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Os01g0826900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF399 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.9 (0.0241) R2 : 0.939
β1 : -0.914 (0.0884) R2dD : 0.0149 R2D : 0.0142
β2 : 4.49 (0.0613) R2dC : 0.738 R2C : 0.809
β3 : -2 (0.0767) R2dE : 0.0951 R2E : 0.186
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.42 (0.0517) R2dN8 : 0.014 R2N8 : 0.00581
σ : 0.45
deviance : 93.46
__
_____
C
peak time of C : 8.5
E
wheather : radiation
threshold : 0.05
memory length : 297
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 6.72
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
89.52 0.445 11.9 -1.01 4.92 -1.76 1.56 -0.207 -0.485 8.5 0.0415 279 6.12 --
87.17 0.435 11.9 -0.939 4.61 -1.91 1.41 -- -0.429 8.51 0.04993 295 6.58 --
93.61 0.451 11.9 -0.904 4.51 -2.05 -- 0.126 -0.414 8.51 0.04009 299 6.67 --
93.46 0.45 11.9 -0.914 4.49 -2 -- -- -0.42 8.5 0.05 297 6.72 --
175.86 0.618 12.3 -0.339 -- -5 -- -0.678 -0.635 -- 0.02994 534 9.63 --
197.92 0.66 12 -1.19 4.83 -- 1.95 -- -0.632 8 -- -- -- --
209.27 0.677 12 -1.14 4.83 -- -- -- -0.634 8 -- -- -- --
158.54 0.586 12.3 -0.688 -- -5.46 -- -- -0.635 -- 8.127e-08 529 10.1 --
115.96 0.502 11.9 -- 4.44 -2.1 -- -- -0.408 8.51 0.04252 297 6.78 --
1484.14 1.8 12.1 -1.09 -- -- -- -- -0.572 -- -- -- -- --
243.25 0.73 11.9 -- 4.82 -- -- -- -0.507 8.02 -- -- -- --
171.98 0.611 12.3 -- -- -5.39 -- -- -0.558 -- 2.804e-08 529 10.2 --
1515.35 1.82 12.1 -- -- -- -- -- -0.451 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 91.64 wind 7.0 270 < th dose independent rect. 19 9
2 91.67 radiation 40.0 270 < th dose independent rect. 15 17
3 92.55 temperature 10.0 270 > th dose independent rect. 8 7
4 92.55 atmosphere 1015.0 270 < th dose independent rect. 8 7
5 92.55 temperature 10.0 270 > th dose independent rect. 15 17
8 93.00 precipitation 0.1 270 < th dose independent rect. 8 7
9 93.00 precipitation 0.1 270 < th dose dependent rect. 8 7
10 93.14 temperature 10.0 270 > th dose independent rect. 19 9
11 93.14 temperature 30.0 270 < th dose independent rect. 19 9
12 93.14 humidity 50.0 270 > th dose independent rect. 19 9
13 93.14 atmosphere 995.0 270 > th dose independent rect. 19 9
14 93.14 radiation 1.0 270 < th dose independent rect. 19 9
19 93.14 temperature 10.0 270 > th dose independent rect. 4 15
20 93.14 atmosphere 1015.0 270 < th dose independent rect. 4 15
21 93.14 radiation 10.0 270 < th dose dependent rect. 19 9
27 93.53 wind 9.0 270 < th dose independent rect. 8 7
29 94.05 wind 9.0 270 < th dose independent rect. 15 17
35 94.54 temperature 20.0 270 > th dose independent rect. 14 7
36 94.58 radiation 1.0 270 > th dose independent rect. 8 7
39 94.85 wind 9.0 270 < th dose independent rect. 4 15
41 95.33 atmosphere 995.0 270 > th dose independent rect. 8 7
44 95.59 precipitation 0.1 270 < th dose independent rect. 15 17
45 95.59 precipitation 0.1 270 < th dose dependent rect. 15 17
46 95.80 precipitation 0.1 270 < th dose independent rect. 4 15
47 95.80 precipitation 0.1 270 < th dose dependent rect. 4 15
52 97.16 temperature 10.0 270 > th dose dependent rect. 14 8
53 97.18 temperature 10.0 270 > th dose dependent rect. 15 6
54 97.22 wind 1.0 270 > th dose independent rect. 8 7
55 97.41 precipitation 0.1 270 < th dose independent rect. 19 9
56 97.41 precipitation 0.1 270 < th dose dependent rect. 19 9
58 97.62 atmosphere 995.0 270 > th dose independent rect. 15 17
62 98.54 temperature 10.0 270 > th dose dependent rect. 15 17
63 98.58 radiation 1.0 270 < th dose dependent sin 12 NA
66 98.95 temperature 20.0 270 > th dose independent rect. 15 5
67 98.99 radiation 40.0 270 < th dose independent rect. 14 7
71 99.06 wind 1.0 270 > th dose independent rect. 14 7
74 99.36 atmosphere 1015.0 270 < th dose independent rect. 14 7
78 99.69 temperature 10.0 270 > th dose independent rect. 21 17
79 99.69 atmosphere 995.0 270 > th dose independent rect. 21 17
93 100.40 wind 9.0 270 < th dose independent rect. 21 17
99 100.94 wind 9.0 270 < th dose independent rect. 14 7
104 101.55 radiation 1.0 270 > th dose independent rect. 16 15
105 101.59 precipitation 0.1 270 < th dose independent rect. 21 17
106 101.59 precipitation 0.1 270 < th dose dependent rect. 21 17
130 102.17 precipitation 0.1 270 < th dose independent rect. 14 7
131 102.17 precipitation 0.1 270 < th dose dependent rect. 14 7
148 104.16 atmosphere 1015.0 270 < th dose independent rect. 15 17
