Os05g0388600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0388600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.35 | 0.309 | 14 | 0.581 | 0.734 | 0.53 | 0.593 | -0.618 | 0.0321 | 4.85 | 2.51 | 80 | -- | -- |
| 45.09 | 0.313 | 14 | 0.593 | 0.714 | 0.545 | 1.06 | -- | 0.0346 | 4.45 | 2.505 | 77 | -- | -- |
| 44.16 | 0.31 | 14 | 0.587 | 0.731 | 0.537 | -- | -0.721 | 0.0348 | 4.79 | 2.69 | 81 | -- | -- |
| 47.54 | 0.321 | 14 | 0.571 | 0.718 | 0.489 | -- | -- | 0.0321 | 5.17 | 2.64 | 77 | -- | -- |
| 64.4 | 0.376 | 14 | 0.599 | -- | 0.38 | -- | -0.701 | 0.0596 | -- | 2.69 | 81 | -- | -- |
| 50.82 | 0.334 | 14 | 0.6 | 0.758 | -- | -0.515 | -- | 0.0754 | 8.3 | -- | -- | -- | -- |
| 51.56 | 0.336 | 14 | 0.583 | 0.763 | -- | -- | -- | 0.0746 | 8.12 | -- | -- | -- | -- |
| 67.62 | 0.385 | 14 | 0.602 | -- | 0.375 | -- | -- | 0.0618 | -- | 2.69 | 81 | -- | -- |
| 56.43 | 0.35 | 14 | -- | 0.719 | 0.454 | -- | -- | -0.0246 | 5.26 | 2.34 | 77 | -- | -- |
| 83.52 | 0.427 | 14 | 0.59 | -- | -- | -- | -- | 0.0838 | -- | -- | -- | -- | -- |
| 60.53 | 0.364 | 14 | -- | 0.766 | -- | -- | -- | 0.0097 | 8.06 | -- | -- | -- | -- |
| 76.81 | 0.41 | 14 | -- | -- | 0.375 | -- | -- | 0.00138 | -- | 2.25 | 63 | -- | -- |
| 92.69 | 0.449 | 14 | -- | -- | -- | -- | -- | 0.0184 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.75 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 11 | 17 |
| 7 | 40.24 | humidity | 60.0 | 270 | > th | dose independent | rect. | 12 | 16 |
| 10 | 40.48 | temperature | 30.0 | 90 | < th | dose independent | rect. | 13 | 16 |
| 12 | 40.59 | temperature | 30.0 | 270 | < th | dose independent | rect. | 11 | 17 |
| 22 | 40.94 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 13 | 17 |
| 31 | 41.24 | temperature | 30.0 | 270 | < th | dose independent | rect. | 11 | 8 |
| 42 | 41.51 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 18 |
| 49 | 41.76 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 23 | 17 |
| 56 | 41.84 | humidity | 70.0 | 10 | > th | dose independent | rect. | 13 | 17 |
| 71 | 42.01 | radiation | 1.0 | 90 | < th | dose independent | rect. | 23 | 17 |
| 78 | 42.06 | radiation | 1.0 | 90 | > th | dose independent | sin | 4 | NA |
| 102 | 42.21 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 109 | 42.25 | temperature | 30.0 | 270 | < th | dose independent | rect. | 24 | 19 |
| 122 | 42.37 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 11 | 8 |
| 127 | 42.39 | radiation | 1.0 | 90 | < th | dose dependent | sin | 7 | NA |
| 143 | 42.47 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 21 | 6 |
| 164 | 42.58 | radiation | 1.0 | 90 | > th | dose independent | rect. | 17 | 22 |
| 169 | 42.61 | radiation | 1.0 | 90 | < th | dose independent | sin | 7 | NA |
| 174 | 42.61 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 13 | 17 |
| 198 | 42.72 | humidity | 60.0 | 270 | > th | dose independent | rect. | 11 | 8 |
| 241 | 42.87 | temperature | 30.0 | 720 | < th | dose independent | rect. | 7 | 10 |
| 254 | 42.90 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 10 | 20 |
| 266 | 42.92 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 8 | 22 |
| 268 | 42.93 | wind | 7.0 | 270 | < th | dose independent | rect. | 3 | 8 |
| 286 | 42.97 | temperature | 30.0 | 720 | < th | dose independent | rect. | 8 | 13 |
| 295 | 43.00 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 22 | 6 |
| 314 | 43.03 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 21 | 19 |
| 320 | 43.05 | temperature | 15.0 | 270 | > th | dose independent | rect. | 3 | 8 |
