphere 995.0 43200 > th dose independent no NA NA
830 92.16 precipitation 0.1 10 < th dose independent rect. 3 1
833 92.16 radiation 40.0 10 < th dose independent rect. 4 8
849 92.16 precipitation 0.1 10 < th dose dependent rect. 3 1
854 92.17 wind 1.0 10 > th dose independent rect. 3 1
872 92.18 temperature 25.0 10 < th dose independent rect. 3 1
890 92.19 atmosphere 1000.0 270 < th dose independent rect. 10 3
892 92.19 atmosphere 995.0 43200 < th dose independent rect. 17 5
905 92.19 radiation 10.0 43200 < th dose dependent rect. 21 7
928 92.20 atmosphere 995.0 43200 > th dose independent rect. 17 5
952 92.20 atmosphere 995.0 43200 < th dose dependent rect. 17 5
954 92.21 atmosphere 995.0 43200 < th dose independent no NA NA
955 92.21 wind 3.0 10 < th dose independent rect. 3 1