BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0388600 Os05g0388600|AK105904
(378 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0388600 Conserved hypothetical protein 536 e-153
Os01g0957200 Conserved hypothetical protein 473 e-134
Os01g0826900 Protein of unknown function DUF399 family protein 169 4e-42
Os04g0524400 Conserved hypothetical protein 114 1e-25
Os07g0240300 Conserved hypothetical protein 97 2e-20
AK110446 81 1e-15
Os01g0812900 Conserved hypothetical protein 75 6e-14
>Os05g0388600 Conserved hypothetical protein
Length = 378
Score = 536 bits (1382), Expect = e-153, Method: Compositional matrix adjust.
Identities = 267/283 (94%), Positives = 267/283 (94%)
Query: 96 NRREALFVLAQLGRKLESLPADLAAAIEGGRVPGEIVQRFADLEKSGLFRWLLQFGGFKE 155
NRREALFVLAQLGRKLESLPADLAAAIEGGRVPGEIVQRFADLEKSGLFRWLLQFGGFKE
Sbjct: 96 NRREALFVLAQLGRKLESLPADLAAAIEGGRVPGEIVQRFADLEKSGLFRWLLQFGGFKE 155
Query: 156 RLLADDLFLAKVAMECGVGIFTKTAAEYERRRENFVKELXXXXXXXXXXXXXXXXLVWLP 215
RLLADDLFLAKVAMECGVGIFTKTAAEYERRRENFVKEL LVWLP
Sbjct: 156 RLLADDLFLAKVAMECGVGIFTKTAAEYERRRENFVKELDFVIADVVMAIVADFMLVWLP 215
Query: 216 APTVSLQPPLAVNAGSIAKFFHNCPDNAFQVALAGTSYSLLQRVGAIMRNGAKLFAVGTS 275
APTVSLQPPLAVNAGSIAKFFHNCPDNAFQVALAGTSYSLLQRVGAIMRNGAKLFAVGTS
Sbjct: 216 APTVSLQPPLAVNAGSIAKFFHNCPDNAFQVALAGTSYSLLQRVGAIMRNGAKLFAVGTS 275
Query: 276 ASLIGTGVTNALIKARKAVSKDFEGESEDIPIVSTSVAYGVYMAVSSNLRYQILAGVIEQ 335
ASLIGTGVTNALIKARKAVSKDFEGESEDIPIVSTSVAYGVYMAVSSNLRYQILAGVIEQ
Sbjct: 276 ASLIGTGVTNALIKARKAVSKDFEGESEDIPIVSTSVAYGVYMAVSSNLRYQILAGVIEQ 335
Query: 336 RMLEPLLHHHKLVLSALCFAVRTGNTFLGSLLWVDYAKWIGIQ 378
RMLEPLLHHHKLVLSALCFAVRTGNTFLGSLLWVDYAKWIGIQ
Sbjct: 336 RMLEPLLHHHKLVLSALCFAVRTGNTFLGSLLWVDYAKWIGIQ 378
>Os01g0957200 Conserved hypothetical protein
Length = 389
Score = 473 bits (1218), Expect = e-134, Method: Compositional matrix adjust.
