BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0283800 Os12g0283800|AK060975
(236 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0283800 Conserved hypothetical protein 454 e-128
Os04g0524400 Conserved hypothetical protein 69 3e-12
>Os12g0283800 Conserved hypothetical protein
Length = 236
Score = 454 bits (1168), Expect = e-128, Method: Compositional matrix adjust.
Identities = 226/236 (95%), Positives = 226/236 (95%)
Query: 1 VVNALTASCCNVMVLGLLAPCRSYGSTSRFDFQNAIEKLPNNIFEKSYPLRQFDLQKRIS 60
VVNALTASCCNVMVLGLLAPCRSYGSTSRFDFQNAIEKLPNNIFEKSYPLRQFDLQKRIS
Sbjct: 1 VVNALTASCCNVMVLGLLAPCRSYGSTSRFDFQNAIEKLPNNIFEKSYPLRQFDLQKRIS 60
Query: 61 AFFYKAAELSLLGVVAGSIQGGLSKALSARKERRLSVTIPSVSTNALGYGAFLGLYANLR 120
AFFYKAAELSLLGVVAGSIQGGLSKALSARKERRLSVTIPSVSTNALGYGAFLGLYANLR
Sbjct: 61 AFFYKAAELSLLGVVAGSIQGGLSKALSARKERRLSVTIPSVSTNALGYGAFLGLYANLR 120
Query: 121 YQLLCGLDQYMVRRFDVLGVAIFFSTALRLTNIQIGESSRRTWLGEEADPQYSDRLLRAY 180
YQLLCGLDQYMVRRFDVLGVAIFFSTALRLTNIQIGESSRRTWLGEEADPQYSDRLLRAY
Sbjct: 121 YQLLCGLDQYMVRRFDVLGVAIFFSTALRLTNIQIGESSRRTWLGEEADPQYSDRLLRAY 180
Query: 181 KRPVEVAGDQQDSRWFISKDAIVSGLGLLGIKQGGTEAALSKPXXXXXXXXXXAST 236
KRPVEVAGDQQDSRWFISKDAIVSGLGLLGIKQGGTEAALSKP AST
Sbjct: 181 KRPVEVAGDQQDSRWFISKDAIVSGLGLLGIKQGGTEAALSKPRRKRVVRKKVAST 236
>Os04g0524400 Conserved hypothetical protein
Length = 399
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 85/164 (51%), Gaps = 16/164 (9%)
Query: 3 NALTASCCNVMVLGLLAPCRSYG----STSRFD-FQNAIEKLPNNIFEKSYPLRQFDLQK 57
+ L ++ ++GLLAP +G ST F F LP+++FE P +F +Q+
Sbjct: 220 DLLVGVVVDIALVGLLAPYVRFGKASASTGPFGRFNRMAGSLPSSVFEAERPGCRFTVQQ 279
Query: 58 RISAFFYKAAELSLLGVVAGSI-QGGLSKALSARKERRLS---VTIPSVSTNALGYGAFL 113
RI FFYK +G V G I QG + ++A++ + S + +P + +A +G FL
Sbjct: 280 RIGTFFYKGVLYGSVGFVCGIIGQGIANMIMTAKRSVKKSDEDIPVPPLIKSAALWGVFL 339
Query: 114 GLYANLRYQLLCGLDQY-----MVRRFDVLGVAIFFSTALRLTN 152
+ +N RYQ++ GL++ + +R V VA+ F+ +R N
Sbjct: 340 AVSSNTRYQIINGLERVVETSPIAKR--VPPVAMAFTVGVRFAN 381
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.136 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,652,565
Number of extensions: 246210
Number of successful extensions: 621
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 620
Number of HSP's successfully gapped: 3
Length of query: 236
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 138
Effective length of database: 11,918,829
Effective search space: 1644798402
Effective search space used: 1644798402
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)