BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0283800 Os12g0283800|AK060975
(236 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G24690.1 | chr5:8455783-8458513 REVERSE LENGTH=522 285 1e-77
AT5G22790.1 | chr5:7599395-7601573 REVERSE LENGTH=434 70 1e-12
AT2G37860.3 | chr2:15856952-15858793 FORWARD LENGTH=433 64 9e-11
AT3G56140.1 | chr3:20829407-20832669 FORWARD LENGTH=746 55 4e-08
AT2G40400.1 | chr2:16869363-16872569 FORWARD LENGTH=736 49 3e-06
>AT5G24690.1 | chr5:8455783-8458513 REVERSE LENGTH=522
Length = 521
Score = 285 bits (730), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 136/215 (63%), Positives = 169/215 (78%), Gaps = 4/215 (1%)
Query: 1 VVNALTASCCNVMVLGLLAPCRSYGSTSRFDFQNAIEKLPNNIFEKSYPLRQFDLQKRIS 60
++N LT S CN + LLAPCRSYG+T RFD QN ++KLPNN+FE SYPLR+FDLQKR
Sbjct: 282 LINVLTVSACNAAAVWLLAPCRSYGNTFRFDLQNTLQKLPNNLFEMSYPLREFDLQKRFH 341
Query: 61 AFFYKAAELSLLGVVAGSIQGGLSKALSARKERRLSVTIPSVSTNALGYGAFLGLYANLR 120
+ FYKAAELS+LG+ AG++QG LS L+ +K+ R+SVT+PS+STNALGYGAFLG+YANLR
Sbjct: 342 SLFYKAAELSILGLAAGTLQGSLSNVLAGKKKNRVSVTVPSISTNALGYGAFLGIYANLR 401
Query: 121 YQLLCGLDQYMVRRFDVLGVAIFFSTALRLTNIQIGESSRRTWLGEEADP--QYSDRLLR 178
YQLLCG ++ + FDV+GVA+FF TALR+ N+Q+GE SR+ WLG EADP Q D L +
Sbjct: 402 YQLLCGFERGVSSHFDVIGVALFFGTALRIMNVQLGEKSRQVWLGVEADPLAQSDDLLAK 461
Query: 179 AYKRPVEVAGDQQDSRWFISKDAIVSGLGLLGIKQ 213
AY RP E A + S+WFISK+AIVS GLLG KQ
Sbjct: 462 AYNRPSEEAVAKPSSKWFISKNAIVS--GLLGKKQ 494
>AT5G22790.1 | chr5:7599395-7601573 REVERSE LENGTH=434
Length = 433
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 81/157 (51%), Gaps = 17/157 (10%)
Query: 11 NVMVLGLLAPCRSYG-----STSRF-DFQNAIEKLPNNIFEKSYPLRQFDLQKRISAFFY 64
+V ++GLLAP G ST F D + A LP+++FE P +F + +RI+ FFY
Sbjct: 261 DVALVGLLAPYARIGKPSVASTGLFKDLKRACASLPSSVFEAERPGCKFSVNQRIATFFY 320
Query: 65 KAAELSLLGVVAGSIQGGLSK----ALSARKERRLSVTIPSVSTNALGYGAFLGLYANLR 120
K +G G I G++ A + K+ V IP + +A +G FLGL +N R
Sbjct: 321 KGLLYGSVGFGCGLIGQGIANLIMTAKRSVKKSEEDVPIPPLFESAALWGVFLGLSSNAR 380
Query: 121 YQLLCGLDQYM-----VRRFDVLGVAIFFSTALRLTN 152
YQ++ GL++ + +R V VA+ F+ +R N
Sbjct: 381 YQIINGLERVVEGSTAAKRIPV--VAMAFTVGVRFAN 415
>AT2G37860.3 | chr2:15856952-15858793 FORWARD LENGTH=433
Length = 432
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 83/168 (49%), Gaps = 20/168 (11%)
Query: 1 VVNALTASCCNVMVLGLLAPCRSYGSTS-------RFDFQNAIEKLPNNIFEKSYPLRQF 53
V + L + N+ ++G+LAP +G S R F A LP+++FE P +F
Sbjct: 251 VADLLVGTVVNIALVGMLAPYVRFGQPSASPGFLGRMVF--AYNALPSSVFEAERPGCRF 308
Query: 54 DLQKRISAFFYKAAELSLLGVVAGSIQGGLSKALSARK----ERRLSVTIPSVSTNALGY 109
Q+R++ +FYK +G G + G++ + K + ++ +P + +A +
Sbjct: 309 SAQQRLATYFYKGIMYGAVGFGCGIVGQGIANLIMTAKRNINKSEENIPVPPLIKSAALW 368
Query: 110 GAFLGLYANLRYQLLCGLDQYM-----VRRFDVLGVAIFFSTALRLTN 152
G FL + +N RYQ++ GL++ + ++F +A F+ +RL N
Sbjct: 369 GVFLSVSSNTRYQIINGLERVVEASPFAKKFPPAAMA--FTVGVRLAN 414
>AT3G56140.1 | chr3:20829407-20832669 FORWARD LENGTH=746
Length = 745
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 76/146 (52%), Gaps = 17/146 (11%)
Query: 1 VVNALTASCCNVMVLGLLAPCRSYGS----TSRFDFQNAIEKL----PNNIFEKSYPLRQ 52
+ + + S + + L AP S+ S T+ D +A+ L P+N F+KS R+
Sbjct: 522 ITDTVRGSVVDFFTVWLPAPTLSFLSYADETTGPDSIDALRGLLGSIPDNAFQKSLAGRE 581
Query: 53 FDLQKRISAFFYKAAELSLLGVVAGSIQGGLSKALS-ARKERRLSVTI-------PSVST 104
++L RI++ +L+ +GVV+ G S AL+ ARK + + + P + T
Sbjct: 582 WNLNLRIASVIVGGLKLAGVGVVSSFAAVGASNALNIARKVIKPELVVAEKPKRSPLLKT 641
Query: 105 NALGYGAFLGLYANLRYQLLCGLDQY 130
A+ YG FLG ANLRYQ++ GL ++
Sbjct: 642 -AMVYGGFLGTSANLRYQIIAGLIEH 666
>AT2G40400.1 | chr2:16869363-16872569 FORWARD LENGTH=736
Length = 735
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 17/148 (11%)
Query: 1 VVNALTASCCNVMVLGLLAPCRSY--------GSTSRFDFQNAIEKLPNNIFEKSYPLRQ 52
+ +++ AS + + L AP S+ G S + + +P+N F+KS ++
Sbjct: 513 ITDSVRASVVDFFTVWLPAPTLSFISYADETIGPNSIDALRGLLGSIPDNAFQKSLGGQE 572
Query: 53 FDLQKRISAFFYKAAELSLLGVVAGSIQGGLSKALSA-RKERRLSVTI-------PSVST 104
+ L RI++ +L+ +GVV+ G S AL A RK + + + P + T
Sbjct: 573 WTLSLRIASVIIGGLKLAGVGVVSSFAAVGSSNALYAIRKFIKPELGVGEQAKRSPMLKT 632
Query: 105 NALGYGAFLGLYANLRYQLLCGLDQYMV 132
AL YG +LG +N+RYQ++ GL ++ +
Sbjct: 633 -ALVYGGYLGTSSNIRYQIIAGLIEHRI 659
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.136 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,330,650
Number of extensions: 162001
Number of successful extensions: 392
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 391
Number of HSP's successfully gapped: 5
Length of query: 236
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 141
Effective length of database: 8,502,049
Effective search space: 1198788909
Effective search space used: 1198788909
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)