Identities = 227/283 (80%), Positives = 251/283 (88%)
Query: 96 NRREALFVLAQLGRKLESLPADLAAAIEGGRVPGEIVQRFADLEKSGLFRWLLQFGGFKE 155
NRREALFVLAQLGRKLESLP+DLAAA+EGGRV GEIV+RFA++E S L RWLLQF GF+E
Sbjct: 101 NRREALFVLAQLGRKLESLPSDLAAAVEGGRVTGEIVRRFAEMEGSALLRWLLQFQGFRE 160
Query: 156 RLLADDLFLAKVAMECGVGIFTKTAAEYERRRENFVKELXXXXXXXXXXXXXXXXLVWLP 215
RLLADDLFLAK+AMECGVG+ KTAAEYE+RRENFVKE+ LV+LP
Sbjct: 161 RLLADDLFLAKLAMECGVGVIAKTAAEYEKRRENFVKEIDIVIADVVMAIVADFMLVYLP 220
Query: 216 APTVSLQPPLAVNAGSIAKFFHNCPDNAFQVALAGTSYSLLQRVGAIMRNGAKLFAVGTS 275
APTVSLQPPLA NAG IA FFHNCPDNAFQ+ALAG SYS+LQR+GAI+RNGAKLF VGTS
Sbjct: 221 APTVSLQPPLATNAGHIANFFHNCPDNAFQIALAGRSYSILQRLGAILRNGAKLFTVGTS 280
Query: 276 ASLIGTGVTNALIKARKAVSKDFEGESEDIPIVSTSVAYGVYMAVSSNLRYQILAGVIEQ 335
ASLIGTGVTNALIKARKAV K+ + E EDIP++STSVAYGVYMAVSSNLRYQILAGVIEQ
Sbjct: 281 ASLIGTGVTNALIKARKAVDKELDDEVEDIPVLSTSVAYGVYMAVSSNLRYQILAGVIEQ 340
Query: 336 RMLEPLLHHHKLVLSALCFAVRTGNTFLGSLLWVDYAKWIGIQ 378
RMLEPLLH+HKL+LSALCFAVRTGNTFLGSLLWVDYA+W+G+Q
Sbjct: 341 RMLEPLLHNHKLLLSALCFAVRTGNTFLGSLLWVDYARWVGVQ 383
>Os01g0826900 Protein of unknown function DUF399 family protein
Length = 723
Score = 169 bits (427), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 105/293 (35%), Positives = 161/293 (54%), Gaps = 11/293 (3%)
Query: 96 NRREALFVLAQLGRKLESLPADLAAAIEGGRVPGEIVQRFADLEKSGLFRWLL-QFGGFK 154
+R E V+ GR+ E+LP DL I+ G V EI+Q F DLEK + L+ +F GF+
Sbjct: 392 DRAEIARVMNAAGRRREALPQDLQKGIDLGVVSPEILQNFFDLEKYPVMAELIHRFQGFR 451
Query: 155 ERLLADDLFLAKVAMECGVGIFTKTAAEYERRRENFVKELXXXXXXXXXXXXXXXXLVWL 214
ERLLAD FL ++A+E G+ I T A+YE+R+ F++E+ VWL
Sbjct: 452 ERLLADPKFLHRLAIEEGISITTTLIAQYEKRKGRFLEEIDYVLTDTIRGSVVDFFTVWL 511
Query: 215 PAPTVSLQPPLAVNAGS----IAKFFHNCPDNAFQVALAGTSYSLLQRVGAIMRNGAKLF 270
PAPT+SL +G + + PDNAFQ + G S++ QR +++ G KL
Sbjct: 512 PAPTISLLSLGDNGSGESLELLKGLLGSLPDNAFQKGIMGQSWNTNQRFASVLMGGIKLA 571
Query: 271 AVGTSASLIGTGVTNALIKARKAV---SKDFEGESEDIPIVSTSVAYGVYMAVSSNLRYQ 327
VG +S IG GV + ++ A + V S E PI ++ Y ++ S+NLRYQ
Sbjct: 572 GVGFISS-IGAGVASDVLYAARRVLRPSTSVETARRRTPIWKSATVYSCFLGTSANLRYQ 630
Query: 328 ILAGVIEQRMLEPLL--HHHKLVLSALCFAVRTGNTFLGSLLWVDYAKWIGIQ 378
++AG++E R+ E L+ ++ L+ + L F RT N++ G+ W+D A+ G+Q
Sbjct: 631 VIAGLVEHRLGEYLMAYYNQPLLANLLSFVSRTINSYWGTQQWIDLARATGLQ 683
>Os04g0524400 Conserved hypothetical protein
