BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0524400 Os04g0524400|AK103349
(399 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0524400 Conserved hypothetical protein 634 0.0
Os07g0240300 Conserved hypothetical protein 432 e-121
AK110446 245 5e-65
Os03g0390900 Conserved hypothetical protein 151 1e-36
Os01g0957200 Conserved hypothetical protein 134 1e-31
Os05g0388600 Conserved hypothetical protein 130 1e-30
Os01g0826900 Protein of unknown function DUF399 family protein 115 4e-26
Os01g0812900 Conserved hypothetical protein 103 2e-22
Os12g0283800 Conserved hypothetical protein 69 7e-12
>Os04g0524400 Conserved hypothetical protein
Length = 399
Score = 634 bits (1635), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/355 (89%), Positives = 319/355 (89%)
Query: 45 PRLFSPLPPKPHSLSCSGTQAPRATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 104
PRLFSPLPPKPHSLSCSGTQAPRATT
Sbjct: 45 PRLFSPLPPKPHSLSCSGTQAPRATTGDGSGAAGDRGSGSGGNSGKGGGGGSGSGGGDDD 104
Query: 105 XXYEEAEFGPLLGFDEVLRLAAARGVSLPADMMEAAKDAGIREVLLLRYFDLQAGPWPLA 164
YEEAEFGPLLGFDEVLRLAAARGVSLPADMMEAAKDAGIREVLLLRYFDLQAGPWPLA
Sbjct: 105 DDYEEAEFGPLLGFDEVLRLAAARGVSLPADMMEAAKDAGIREVLLLRYFDLQAGPWPLA 164
Query: 165 AMIRAFSMLRNRMLADPSFLFKVGTEVVIDSCCATFAEVQKRGEDFWAEFELYAADLLVG 224
AMIRAFSMLRNRMLADPSFLFKVGTEVVIDSCCATFAEVQKRGEDFWAEFELYAADLLVG
Sbjct: 165 AMIRAFSMLRNRMLADPSFLFKVGTEVVIDSCCATFAEVQKRGEDFWAEFELYAADLLVG 224
Query: 225 VVVDIALVGLLAPYVRFGKASASTGPFGRFNRMAGSLPSSVFEAERPGCRFTVQQRIGTF 284
VVVDIALVGLLAPYVRFGKASASTGPFGRFNRMAGSLPSSVFEAERPGCRFTVQQRIGTF
Sbjct: 225 VVVDIALVGLLAPYVRFGKASASTGPFGRFNRMAGSLPSSVFEAERPGCRFTVQQRIGTF 284
Query: 285 FYKGVLYGSVGFVCGIIGQGIANMIMTAKRSVKKSDEDIPVPPLIKSAALWGVFLAVSSN 344
FYKGVLYGSVGFVCGIIGQGIANMIMTAKRSVKKSDEDIPVPPLIKSAALWGVFLAVSSN
Sbjct: 285 FYKGVLYGSVGFVCGIIGQGIANMIMTAKRSVKKSDEDIPVPPLIKSAALWGVFLAVSSN 344
Query: 345 TRYQIINGLERVVETSPIAKRVPPVAMAFTVGVRFANNIYGGMQFVDWARWSGVQ 399
TRYQIINGLERVVETSPIAKRVPPVAMAFTVGVRFANNIYGGMQFVDWARWSGVQ
Sbjct: 345 TRYQIINGLERVVETSPIAKRVPPVAMAFTVGVRFANNIYGGMQFVDWARWSGVQ 399
>Os07g0240300 Conserved hypothetical protein
Length = 443
Score = 432 bits (1111), Expect = e-121, Method: Compositional matrix adjust.
