Os03g0338000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Alanine:glyoxylate aminotransferase-like protein (Fragment).
FiT-DB / Search/ Help/ Sample detail
|
Os03g0338000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Alanine:glyoxylate aminotransferase-like protein (Fragment).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 887.28 | 1.4 | 5.94 | -2.25 | 1.97 | 4.03 | 0.402 | -3.01 | -2.82 | 8.59 | 24.65 | 1371 | -- | -- |
| 891.78 | 1.39 | 5.84 | -1.48 | 2.04 | 3.81 | 0.356 | -- | -2.66 | 8.68 | 24.47 | 1359 | -- | -- |
| 887.78 | 1.39 | 5.94 | -2.25 | 1.97 | 4.03 | -- | -3.05 | -2.83 | 8.56 | 24.62 | 1368 | -- | -- |
| 891.52 | 1.39 | 5.85 | -1.42 | 1.97 | 3.73 | -- | -- | -2.64 | 8.47 | 24.6 | 1392 | -- | -- |
| 1102.29 | 1.55 | 6.01 | -2.23 | -- | 3.97 | -- | -2.79 | -2.87 | -- | 24.29 | 1411 | -- | -- |
| 1432.63 | 1.77 | 5.72 | -0.127 | 1.99 | -- | 0.149 | -- | -2.08 | 7.65 | -- | -- | -- | -- |
| 1432.69 | 1.77 | 5.72 | -0.123 | 1.99 | -- | -- | -- | -2.08 | 7.65 | -- | -- | -- | -- |
| 1103.43 | 1.55 | 5.91 | -1.4 | -- | 3.7 | -- | -- | -2.69 | -- | 23.99 | 1420 | -- | -- |
| 939.09 | 1.43 | 5.79 | -- | 1.97 | 3.38 | -- | -- | -2.37 | 8.47 | 24.88 | 1391 | -- | -- |
| 1646.16 | 1.9 | 5.77 | -0.096 | -- | -- | -- | -- | -2.05 | -- | -- | -- | -- | -- |
| 1433.09 | 1.77 | 5.72 | -- | 1.99 | -- | -- | -- | -2.07 | 7.65 | -- | -- | -- | -- |
| 1151.72 | 1.58 | 5.85 | -- | -- | 3.36 | -- | -- | -2.4 | -- | 24.6 | 1412 | -- | -- |
| 1646.41 | 1.89 | 5.77 | -- | -- | -- | -- | -- | -2.04 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 859.74 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 2 | 864.72 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 3 | 867.38 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 11 |
| 4 | 868.85 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 11 |
| 6 | 875.77 | wind | 7 | 43200 | > th | dose dependent | rect. | 19 | 3 |
| 7 | 876.69 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 11 |
| 8 | 877.75 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 4 |
| 11 | 878.63 | wind | 5 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 14 | 882.43 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 4 |
| 15 | 883.58 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 20 |
| 41 | 887.71 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 16 |
| 47 | 888.26 | temperature | 25 | 1440 | > th | dose dependent | sin | 4 | NA |
| 67 | 889.38 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 22 |
| 69 | 889.39 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 22 |
| 89 | 889.98 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 93 | 890.07 | temperature | 25 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 107 | 890.27 | temperature | 25 | 1440 | > th | dose dependent | rect. | 8 | 6 |
| 184 | 891.68 | wind | 7 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 253 | 894.61 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 21 |
| 263 | 896.17 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 6 |
| 264 | 896.26 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 13 |
| 270 | 896.60 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 21 |
| 271 | 896.60 | humidity | 60 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 279 | 897.34 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 6 |
| 306 | 898.99 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 313 | 899.52 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 13 |
| 343 | 902.94 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 351 | 903.52 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 368 | 904.52 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 369 | 904.63 | wind | 5 | 43200 | > th | dose dependent | rect. | 19 | 20 |
| 375 | 905.12 | wind | 5 | 43200 | > th | dose dependent | rect. | 17 | 21 |
| 388 | 905.71 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 5 |
| 398 | 906.46 | wind | 9 | 43200 | > th | dose dependent | rect. | 14 | 16 |
| 399 | 906.47 | temperature | 25 | 14400 | < th | dose independent | rect. | 19 | 4 |
| 414 | 907.41 | temperature | 25 | 14400 | > th | dose independent | rect. | 19 | 4 |
| 424 | 908.09 | humidity | 50 | 14400 | < th | dose independent | rect. | 16 | 18 |
| 429 | 908.34 | temperature | 25 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 434 | 908.44 | wind | 9 | 43200 | > th | dose dependent | rect. | 14 | 13 |
| 448 | 909.45 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 450 | 909.71 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 6 |
| 453 | 910.08 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 459 | 910.30 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 463 | 910.43 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 6 |
| 475 | 911.03 | wind | 7 | 43200 | > th | dose dependent | rect. | 17 | 8 |
| 485 | 911.37 | temperature | 25 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 488 | 911.49 | temperature | 25 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 513 | 912.53 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 8 |
| 533 | 913.16 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 562 | 913.98 | humidity | 50 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 581 | 914.07 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 612 | 914.87 | temperature | 10 | 1440 | > th | dose dependent | rect. | 8 | 13 |
| 644 | 915.50 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 663 | 915.89 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 8 |
| 676 | 916.10 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 6 |
| 679 | 916.14 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 680 | 916.15 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 13 |
| 713 | 916.70 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 11 |
| 951 | 922.09 | temperature | 10 | 1440 | > th | dose dependent | sin | 21 | NA |
| 979 | 922.75 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 2 |