Length = 399
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/275 (29%), Positives = 130/275 (47%), Gaps = 15/275 (5%)
Query: 113 SLPADLAAAIEGGRVPGEIVQRFADLEKSG--LFRWLLQFGGFKERLLADDLFLAKVAME 170
SLPAD+ A + + ++ R+ DL+ L + F + R+LAD FL KV E
Sbjct: 131 SLPADMMEAAKDAGIREVLLLRYFDLQAGPWPLAAMIRAFSMLRNRMLADPSFLFKVGTE 190
Query: 171 CGVGIFTKTAAEYERRRENFVKELXXXXXXXXXXXXXXXXLVWLPAPTVSLQPPLAVNA- 229
+ T AE ++R E+F E LV L AP V A
Sbjct: 191 VVIDSCCATFAEVQKRGEDFWAEFELYAADLLVGVVVDIALVGLLAPYVRFGKASASTGP 250
Query: 230 -GSIAKFFHNCPDNAFQVALAGTSYSLLQRVGAIMRNGAKLFAVGTSASLIGTGVTNALI 288
G + + P + F+ G +++ QR+G G +VG +IG G+ N ++
Sbjct: 251 FGRFNRMAGSLPSSVFEAERPGCRFTVQQRIGTFFYKGVLYGSVGFVCGIIGQGIANMIM 310
Query: 289 KARKAVSKDFEGESEDIPI---VSTSVAYGVYMAVSSNLRYQILAGVIEQRMLE--PLLH 343
A+++V K EDIP+ + ++ +GV++AVSSN RYQI+ G+ +R++E P+
Sbjct: 311 TAKRSVKKS----DEDIPVPPLIKSAALWGVFLAVSSNTRYQIINGL--ERVVETSPIAK 364
Query: 344 HHKLVLSALCFAVRTGNTFLGSLLWVDYAKWIGIQ 378
V A VR N G + +VD+A+W G+Q
Sbjct: 365 RVPPVAMAFTVGVRFANNIYGGMQFVDWARWSGVQ 399
>Os07g0240300 Conserved hypothetical protein
Length = 443
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/283 (28%), Positives = 128/283 (45%), Gaps = 21/283 (7%)
Query: 108 GRKLESLPADLAAAIEGGRVPGEIVQRFADLEKSG--LFRWLLQFGGFKERLLADDLFLA 165
G L SLPAD+ A + + ++ R+ D++ S L + + R+L D FL
Sbjct: 170 GVSLPSLPADMIEAAKSVGIQKLLLLRYLDMQASAWPLGPAIRSCSLLRNRMLVDPSFLF 229
Query: 166 KVAMECGVGIFTKTAAEYERRRENFVKELXXXXXXXXXXXXXXXXLVWLPAPTV-----S 220
K+ E + T AE ++R E F E LV + AP S
Sbjct: 230 KIGTEIVIDTCCATFAEVQKRGEEFWSEFELYAADMLVGVVVNVALVGMLAPYARFGGGS 289
Query: 221 LQPPLAVNAGSIAKFFHNCPDNAFQVALAGTSYSLLQRVGAIMRNGAKLFAVGTSASLIG 280
P L G + + + P + F+ G S+S+ QR+G G VG L+G
Sbjct: 290 ASPGLL---GRVRHAYDSLPSSVFEAERPGYSFSIQQRIGTYFFKGILYGTVGFFCGLVG 346
Query: 281 TGVTNALIKARKAVSKDFEGESEDIPI---VSTSVAYGVYMAVSSNLRYQILAGVIEQRM 337
G+ N ++ A+++V K +D+P+ + TS +G ++ VSSN RYQI+ G+ +R+
Sbjct: 347 QGIANLIMTAKRSVKK----SDDDVPVPPLLKTSALWGAFLGVSSNTRYQIINGL--ERV 400
Query: 338 LE--PLLHHHKLVLSALCFAVRTGNTFLGSLLWVDYAKWIGIQ 378
+E P+ V A VR N G + +VD+A+ G Q
Sbjct: 401 VEASPVAKRVPAVSLAFTVGVRFANNIYGGMQFVDWARMTGCQ 443
>AK110446
Length = 413
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 119/268 (44%), Gaps = 4/268 (1%)