Identities = 215/292 (73%), Positives = 253/292 (86%), Gaps = 3/292 (1%)
Query: 111 EFGPLLGFDEVLRLAAARGVSLP---ADMMEAAKDAGIREVLLLRYFDLQAGPWPLAAMI 167
EFGP+L FD+V++ RGVSLP ADM+EAAK GI+++LLLRY D+QA WPL I
Sbjct: 152 EFGPILSFDQVVQEVEKRGVSLPSLPADMIEAAKSVGIQKLLLLRYLDMQASAWPLGPAI 211
Query: 168 RAFSMLRNRMLADPSFLFKVGTEVVIDSCCATFAEVQKRGEDFWAEFELYAADLLVGVVV 227
R+ S+LRNRML DPSFLFK+GTE+VID+CCATFAEVQKRGE+FW+EFELYAAD+LVGVVV
Sbjct: 212 RSCSLLRNRMLVDPSFLFKIGTEIVIDTCCATFAEVQKRGEEFWSEFELYAADMLVGVVV 271
Query: 228 DIALVGLLAPYVRFGKASASTGPFGRFNRMAGSLPSSVFEAERPGCRFTVQQRIGTFFYK 287
++ALVG+LAPY RFG SAS G GR SLPSSVFEAERPG F++QQRIGT+F+K
Sbjct: 272 NVALVGMLAPYARFGGGSASPGLLGRVRHAYDSLPSSVFEAERPGYSFSIQQRIGTYFFK 331
Query: 288 GVLYGSVGFVCGIIGQGIANMIMTAKRSVKKSDEDIPVPPLIKSAALWGVFLAVSSNTRY 347
G+LYG+VGF CG++GQGIAN+IMTAKRSVKKSD+D+PVPPL+K++ALWG FL VSSNTRY
Sbjct: 332 GILYGTVGFFCGLVGQGIANLIMTAKRSVKKSDDDVPVPPLLKTSALWGAFLGVSSNTRY 391
Query: 348 QIINGLERVVETSPIAKRVPPVAMAFTVGVRFANNIYGGMQFVDWARWSGVQ 399
QIINGLERVVE SP+AKRVP V++AFTVGVRFANNIYGGMQFVDWAR +G Q
Sbjct: 392 QIINGLERVVEASPVAKRVPAVSLAFTVGVRFANNIYGGMQFVDWARMTGCQ 443
>AK110446
Length = 413
Score = 245 bits (625), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 128/272 (47%), Positives = 173/272 (63%), Gaps = 5/272 (1%)
Query: 130 VSLPADMMEAAKDAGIREVLLLRYFDLQAGPWPLAAMIRAFSMLRNRMLADPSFLFKVGT 189
V LPADM+E AK GIR L +Y LQ+ + +++ F +R+RM+AD FL KV
Sbjct: 145 VRLPADMLETAKSYGIRSTALAKYISLQSLVFT-GGLVQRFPWIRDRMIADEKFLLKVVA 203
Query: 190 EVVIDSCCATFAEVQKRGEDFWAEFELYAADLLVGVVVDIALVGLLAPYVRFGKASASTG 249
EV+IDS CAT AEV+KRG++FW EFE Y +DLLVG V+D+ LV L+AP G +A G
Sbjct: 204 EVLIDSGCATVAEVRKRGDEFWQEFEFYLSDLLVGCVLDVVLVSLMAPRAVLGGKAALLG 263
Query: 250 PFGRFNRMAGSLPSSVFEAERPGCR-FTVQQRIGTFFYKGVLYGSVGFVCGIIGQGIANM 308
+ G +PS+ EA G + +T+ R K + Y G CG IGQGIAN
Sbjct: 264 Q-SALQKCLGGIPSAALEASVKGVKQYTLGSRFACLGVKFLEYSLAGITCGFIGQGIANS 322
Query: 309 IMTAKRSVK-KSDEDIPVPPLIKSAALWGVFLAVSSNTRYQIINGLERVVETSPIAKRVP 367
+M KR + + ++D+ VPPL ++A +WG+F+ VSSN RYQ + GLER V+ + IAKRVP
Sbjct: 323 LMMLKRQIHGEKEDDVAVPPLFRTALVWGLFMGVSSNLRYQAVFGLERAVDLT-IAKRVP 381
Query: 368 PVAMAFTVGVRFANNIYGGMQFVDWARWSGVQ 399
+A TV +RF NN+ GG F+D ARW+GVQ
Sbjct: 382 AIAYGTTVAIRFINNVIGGENFIDMARWAGVQ 413
>Os03g0390900 Conserved hypothetical protein
Length = 87
Score = 151 bits (381), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 80/91 (87%), Positives = 80/91 (87%), Gaps = 7/91 (7%)
Query: 127 ARGVSLPADMMEAAKDAGIREVLLLRYFDLQAGPWPLAAMIRAFSMLRNRMLADPSFLFK 186
ARGVSLPADM EAAKDAGI EVLLLRYFDLQA PWPLAAMIRAFSML NRMLADPSFLFK
Sbjct: 2 ARGVSLPADM-EAAKDAGIWEVLLLRYFDLQAAPWPLAAMIRAFSMLHNRMLADPSFLFK 60
Query: 187 VGTEVVIDSCCATFAEVQKRGEDFWAEFELY 217
VGTEVVIDS CATFA EDFWAEFELY
Sbjct: 61 VGTEVVIDSRCATFA------EDFWAEFELY 85
