Os01g0812900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0812900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.98 | 0.376 | 12 | -1.12 | 1.04 | -1.6 | -1.07 | 1.15 | -0.413 | 10.7 | 8.297 | 725 | -- | -- |
| 65.35 | 0.377 | 12 | -1.08 | 1.02 | -1.28 | -1.04 | -- | -0.366 | 11.8 | 8.395 | 727 | -- | -- |
| 65.75 | 0.378 | 12 | -1.17 | 0.443 | -1.53 | -- | 1.29 | -0.413 | 8.37 | 6.018 | 490 | -- | -- |
| 69.97 | 0.39 | 12 | -1.13 | 1.03 | -1.32 | -- | -- | -0.397 | 11.6 | 9.725 | 727 | -- | -- |
| 66.8 | 0.381 | 12 | -1.06 | -- | -1.26 | -- | 1.23 | -0.336 | -- | 8.5 | 348 | -- | -- |
| 73.11 | 0.401 | 12 | -1.08 | 1.38 | -- | -1.14 | -- | -0.329 | 14.6 | -- | -- | -- | -- |
| 77.67 | 0.413 | 12 | -1.11 | 1.38 | -- | -- | -- | -0.336 | 14.6 | -- | -- | -- | -- |
| 71.75 | 0.395 | 12 | -1.13 | -- | -1.25 | -- | -- | -0.384 | -- | 9.321 | 329 | -- | -- |
| 103.17 | 0.473 | 12 | -- | 1.03 | -1.35 | -- | -- | -0.276 | 11.5 | 10 | 727 | -- | -- |
| 188.53 | 0.642 | 12 | -1.17 | -- | -- | -- | -- | -0.37 | -- | -- | -- | -- | -- |
| 110.23 | 0.491 | 12 | -- | 1.4 | -- | -- | -- | -0.212 | 14.7 | -- | -- | -- | -- |
| 105.11 | 0.478 | 12 | -- | -- | -1.28 | -- | -- | -0.267 | -- | 10 | 339 | -- | -- |
| 224.64 | 0.7 | 12 | -- | -- | -- | -- | -- | -0.241 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 61.52 | humidity | 60.0 | 30 | > th | dose dependent | rect. | 3 | 17 |
| 3 | 61.63 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 21 | 22 |
| 12 | 62.30 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 21 | 7 |
| 18 | 62.62 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 9 | 19 |
| 20 | 62.69 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 2 | 16 |
| 21 | 62.74 | wind | 1.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 22 | 62.74 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 1 | 18 |
| 23 | 62.77 | humidity | 70.0 | 10 | > th | dose independent | rect. | 3 | 17 |
| 24 | 62.78 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 7 | 21 |
| 30 | 62.86 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 12 | 16 |
| 32 | 62.89 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 9 | 10 |
| 34 | 62.92 | radiation | 10.0 | 270 | < th | dose dependent | sin | 2 | NA |
| 43 | 63.02 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 2 |
| 49 | 63.11 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 12 | 19 |
| 50 | 63.12 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 7 | 13 |
| 56 | 63.18 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 12 | 8 |
| 61 | 63.20 | radiation | 10.0 | 270 | < th | dose independent | rect. | 23 | 20 |
| 69 | 63.23 | radiation | 10.0 | 720 | < th | dose dependent | sin | 20 | NA |
| 75 | 63.24 | humidity | 60.0 | 30 | > th | dose dependent | rect. | 5 | 15 |
| 84 | 63.29 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 90 | 63.31 | wind | 7.0 | 43200 | > th | dose independent | rect. | 17 | 3 |
| 91 | 63.31 | humidity | 90.0 | 270 | < th | dose independent | rect. | 7 | 16 |
| 92 | 63.31 | radiation | 10.0 | 720 | < th | dose dependent | sin | 14 | NA |
| 94 | 63.32 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 15 | 2 |
| 95 | 63.32 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 23 | 21 |
| 97 | 63.33 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 10 | 10 |
| 100 | 63.36 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 106 | 63.39 | radiation | 10.0 | 270 | < th | dose independent | rect. | 1 | 18 |
| 134 | 63.50 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 11 | 5 |
| 140 | 63.52 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 11 | 9 |
| 143 | 63.56 | humidity | 80.0 | 720 | < th | dose independent | rect. | 11 | 7 |
| 156 | 63.60 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 8 | 11 |
| 189 | 63.69 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 5 | 15 |
| 203 | 63.74 | wind | 7.0 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 243 | 63.85 | humidity | 80.0 | 720 | > th | dose independent | rect. | 8 | 11 |
| 257 | 63.89 | wind | 1.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 266 | 63.91 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 3 | 17 |
| 277 | 63.94 | humidity | 70.0 | 10 | > th | dose dependent | sin | 23 | NA |
| 280 | 63.95 | wind | 7.0 | 43200 | > th | dose independent | rect. | 17 | 6 |
| 281 | 63.95 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 17 | 3 |
| 286 | 63.96 | wind | 7.0 | 43200 | < th | dose independent | rect. | 17 | 6 |
| 290 | 63.96 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 13 | 7 |
| 316 | 64.01 | wind | 7.0 | 43200 | > th | dose independent | rect. | 16 | 13 |
| 331 | 64.04 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 14 | 4 |
| 335 | 64.04 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 14 | 4 |
| 343 | 64.05 | wind | 7.0 | 43200 | < th | dose independent | rect. | 16 | 13 |
| 356 | 64.07 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 8 | 6 |
| 380 | 64.11 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 14 | 6 |
| 384 | 64.12 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 14 | 4 |
| 418 | 64.16 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 15 | 6 |
| 434 | 64.18 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 8 | 6 |
| 451 | 64.20 | radiation | 10.0 | 720 | > th | dose independent | rect. | 11 | 20 |
| 474 | 64.22 | radiation | 10.0 | 720 | < th | dose dependent | no | NA | NA |
| 483 | 64.23 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 16 | 7 |
| 502 | 64.27 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 19 | 2 |
| 604 | 64.37 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 16 | 13 |
| 686 | 64.43 | wind | 9.0 | 14400 | < th | dose independent | rect. | 20 | 7 |
| 732 | 64.45 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 13 | 5 |
| 740 | 64.46 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 787 | 64.50 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 827 | 64.55 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 828 | 64.56 | wind | 7.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 832 | 64.56 | radiation | 10.0 | 720 | > th | dose independent | rect. | 11 | 6 |
| 905 | 64.61 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 913 | 64.62 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 914 | 64.62 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 954 | 64.65 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 16 | 21 |
| 956 | 64.65 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 993 | 64.67 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 15 | 16 |