185 105.50 atmosphere 995.0 270 > th dose independent rect. 4 15
189 105.87 atmosphere 995.0 270 > th dose independent rect. 14 7
194 106.20 humidity 50.0 270 > th dose independent rect. 8 7
197 106.32 atmosphere 1015.0 270 < th dose independent rect. 15 5
198 106.32 temperature 10.0 270 > th dose independent rect. 20 19
199 106.44 wind 1.0 270 > th dose independent rect. 15 5
213 106.80 temperature 10.0 270 > th dose dependent rect. 16 3
214 106.85 temperature 10.0 10 > th dose dependent rect. 16 18
252 107.12 wind 9.0 270 < th dose independent rect. 20 19
253 107.14 wind 9.0 270 < th dose independent rect. 15 5
294 108.33 precipitation 0.1 270 < th dose independent rect. 15 5
295 108.33 precipitation 0.1 270 < th dose dependent rect. 15 5
296 108.34 temperature 15.0 270 > th dose independent rect. 2 8
297 108.41 precipitation 0.1 270 < th dose independent rect. 20 19
298 108.41 precipitation 0.1 270 < th dose dependent rect. 20 19
299 108.44 humidity 50.0 270 > th dose independent rect. 21 17
304 108.54 temperature 15.0 10 > th dose independent rect. 16 18
314 108.71 wind 9.0 270 < th dose independent rect. 2 8
316 108.76 radiation 1.0 270 > th dose independent sin 12 NA
318 108.78 atmosphere 995.0 270 > th dose independent rect. 2 8
319 108.78 atmosphere 1015.0 270 < th dose independent rect. 2 8
320 108.78 temperature 10.0 270 > th dose independent rect. 10 16
321 108.83 humidity 50.0 270 > th dose independent rect. 2 8
332 108.89 radiation 1.0 270 < th dose independent sin 12 NA
342 109.02 wind 9.0 270 < th dose independent rect. 10 16
353 109.36 atmosphere 995.0 270 > th dose independent rect. 15 5
363 109.53 wind 1.0 270 > th dose independent rect. 19 9
415 110.33 humidity 90.0 270 < th dose independent rect. 9 6
422 110.50 atmosphere 995.0 10 > th dose independent rect. 16 18
427 110.62 precipitation 0.1 270 < th dose independent rect. 2 8
428 110.62 precipitation 0.1 270 < th dose dependent rect. 2 8
466 111.42 temperature 10.0 10 > th dose independent rect. 10 6
468 111.42 atmosphere 1015.0 10 < th dose independent rect. 10 6
469 111.42 precipitation 0.1 10 < th dose independent rect. 10 6
471 111.42 precipitation 0.1 10 < th dose dependent rect. 10 6
473 111.45 temperature 10.0 10 > th dose dependent rect. 16 6
488 111.70 wind 9.0 10 < th dose independent rect. 16 18
491 111.73 humidity 50.0 10 > th dose independent rect. 16 18
495 111.82 temperature 30.0 270 < th dose independent rect. 2 7
525 112.26 radiation 40.0 270 < th dose independent rect. 2 7
533 112.51 radiation 1.0 270 > th dose independent rect. 11 2
561 113.02 wind 9.0 10 < th dose independent rect. 10 6
570 113.19 precipitation 0.1 270 < th dose independent rect. 10 16
571 113.19 precipitation 0.1 270 < th dose dependent rect. 10 16
593 113.53 precipitation 0.1 10 < th dose independent rect. 16 18
594 113.53 precipitation 0.1 10 < th dose dependent rect. 16 18
602 113.70 temperature 10.0 1440 > th dose independent rect. 11 6
606 113.70 temperature 10.0 1440 > th dose independent rect. 17 18
623 113.82 precipitation 0.1 10 < th dose independent rect. 16 6
625 113.82 precipitation 0.1 10 < th dose dependent rect. 16 6
628 113.88 wind 1.0 10 > th dose independent rect. 16 6
630 113.90 atmosphere 1015.0 10 < th dose independent rect. 16 18
645 114.24 radiation 40.0 10 < th dose dependent rect. 16 6
690 114.76 humidity 90.0 270 < th dose independent rect. 15 5
719 115.14 atmosphere 995.0 10 > th dose independent rect. 16 6
729 115.28 radiation 30.0 10 < th dose independent rect. 16 6
737 115.45 temperature 10.0 10 > th dose independent rect. 16 6
739 115.45 atmosphere 1010.0 10 < th dose independent rect. 16 6
742 115.45 temperature 10.0 10 > th dose independent rect. 22 18
752 115.59 wind 9.0 10 < th dose independent rect. 16 6
756 115.63 radiation 40.0 270 < th dose dependent rect. 15 17
798 116.22 atmosphere 995.0 10 > th dose independent rect. 10 6
838 116.63 temperature 10.0 270 > th dose dependent rect. 9 5
840 116.65 wind 1.0 270 > th dose independent rect. 10 16
864 116.81 humidity 90.0 270 < th dose independent rect. 11 2
867 116.88 radiation 40.0 90 < th dose dependent rect. 16 5
884 117.01 wind 1.0 270 > th dose independent rect. 21 17
939 117.57 wind 9.0 10 < th dose independent rect. 22 18
943 117.64 atmosphere 1015.0 270 < th dose independent rect. 21 17
992 118.27 humidity 50.0 10 > th dose independent rect. 16 6