Os08g0205900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Viroid RNA-binding protein (Fragment).
FiT-DB / Search/ Help/ Sample detail
|
Os08g0205900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Viroid RNA-binding protein (Fragment).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 101.95 | 0.474 | 11 | -0.98 | 1.26 | 1.73 | 2.99 | -4.94 | -0.345 | 9.1 | 21.27 | 1432 | -- | -- |
| 108.27 | 0.485 | 10.9 | -0.126 | 1.32 | 2.25 | 3.16 | -- | -0.216 | 9.01 | 12.35 | 7779 | -- | -- |
| 130.48 | 0.532 | 11 | -1.3 | 1.46 | 1.94 | -- | -6.78 | -0.441 | 8.82 | 21.62 | 2040 | -- | -- |
| 141.95 | 0.555 | 10.9 | 0.0351 | 1.29 | 2.22 | -- | -- | -0.193 | 8.96 | 10.28 | 7797 | -- | -- |
| 233.63 | 0.712 | 11 | -0.889 | -- | 1.57 | -- | -4.62 | -0.319 | -- | 21.5 | 2889 | -- | -- |
| 189.33 | 0.645 | 10.7 | 1.06 | 1.23 | -- | 3.1 | -- | 0.417 | 8.89 | -- | -- | -- | -- |
| 221.89 | 0.698 | 10.7 | 1.17 | 1.23 | -- | -- | -- | 0.418 | 8.81 | -- | -- | -- | -- |
| 230.66 | 0.707 | 10.9 | 0.0834 | -- | 2.11 | -- | -- | -0.133 | -- | 10.61 | 7278 | -- | -- |
| 141.97 | 0.555 | 10.9 | -- | 1.29 | 2.24 | -- | -- | -0.203 | 8.96 | 10.3 | 7800 | -- | -- |
| 307.67 | 0.82 | 10.8 | 1.17 | -- | -- | -- | -- | 0.427 | -- | -- | -- | -- | -- |
| 257.68 | 0.751 | 10.8 | -- | 1.23 | -- | -- | -- | 0.288 | 8.74 | -- | -- | -- | -- |
| 230.75 | 0.707 | 10.9 | -- | -- | 2.18 | -- | -- | -0.162 | -- | 10.01 | 7280 | -- | -- |
| 343.55 | 0.865 | 10.8 | -- | -- | -- | -- | -- | 0.298 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 97.30 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 10 |
| 4 | 97.38 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 5 | 97.38 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 11 | 97.54 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 22 | 98.33 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 29 | 98.62 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 10 |
| 32 | 99.48 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 35 | 99.74 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 39 | 100.05 | wind | 5 | 43200 | > th | dose dependent | sin | 21 | NA |
| 40 | 100.07 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 12 |
| 41 | 100.12 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 15 |
| 42 | 100.13 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 8 |
| 58 | 100.33 | wind | 7 | 43200 | < th | dose independent | rect. | 23 | 18 |
| 61 | 100.34 | wind | 7 | 43200 | > th | dose independent | rect. | 23 | 18 |
| 62 | 100.36 | temperature | 20 | 1440 | > th | dose dependent | rect. | 12 | 10 |
| 76 | 100.49 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 6 |
| 83 | 100.57 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 12 |
| 88 | 100.60 | wind | 7 | 43200 | < th | dose independent | rect. | 2 | 15 |
| 91 | 100.61 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 16 |
| 112 | 100.70 | wind | 7 | 43200 | > th | dose independent | rect. | 23 | 22 |
| 116 | 100.72 | wind | 7 | 43200 | > th | dose independent | rect. | 2 | 15 |
| 118 | 100.72 | wind | 7 | 43200 | < th | dose independent | rect. | 23 | 22 |
| 130 | 100.79 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 134 | 100.80 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 139 | 100.82 | wind | 7 | 43200 | < th | dose independent | rect. | 2 | 19 |
| 144 | 100.84 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 16 |
| 149 | 100.87 | wind | 7 | 43200 | > th | dose independent | rect. | 2 | 19 |
| 171 | 100.96 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 20 |
| 180 | 100.99 | radiation | 1 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 208 | 101.06 | temperature | 20 | 1440 | > th | dose dependent | sin | 19 | NA |
| 216 | 101.08 | wind | 7 | 43200 | < th | dose independent | sin | 1 | NA |
| 221 | 101.09 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 13 |
| 225 | 101.10 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 20 |
| 236 | 101.13 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 241 | 101.14 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 21 |
| 272 | 101.26 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 16 |
| 277 | 101.28 | wind | 7 | 43200 | > th | dose independent | sin | 1 | NA |
| 303 | 101.35 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 21 |
| 314 | 101.38 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 22 |
| 327 | 101.42 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 7 |
| 342 | 101.46 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 22 |
| 387 | 101.61 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 16 |
| 443 | 101.75 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 449 | 101.78 | wind | 5 | 43200 | < th | dose independent | rect. | 10 | 5 |
| 471 | 101.85 | wind | 7 | 43200 | > th | dose independent | no | NA | NA |
| 483 | 101.88 | wind | 7 | 43200 | < th | dose independent | no | NA | NA |
| 490 | 101.89 | wind | 3 | 43200 | > th | dose dependent | rect. | 11 | 3 |
| 516 | 101.96 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 13 |
| 572 | 102.12 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 23 |
| 579 | 102.14 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 20 |
| 602 | 102.20 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 23 |
| 631 | 102.30 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 669 | 102.45 | wind | 7 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 743 | 102.67 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 21 |
| 745 | 102.68 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 751 | 102.69 | wind | 1 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 770 | 102.74 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 18 |