>Os01g0957200 Conserved hypothetical protein
Length = 389
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/275 (30%), Positives = 144/275 (52%), Gaps = 15/275 (5%)
Query: 131 SLPADMMEAAKDAGIREVLLLRYFDLQAGPWPLAAMIR---AFSMLRNRMLADPSFLFKV 187
SLP+D+ A + + ++ R+ +++ +A++R F R R+LAD FL K+
Sbjct: 118 SLPSDLAAAVEGGRVTGEIVRRFAEMEG-----SALLRWLLQFQGFRERLLADDLFLAKL 172
Query: 188 GTEVVIDSCCATFAEVQKRGEDFWAEFELYAADLLVGVVVDIALVGLLAPYVRFGKASAS 247
E + T AE +KR E+F E ++ AD+++ +V D LV L AP V A+
Sbjct: 173 AMECGVGVIAKTAAEYEKRRENFVKEIDIVIADVVMAIVADFMLVYLPAPTVSLQPPLAT 232
Query: 248 TGPFGRFNRMAGSLPSSVFEAERPGCRFTVQQRIGTFFYKGVLYGSVGFVCGIIGQGIAN 307
G + P + F+ G +++ QR+G G +VG +IG G+ N
Sbjct: 233 NA--GHIANFFHNCPDNAFQIALAGRSYSILQRLGAILRNGAKLFTVGTSASLIGTGVTN 290
Query: 308 MIMTAKRSVKKS-DEDIPVPPLIKSAALWGVFLAVSSNTRYQIINGL--ERVVETSPIAK 364
++ A+++V K D+++ P++ ++ +GV++AVSSN RYQI+ G+ +R++E P+
Sbjct: 291 ALIKARKAVDKELDDEVEDIPVLSTSVAYGVYMAVSSNLRYQILAGVIEQRMLE--PLLH 348
Query: 365 RVPPVAMAFTVGVRFANNIYGGMQFVDWARWSGVQ 399
+ A VR N G + +VD+ARW GVQ
Sbjct: 349 NHKLLLSALCFAVRTGNTFLGSLLWVDYARWVGVQ 383
>Os05g0388600 Conserved hypothetical protein
Length = 378
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/273 (30%), Positives = 134/273 (49%), Gaps = 11/273 (4%)
Query: 131 SLPADMMEAAKDAGIREVLLLRYFDLQAGPWPLAAMIRAFSMLRNRMLADPSFLFKVGTE 190
SLPAD+ A + + ++ R+ DL+ L + F + R+LAD FL KV E
Sbjct: 113 SLPADLAAAIEGGRVPGEIVQRFADLEKSG--LFRWLLQFGGFKERLLADDLFLAKVAME 170
Query: 191 VVIDSCCATFAEVQKRGEDFWAEFELYAADLLVGVVVDIALVGLLAPYVRFGKASASTGP 250
+ T AE ++R E+F E + AD+++ +V D LV L AP V A
Sbjct: 171 CGVGIFTKTAAEYERRRENFVKELDFVIADVVMAIVADFMLVWLPAPTVSLQPPLAVNA- 229
Query: 251 FGRFNRMAGSLPSSVFEAERPGCRFTVQQRIGTFFYKGVLYGSVGFVCGIIGQGIANMIM 310
G + + P + F+ G +++ QR+G G +VG +IG G+ N ++
Sbjct: 230 -GSIAKFFHNCPDNAFQVALAGTSYSLLQRVGAIMRNGAKLFAVGTSASLIGTGVTNALI 288
Query: 311 TAKRSVKKS----DEDIPVPPLIKSAALWGVFLAVSSNTRYQIINGLERVVETSPIAKRV 366
A+++V K EDIP+ + ++ +GV++AVSSN RYQI+ G+ P+
Sbjct: 289 KARKAVSKDFEGESEDIPI---VSTSVAYGVYMAVSSNLRYQILAGVIEQRMLEPLLHHH 345
Query: 367 PPVAMAFTVGVRFANNIYGGMQFVDWARWSGVQ 399
V A VR N G + +VD+A+W G+Q
Sbjct: 346 KLVLSALCFAVRTGNTFLGSLLWVDYAKWIGIQ 378
>Os01g0826900 Protein of unknown function DUF399 family protein
Length = 723
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 85/287 (29%), Positives = 131/287 (45%), Gaps = 10/287 (3%)
Query: 121 VLRLAAARGVSLPADMMEAAKDAGIREVLLLRYFDLQAGPWPLAAMIRAFSMLRNRMLAD 180
V+ A R +LP D+ + + +L +FDL+ P +A +I F R R+LAD
Sbjct: 399 VMNAAGRRREALPQDLQKGIDLGVVSPEILQNFFDLEKYPV-MAELIHRFQGFRERLLAD 457
Query: 181 PSFLFKVGTEVVIDSCCATFAEVQKRGEDFWAEFELYAADLLVGVVVDIALVGLLAPYVR 240
P FL ++ E I A+ +KR F E + D + G VVD V L AP +
Sbjct: 458 PKFLHRLAIEEGISITTTLIAQYEKRKGRFLEEIDYVLTDTIRGSVVDFFTVWLPAPTIS 517