Query: 114 LPADLAAAIEGGRVPGEIVQRFADLEKSGLFRWLLQ-FGGFKERLLADDLFLAKVAMECG 172
LPAD+ + + + ++ L+ L+Q F ++R++AD+ FL KV E
Sbjct: 147 LPADMLETAKSYGIRSTALAKYISLQSLVFTGGLVQRFPWIRDRMIADEKFLLKVVAEVL 206
Query: 173 VGIFTKTAAEYERRRENFVKELXXXXXXXXXXXXXXXXLVWLPAPTVSLQPPLAV-NAGS 231
+ T AE +R + F +E LV L AP L A+ +
Sbjct: 207 IDSGCATVAEVRKRGDEFWQEFEFYLSDLLVGCVLDVVLVSLMAPRAVLGGKAALLGQSA 266
Query: 232 IAKFFHNCPDNAFQVALAGT-SYSLLQRVGAIMRNGAKLFAVGTSASLIGTGVTNALIKA 290
+ K P A + ++ G Y+L R + + G + IG G+ N+L+
Sbjct: 267 LQKCLGGIPSAALEASVKGVKQYTLGSRFACLGVKFLEYSLAGITCGFIGQGIANSLMML 326
Query: 291 RKAVSKDFEGESEDIPIVSTSVAYGVYMAVSSNLRYQILAGVIEQRMLEPLLHHHKLVLS 350
++ + + E + P+ T++ +G++M VSSNLRYQ + G +E+ + + +
Sbjct: 327 KRQIHGEKEDDVAVPPLFRTALVWGLFMGVSSNLRYQAVFG-LERAVDLTIAKRVPAIAY 385
Query: 351 ALCFAVRTGNTFLGSLLWVDYAKWIGIQ 378
A+R N +G ++D A+W G+Q
Sbjct: 386 GTTVAIRFINNVIGGENFIDMARWAGVQ 413
>Os01g0812900 Conserved hypothetical protein
Length = 348
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 99/229 (43%), Gaps = 19/229 (8%)
Query: 152 GFKERLLADDLFLAKVAMECGVGIFTKTAAEYERRRENFVKELXXXXXXXXXXXXXXXXL 211
G+ R+ AD F KV ME VG+ + R + EL L
Sbjct: 98 GWAARVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFVL 157
Query: 212 VWLPAPTVSLQPPLAVNAGSIAKFFHNCPDNAFQVALAGTSYSLLQRVGAIMRNGAKLFA 271
++L APT + A + P + F+ +YSL RV ++ GA A
Sbjct: 158 MYLLAPTAGASAAASAAASGL-------PSHMFEAG----AYSLGSRVATLLSKGATFAA 206
Query: 272 VGTSASLIGTGVTNALIKARKAVSKDFEGESEDIPIVSTSVAYGVYMAVSSNLRYQILAG 331
VG +A L GT ++N LI RK + FE ++ P + + + ++M VSSNLRYQ L G
Sbjct: 207 VGFAAGLAGTAISNGLISLRKRMDPAFETPNKAPPTLLNAATWAIHMGVSSNLRYQTLNG 266
Query: 332 VIEQRMLEPLLHHH--KLVLSALCFAVRTGNTFLGSLLWVDYAKWIGIQ 378
V E LL + V A+R N LG + +V A+ G Q
Sbjct: 267 V------EYLLANAAPPSVFKVSVVALRCINNVLGGMSFVLLARLTGSQ 309
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.138 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,776,563
Number of extensions: 309654
Number of successful extensions: 708
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 694
Number of HSP's successfully gapped: 7
Length of query: 378
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 275
Effective length of database: 11,657,759
Effective search space: 3205883725
Effective search space used: 3205883725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 157 (65.1 bits)