Os05g0129100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Aminotransferase class-III family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os05g0129100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Aminotransferase class-III family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.73 | 0.238 | 13.1 | -0.139 | 0.709 | -1.48 | -1.77 | -0.633 | -0.101 | 13.5 | 1.51 | 679 | -- | -- |
| 26.08 | 0.238 | 13.1 | -0.15 | 0.699 | -1.58 | -1.64 | -- | -0.126 | 12.9 | 1.576 | 678 | -- | -- |
| 31.92 | 0.265 | 13.1 | -0.146 | 1.67 | -0.109 | -- | 1.11 | -0.0554 | 16.3 | 1.514 | 676 | -- | -- |
| 35.92 | 0.279 | 13.1 | -0.189 | 1.67 | -0.324 | -- | -- | -0.116 | 15.9 | 26.99 | 1742 | -- | -- |
| 49.44 | 0.327 | 13.1 | -0.332 | -- | -1.53 | -- | 3.04 | 0.111 | -- | 1.53 | 500 | -- | -- |
| 36.16 | 0.282 | 13.1 | -0.123 | 1.72 | -- | -1.16 | -- | -0.0407 | 15.9 | -- | -- | -- | -- |
| 39.96 | 0.296 | 13.1 | -0.14 | 1.72 | -- | -- | -- | -0.0471 | 16 | -- | -- | -- | -- |
| 37.75 | 0.286 | 13.1 | -0.252 | -- | -1.71 | -- | -- | -0.11 | -- | 1.52 | 518 | -- | -- |
| 36.1 | 0.28 | 13.1 | -- | 1.66 | -0.379 | -- | -- | -0.101 | 16 | 35.75 | 1746 | -- | -- |
| 200.94 | 0.662 | 13.1 | -0.21 | -- | -- | -- | -- | -0.0929 | -- | -- | -- | -- | -- |
| 40.47 | 0.298 | 13.1 | -- | 1.72 | -- | -- | -- | -0.0316 | 16 | -- | -- | -- | -- |
| 38.7 | 0.29 | 13.1 | -- | -- | -1.74 | -- | -- | -0.104 | -- | 1.518 | 523 | -- | -- |
| 202.1 | 0.664 | 13.1 | -- | -- | -- | -- | -- | -0.0697 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.94 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 14 |
| 2 | 22.96 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 19 |
| 8 | 23.14 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 9 |
| 14 | 23.26 | temperature | 10 | 720 | > th | dose dependent | sin | 1 | NA |
| 59 | 23.67 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 21 |
| 78 | 23.76 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 19 |
| 90 | 23.91 | temperature | 15 | 270 | > th | dose dependent | rect. | 9 | 15 |
| 96 | 23.95 | temperature | 10 | 270 | > th | dose dependent | rect. | 11 | 14 |
| 127 | 24.17 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 4 |
| 130 | 24.19 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 12 |
| 135 | 24.21 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 13 |
| 138 | 24.22 | temperature | 30 | 720 | < th | dose independent | rect. | 1 | 10 |
| 142 | 24.23 | temperature | 30 | 720 | < th | dose independent | rect. | 19 | 17 |
| 178 | 24.40 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 16 |
| 187 | 24.43 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 7 |
| 228 | 24.57 | temperature | 30 | 720 | < th | dose independent | sin | 5 | NA |
| 236 | 24.59 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 15 |
| 253 | 24.64 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |
| 269 | 24.66 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 18 |
| 274 | 24.67 | temperature | 30 | 270 | < th | dose dependent | sin | 3 | NA |
| 389 | 24.94 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 17 |
| 415 | 24.98 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 6 |
| 420 | 24.98 | radiation | 10 | 720 | < th | dose dependent | rect. | 15 | 16 |
| 424 | 24.99 | temperature | 30 | 720 | < th | dose independent | rect. | 5 | 8 |
| 425 | 24.99 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 8 |
| 434 | 25.01 | temperature | 30 | 270 | < th | dose independent | sin | 2 | NA |
| 523 | 25.13 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 18 |
| 528 | 25.14 | humidity | 70 | 270 | > th | dose independent | rect. | 15 | 15 |
| 580 | 25.21 | temperature | 10 | 10 | > th | dose dependent | sin | 18 | NA |
| 680 | 25.33 | temperature | 30 | 270 | < th | dose independent | rect. | 16 | 14 |
| 704 | 25.36 | radiation | 10 | 720 | < th | dose dependent | sin | 13 | NA |
| 750 | 25.43 | temperature | 30 | 720 | < th | dose independent | sin | 22 | NA |
| 796 | 25.48 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 22 |
| 815 | 25.50 | radiation | 30 | 720 | < th | dose dependent | sin | 12 | NA |
| 868 | 25.56 | temperature | 30 | 10 | < th | dose independent | sin | 23 | NA |
| 907 | 25.61 | radiation | 1 | 720 | < th | dose independent | rect. | 23 | 22 |
| 920 | 25.62 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 5 |