| 331 | 43.08 | humidity | 60.0 | 270 | > th | dose independent | rect. | 3 | 8 |
| 332 | 43.08 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 8 |
| 334 | 43.08 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 18 |
| 336 | 43.08 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 8 |
| 339 | 43.08 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 18 |
| 363 | 43.12 | temperature | 30.0 | 720 | < th | dose independent | sin | 2 | NA |
| 369 | 43.13 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 11 | 16 |
| 372 | 43.13 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 21 | 7 |
| 375 | 43.14 | temperature | 15.0 | 270 | > th | dose independent | rect. | 22 | 6 |
| 389 | 43.15 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 13 | 16 |
| 453 | 43.26 | temperature | 30.0 | 270 | < th | dose independent | rect. | 22 | 6 |
| 454 | 43.26 | humidity | 50.0 | 270 | > th | dose independent | rect. | 22 | 6 |
| 458 | 43.26 | radiation | 1.0 | 270 | < th | dose independent | rect. | 22 | 6 |
| 465 | 43.26 | temperature | 10.0 | 270 | > th | dose independent | rect. | 4 | 18 |
| 466 | 43.26 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 22 | 6 |
| 471 | 43.26 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 8 |
| 478 | 43.27 | wind | 9.0 | 270 | < th | dose independent | rect. | 22 | 6 |
| 486 | 43.27 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 21 | 22 |
| 508 | 43.30 | temperature | 30.0 | 720 | < th | dose independent | sin | 20 | NA |
| 520 | 43.31 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 22 | 6 |
| 523 | 43.31 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 8 |
| 524 | 43.31 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 8 |
| 525 | 43.31 | temperature | 10.0 | 270 | > th | dose independent | rect. | 11 | 16 |
| 529 | 43.31 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 22 | 6 |
| 548 | 43.34 | wind | 9.0 | 270 | < th | dose independent | rect. | 11 | 16 |
| 569 | 43.37 | radiation | 40.0 | 270 | < th | dose independent | rect. | 12 | 15 |
| 573 | 43.37 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 23 | 6 |
| 583 | 43.38 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 4 | 18 |
| 593 | 43.40 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 20 |
| 598 | 43.40 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 20 |
| 601 | 43.41 | wind | 9.0 | 270 | < th | dose independent | rect. | 4 | 18 |
| 606 | 43.41 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 18 | 23 |
| 684 | 43.49 | humidity | 80.0 | 270 | > th | dose independent | rect. | 23 | 4 |
| 742 | 43.55 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 4 | 18 |
| 754 | 43.57 | radiation | 1.0 | 90 | < th | dose independent | rect. | 23 | 8 |
| 758 | 43.57 | wind | 9.0 | 270 | < th | dose dependent | rect. | 4 | 16 |
| 774 | 43.58 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 9 | 19 |
| 793 | 43.59 | radiation | 1.0 | 90 | < th | dose independent | rect. | 21 | 23 |
| 815 | 43.60 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 11 | 16 |
| 825 | 43.60 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 11 | 16 |
| 874 | 43.64 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 13 | 21 |
| 900 | 43.67 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 13 | 16 |
| 903 | 43.67 | radiation | 10.0 | 10 | < th | dose dependent | no | NA | NA |
| 917 | 43.68 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 926 | 43.69 | radiation | 1.0 | 90 | < th | dose independent | rect. | 17 | 23 |