Os12g0283800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os12g0283800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.77 | 0.273 | 12.6 | 0.0655 | 0.24 | 0.57 | 0.753 | 1.79 | -0.328 | 20.1 | 26.65 | 126 | -- | -- |
| 36.43 | 0.281 | 12.6 | 0.0641 | 0.224 | 0.352 | 0.57 | -- | -0.328 | 19.5 | 16.13 | 170 | -- | -- |
| 35.33 | 0.277 | 12.6 | 0.042 | 0.238 | 0.595 | -- | 1.62 | -0.328 | 20.3 | 28.67 | 126 | -- | -- |
| 36.78 | 0.282 | 12.6 | 0.0244 | 0.294 | 0.486 | -- | -- | -0.349 | 22 | 4.795 | 167 | -- | -- |
| 37.48 | 0.285 | 12.6 | 0.0641 | -- | 0.532 | -- | 1.41 | -0.334 | -- | 33.57 | 275 | -- | -- |
| 38.55 | 0.291 | 12.6 | 0.0579 | 0.23 | -- | 0.843 | -- | -0.305 | 17.7 | -- | -- | -- | -- |
| 40.27 | 0.297 | 12.6 | 0.0524 | 0.236 | -- | -- | -- | -0.302 | 18 | -- | -- | -- | -- |
| 38.58 | 0.289 | 12.6 | 0.0281 | -- | 0.4 | -- | -- | -0.338 | -- | 16.9 | 409 | -- | -- |
| 36.76 | 0.282 | 12.6 | -- | 0.29 | 0.492 | -- | -- | -0.335 | 22.3 | 4.913 | 170 | -- | -- |
| 43.17 | 0.307 | 12.6 | 0.0455 | -- | -- | -- | -- | -0.307 | -- | -- | -- | -- | -- |
| 40.35 | 0.297 | 12.6 | -- | 0.235 | -- | -- | -- | -0.308 | 18 | -- | -- | -- | -- |
| 38.6 | 0.289 | 12.6 | -- | -- | 0.401 | -- | -- | -0.341 | -- | 16.92 | 409 | -- | -- |
| 43.22 | 0.307 | 12.6 | -- | -- | -- | -- | -- | -0.312 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.23 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 2 | 31.42 | temperature | 25 | 270 | > th | dose dependent | sin | 7 | NA |
| 3 | 31.44 | temperature | 25 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 4 | 31.46 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 8 |
| 6 | 31.49 | temperature | 25 | 90 | > th | dose dependent | sin | 4 | NA |
| 14 | 31.63 | temperature | 25 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 44 | 31.85 | temperature | 10 | 90 | > th | dose dependent | sin | 2 | NA |
| 62 | 31.99 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 20 |
| 66 | 32.01 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 18 |
| 215 | 32.69 | temperature | 30 | 90 | < th | dose dependent | sin | 2 | NA |
| 240 | 32.74 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 10 |
| 250 | 32.75 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 17 |
| 265 | 32.78 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 266 | 32.78 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 22 |
| 285 | 32.84 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 13 |
| 344 | 32.98 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 7 |
| 373 | 33.05 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 408 | 33.12 | temperature | 30 | 90 | < th | dose independent | sin | 5 | NA |
| 424 | 33.15 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 11 |
| 434 | 33.17 | temperature | 10 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 451 | 33.21 | radiation | 40 | 270 | < th | dose independent | sin | 11 | NA |
| 452 | 33.21 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 5 |
| 519 | 33.32 | radiation | 40 | 270 | > th | dose independent | rect. | 9 | 1 |
| 531 | 33.34 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 2 |
| 532 | 33.34 | radiation | 30 | 270 | > th | dose dependent | sin | 9 | NA |
| 555 | 33.38 | radiation | 30 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 585 | 33.40 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 22 |
| 589 | 33.41 | radiation | 40 | 270 | > th | dose independent | sin | 11 | NA |
| 605 | 33.43 | temperature | 30 | 90 | > th | dose independent | rect. | 8 | 7 |
| 640 | 33.47 | temperature | 30 | 90 | > th | dose independent | sin | 5 | NA |
| 684 | 33.52 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 14 |
| 692 | 33.53 | wind | 1 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 733 | 33.56 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 4 |
| 760 | 33.57 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 12 |
| 763 | 33.57 | temperature | 20 | 1440 | > th | dose independent | rect. | 9 | 16 |
| 775 | 33.58 | radiation | 40 | 270 | < th | dose independent | rect. | 9 | 23 |
| 778 | 33.58 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 2 |
| 837 | 33.62 | temperature | 30 | 90 | < th | dose dependent | rect. | 6 | 11 |
| 846 | 33.63 | temperature | 20 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 879 | 33.65 | temperature | 30 | 90 | < th | dose dependent | rect. | 6 | 13 |
| 923 | 33.69 | temperature | 25 | 720 | < th | dose independent | rect. | 6 | 5 |
| 982 | 33.72 | temperature | 20 | 1440 | > th | dose independent | sin | 18 | NA |