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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0475400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Alanine:glyoxylate aminotransferase-like protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.97 (0.0315) R2 : 0.752
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.25 (0.0805) R2dC : 0.478 R2C : 0.614
β3 : -1 (0.0736) R2dE : 0.112 R2E : 0.248
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.363 (0.0663) R2dN8 : 0.0186 R2N8 : 0.0168
σ : 0.59
deviance : 160.71
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_____
C
peak time of C : 10.1
E
wheather : temperature
threshold : 18.7
memory length : 74
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 9.03
open length of G : 19.1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
159.44 0.593 5.96 0.282 2.3 -0.986 -0.643 0.445 0.411 10.2 19.1 89 8.94 19
157.98 0.585 5.97 0.25 2.27 -1 -0.59 -- 0.386 10.2 18.65 74 9.1 19
158.98 0.587 5.95 0.235 2.33 -0.948 -- 0.504 0.408 10 18.61 75 9.03 19
159.44 0.588 5.97 0.223 2.25 -1.03 -- -- 0.369 10.1 18.69 74 9.02 19.1
215.71 0.684 6.04 0.238 -- -2.2 -- 0.41 0.324 -- 14.51 363 13.1 11.5
205.11 0.671 5.95 -0.00664 2.72 -- -0.313 -- 0.383 9.2 -- -- -- --
205.46 0.671 5.95 -0.018 2.72 -- -- -- 0.382 9.2 -- -- -- --
204.6 0.666 6.05 0.0154 -- -2.76 -- -- 0.292 -- -13.28 536 11.2 11.2
160.71 0.59 5.97 -- 2.25 -1 -- -- 0.363 10.1 18.7 74 9.03 19.1
634.17 1.18 6.03 -0.0274 -- -- -- -- 0.396 -- -- -- -- --
205.47 0.671 5.95 -- 2.72 -- -- -- 0.384 9.2 -- -- -- --
198.5 0.656 6.03 -- -- -2.74 -- -- 0.366 -- 15.1 545 10.7 12
634.19 1.18 6.03 -- -- -- -- -- 0.399 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 164.84 temperature 20.0 90 > th dose independent rect. 9 19
3 166.93 temperature 20.0 270 > th dose independent rect. 7 20
4 167.33 temperature 10.0 43200 > th dose independent rect. 10 5
8 169.02 temperature 15.0 4320 > th dose independent rect. 7 3
11 169.90 temperature 20.0 270 > th dose independent rect. 9 1
16 170.68 temperature 20.0 270 > th dose independent rect. 7 6
20 170.94 wind 9.0 43200 < th dose independent rect. 15 21
24 171.04 humidity 50.0 14400 > th dose independent rect. 4 5
25 171.15 wind 9.0 43200 < th dose independent sin 12 NA
27 171.27 wind 9.0 43200 > th dose independent rect. 16 21
30 171.36 wind 9.0 43200 > th dose dependent rect. 14 18
33 171.38 temperature 20.0 270 > th dose independent rect. 8 3
41 171.45 wind 9.0 43200 > th dose independent sin 12 NA
43 171.50 temperature 15.0 270 > th dose independent rect. 22 14
55 171.75 temperature 20.0 10 > th dose independent rect. 9 5
56 171.80 wind 7.0 43200 < th dose independent rect. 21 19
58 171.83 wind 7.0 43200 > th dose dependent rect. 17 21
62 171.88 wind 7.0 43200 > th dose independent rect. 21 19
63 171.90 wind 7.0 43200 > th dose dependent rect. 15 22
84 172.08 wind 7.0 43200 > th dose dependent sin 11 NA
105 172.25 wind 9.0 43200 < th dose independent rect. 17 15
139 172.52 wind 7.0 43200 > th dose independent sin 4 NA
140 172.52 wind 7.0 43200 < th dose independent sin 4 NA
172 172.76 wind 9.0 43200 > th dose dependent rect. 9 22
197 172.87 wind 9.0 43200 > th dose independent rect. 17 15
200 172.88 wind 9.0 43200 < th dose independent rect. 3 23
203 172.89 wind 9.0 43200 < th dose independent no NA NA
215 172.92 wind 5.0 43200 > th dose dependent rect. 1 15
225 172.95 temperature 20.0 270 > th dose independent rect. 18 18
231 172.99 wind 9.0 43200 < th dose independent rect. 6 23
237 173.00 wind 7.0 43200 > th dose dependent sin 4 NA
240 173.01 wind 7.0 43200 > th dose dependent no NA NA
255 173.07 wind 9.0 43200 < th dose independent rect. 22 23
256 173.07 wind 7.0 43200 > th dose dependent rect. 17 15
257 173.07 wind 7.0 43200 > th dose dependent rect. 1 23
271 173.11 wind 7.0 43200 > th dose dependent rect. 7 23
272 173.12 humidity 90.0 90 < th dose independent rect. 9 5
277 173.12 wind 9.0 43200 > th dose dependent rect. 9 17
292 173.15 wind 9.0 43200 > th dose dependent rect. 9 15
298 173.16 humidity 90.0 270 < th dose independent rect. 9 2
312 173.20 wind 7.0 43200 > th dose dependent rect. 18 12
330 173.25 wind 9.0 43200 > th dose independent rect. 12 23
332 173.26 wind 9.0 43200 > th dose independent no NA NA
345 173.28 wind 9.0 43200 > th dose independent rect. 1 23
346 173.28 wind 9.0 43200 < th dose independent rect. 10 23
350 173.29 wind 9.0 43200 > th dose independent rect. 3 23
371 173.34 wind 9.0 43200 > th dose independent rect. 6 23
397 173.41 radiation 1.0 90 < th dose independent sin 12 NA
425 173.45 humidity 50.0 14400 > th dose independent rect. 19 10
429 173.45 wind 9.0 43200 > th dose independent rect. 22 23
439 173.47 temperature 30.0 270 < th dose independent rect. 16 11
473 173.55 humidity 50.0 14400 > th dose independent rect. 7 2
476 173.55 radiation 30.0 270 < th dose dependent rect. 16 11
535 173.66 wind 9.0 43200 > th dose independent rect. 10 23
601 173.75 precipitation 0.1 270 < th dose independent rect. 10 23
604 173.75 precipitation 0.1 270 < th dose dependent rect. 10 23
622 173.79 wind 9.0 43200 > th dose dependent sin 20 NA
694 173.92 humidity 50.0 270 > th dose independent rect. 16 11
748 174.03 wind 9.0 43200 > th dose dependent rect. 9 9
900 174.40 wind 7.0 43200 > th dose independent rect. 20 8