Os04g0614600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Viroid RNA-binding protein (Fragment).
FiT-DB / Search/ Help/ Sample detail
|
Os04g0614600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Viroid RNA-binding protein (Fragment).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.12 | 0.282 | 12.3 | -0.936 | 1.29 | -1.02 | 0.217 | -3.55 | 0.133 | 1.03 | 13.81 | 10399 | -- | -- |
| 39.97 | 0.294 | 12.1 | -0.161 | 1.27 | -0.709 | 0.229 | -- | 0.552 | 1.03 | 25.78 | 16055 | -- | -- |
| 36.31 | 0.281 | 12.3 | -0.925 | 1.29 | -1.02 | -- | -3.51 | 0.134 | 1.01 | 13.37 | 10412 | -- | -- |
| 40.15 | 0.295 | 12.1 | -0.163 | 1.28 | -0.695 | -- | -- | 0.537 | 1.01 | 25.79 | 16065 | -- | -- |
| 93.56 | 0.453 | 12.2 | -0.499 | -- | -1.92 | -- | -2.29 | 0.321 | -- | 13.37 | 10412 | -- | -- |
| 55.46 | 0.349 | 12.2 | -0.582 | 1.26 | -- | 0.169 | -- | 0.124 | 1.01 | -- | -- | -- | -- |
| 55.58 | 0.349 | 12.2 | -0.588 | 1.26 | -- | -- | -- | 0.123 | 1.01 | -- | -- | -- | -- |
| 88.63 | 0.44 | 12.2 | -0.321 | -- | -1.68 | -- | -- | 0.232 | -- | 25.43 | 14646 | -- | -- |
| 40.52 | 0.296 | 12.1 | -- | 1.27 | -0.776 | -- | -- | 0.568 | 1.01 | 23.64 | 16046 | -- | -- |
| 153.74 | 0.579 | 12.2 | -0.541 | -- | -- | -- | -- | 0.147 | -- | -- | -- | -- | -- |
| 64.7 | 0.376 | 12.2 | -- | 1.25 | -- | -- | -- | 0.188 | 0.988 | -- | -- | -- | -- |
| 86.41 | 0.434 | 12.1 | -- | -- | -1.71 | -- | -- | 0.403 | -- | 23.19 | 16117 | -- | -- |
| 161.45 | 0.593 | 12.2 | -- | -- | -- | -- | -- | 0.207 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.06 | temperature | 20 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 2 | 35.16 | temperature | 20 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 6 | 35.36 | temperature | 20 | 14400 | > th | dose independent | rect. | 20 | 9 |
| 8 | 35.39 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 6 |
| 13 | 35.43 | temperature | 20 | 14400 | < th | dose independent | rect. | 20 | 9 |
| 27 | 35.50 | temperature | 20 | 14400 | > th | dose independent | rect. | 14 | 16 |
| 29 | 35.51 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 7 |
| 33 | 35.52 | temperature | 20 | 14400 | > th | dose independent | sin | 12 | NA |
| 77 | 35.63 | temperature | 20 | 14400 | < th | dose independent | sin | 12 | NA |
| 307 | 36.08 | temperature | 20 | 14400 | > th | dose independent | no | NA | NA |
| 331 | 36.13 | temperature | 20 | 14400 | > th | dose independent | rect. | 23 | 23 |
| 340 | 36.14 | temperature | 20 | 14400 | > th | dose independent | rect. | 3 | 23 |
| 370 | 36.20 | temperature | 25 | 14400 | < th | dose dependent | rect. | 12 | 17 |
| 378 | 36.22 | temperature | 20 | 14400 | < th | dose independent | no | NA | NA |
| 400 | 36.25 | temperature | 20 | 14400 | < th | dose independent | rect. | 23 | 23 |
| 426 | 36.30 | temperature | 20 | 14400 | < th | dose independent | rect. | 3 | 23 |
| 427 | 36.30 | temperature | 25 | 14400 | < th | dose dependent | sin | 15 | NA |
| 428 | 36.30 | temperature | 25 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 449 | 36.34 | temperature | 25 | 14400 | < th | dose dependent | rect. | 17 | 10 |
| 468 | 36.36 | temperature | 25 | 14400 | < th | dose dependent | rect. | 18 | 8 |
| 533 | 36.46 | temperature | 25 | 14400 | < th | dose dependent | rect. | 18 | 21 |
| 559 | 36.48 | temperature | 25 | 14400 | < th | dose dependent | no | NA | NA |
| 566 | 36.48 | temperature | 25 | 14400 | < th | dose dependent | rect. | 24 | 23 |
| 605 | 36.51 | temperature | 25 | 14400 | < th | dose dependent | rect. | 3 | 23 |
| 606 | 36.51 | temperature | 25 | 14400 | < th | dose dependent | rect. | 5 | 23 |
| 653 | 36.55 | temperature | 25 | 14400 | < th | dose dependent | rect. | 24 | 16 |
| 725 | 36.63 | temperature | 10 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 786 | 36.71 | temperature | 25 | 14400 | < th | dose dependent | sin | 5 | NA |
| 804 | 36.74 | temperature | 25 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 878 | 36.84 | temperature | 10 | 14400 | > th | dose dependent | rect. | 17 | 12 |
| 997 | 36.97 | temperature | 20 | 14400 | > th | dose independent | rect. | 4 | 1 |