Query: 241 FGK--ASASTGPFGRFNRMAGSLPSSVFEAERPGCRFTVQQRIGTFFYKGVLYGSVGFVC 298
+ S + GSLP + F+ G + QR + G+ VGF+
Sbjct: 518 LLSLGDNGSGESLELLKGLLGSLPDNAFQKGIMGQSWNTNQRFASVLMGGIKLAGVGFIS 577
Query: 299 GIIGQGIANMIMTAKRSVKKSDEDIPV----PPLIKSAALWGVFLAVSSNTRYQIINGL- 353
IG G+A+ ++ A R V + + P+ KSA ++ FL S+N RYQ+I GL
Sbjct: 578 S-IGAGVASDVLYAARRVLRPSTSVETARRRTPIWKSATVYSCFLGTSANLRYQVIAGLV 636
Query: 354 -ERVVETSPIAKRVPPVAMAFTVGVRFANNIYGGMQFVDWARWSGVQ 399
R+ E P +A + R N+ +G Q++D AR +G+Q
Sbjct: 637 EHRLGEYLMAYYNQPLLANLLSFVSRTINSYWGTQQWIDLARATGLQ 683
>Os01g0812900 Conserved hypothetical protein
Length = 348
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 113/226 (50%), Gaps = 20/226 (8%)
Query: 176 RMLADPSFLFKVGTEVVIDSCCATFAEVQKRGEDFWAEFELYAADLLVGVVVDIALVGLL 235
R+ ADP F FKV E ++ ++ R E + + L+VG +++ L+ LL
Sbjct: 102 RVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFVLMYLL 161
Query: 236 APYVRFGKASASTGPFGRFNRMAGSLPSSVFEAERPGCRFTVQQRIGTFFYKGVLYGSVG 295
AP A+++ A LPS +FEA +++ R+ T KG + +VG
Sbjct: 162 APTAGASAAASAA---------ASGLPSHMFEA----GAYSLGSRVATLLSKGATFAAVG 208
Query: 296 FVCGIIGQGIANMIMTAKRSVKKSDED-IPVPPLIKSAALWGVFLAVSSNTRYQIINGLE 354
F G+ G I+N +++ ++ + + E PP + +AA W + + VSSN RYQ +NG+E
Sbjct: 209 FAAGLAGTAISNGLISLRKRMDPAFETPNKAPPTLLNAATWAIHMGVSSNLRYQTLNGVE 268
Query: 355 RVVETSPIAKRVPPVAMAFT-VGVRFANNIYGGMQFVDWARWSGVQ 399
+ +A PP + V +R NN+ GGM FV AR +G Q
Sbjct: 269 YL-----LANAAPPSVFKVSVVALRCINNVLGGMSFVLLARLTGSQ 309
>Os12g0283800 Conserved hypothetical protein
Length = 236
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 85/164 (51%), Gaps = 16/164 (9%)
Query: 220 DLLVGVVVDIALVGLLAPYVRFGKASASTGPFGRFNRMAGSLPSSVFEAERPGCRFTVQQ 279
+ L ++ ++GLLAP +G ST F F LP+++FE P +F +Q+
Sbjct: 3 NALTASCCNVMVLGLLAPCRSYG----STSRFD-FQNAIEKLPNNIFEKSYPLRQFDLQK 57
Query: 280 RIGTFFYKGVLYGSVGFVCGIIGQGIANMIMTAKRSVKKSDEDIPVPPLIKSAALWGVFL 339
RI FFYK +G V G I QG + ++A++ + S + +P + +A +G FL
Sbjct: 58 RISAFFYKAAELSLLGVVAGSI-QGGLSKALSARKERRLS---VTIPSVSTNALGYGAFL 113
Query: 340 AVSSNTRYQIINGLERVVETSPIAKR--VPPVAMAFTVGVRFAN 381
+ +N RYQ++ GL++ + +R V VA+ F+ +R N
Sbjct: 114 GLYANLRYQLLCGLDQY-----MVRRFDVLGVAIFFSTALRLTN 152
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.139 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,863,809
Number of extensions: 402482
Number of successful extensions: 1453
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 1433
Number of HSP's successfully gapped: 9
Length of query: 399
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 296
Effective length of database: 11,657,759
Effective search space: 3450696664
Effective search space used: 3450696664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 157 (65.1 bits)