BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0483600 Os04g0483600|AK073227
(662 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0483600 Galactose oxidase, central domain containing p... 1131 0.0
Os12g0538800 Galactose oxidase, central domain containing p... 99 1e-20
Os09g0249000 Galactose oxidase, central domain containing p... 90 6e-18
Os02g0822800 Galactose oxidase, central domain containing p... 90 6e-18
Os11g0657000 Galactose oxidase, central domain containing p... 82 9e-16
Os03g0835800 Galactose oxidase, central domain containing p... 81 3e-15
Os12g0540800 Galactose oxidase, central domain containing p... 80 5e-15
Os01g0300900 Galactose oxidase, central domain containing p... 74 4e-13
Os03g0835600 Acyl-coA-binding protein, ACBP family protein 73 8e-13
>Os04g0483600 Galactose oxidase, central domain containing protein
Length = 662
Score = 1131 bits (2926), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 557/590 (94%), Positives = 557/590 (94%)
Query: 38 DDIDAILRSIQKEEAKKKEVHIDENVPAPSPRSNCSLTINPLKDTELVLYGGEFYNGSKT 97
DDIDAILRSIQKEEAKKKEVHIDENVPAPSPRSNCSLTINPLKDTELVLYGGEFYNGSKT
Sbjct: 38 DDIDAILRSIQKEEAKKKEVHIDENVPAPSPRSNCSLTINPLKDTELVLYGGEFYNGSKT 97
Query: 98 FVYGDLYRYDVEKNEWKLVSSPNSPPPRSAHQTVAWKNNIYMFGGEFTSPNQERFHHYKD 157
FVYGDLYRYDVEKNEWKLVSSPNSPPPRSAHQTVAWKNNIYMFGGEFTSPNQERFHHYKD
Sbjct: 98 FVYGDLYRYDVEKNEWKLVSSPNSPPPRSAHQTVAWKNNIYMFGGEFTSPNQERFHHYKD 157
Query: 158 FWSLDLKTNQWEQILAKGCPSARSGHRMVLYKHKIVLFGGFYDTLREVRYYNDLHVFDLD 217
FWSLDLKTNQWEQILAKGCPSARSGHRMVLYKHKIVLFGGFYDTLREVRYYNDLHVFDLD
Sbjct: 158 FWSLDLKTNQWEQILAKGCPSARSGHRMVLYKHKIVLFGGFYDTLREVRYYNDLHVFDLD 217
Query: 218 NFKWEEIKPRPGCLWPSPRSGFQLMVYQDQIYLYGGYFKEVVSSDKSASEKGTVHADMWT 277
NFKWEEIKPRPGCLWPSPRSGFQLMVYQDQIYLYGGYFKEVVSSDKSASEKGTVHADMWT
Sbjct: 218 NFKWEEIKPRPGCLWPSPRSGFQLMVYQDQIYLYGGYFKEVVSSDKSASEKGTVHADMWT 277
Query: 278 LDPRTWEWNKVKKTGMPPGPRAGFSMCVHKKRAVLFGGVVDMEIEGDVIMSMFMNELYGF 337
LDPRTWEWNKVKKTGMPPGPRAGFSMCVHKKRAVLFGGVVDMEIEGDVIMSMFMNELYGF
Sbjct: 278 LDPRTWEWNKVKKTGMPPGPRAGFSMCVHKKRAVLFGGVVDMEIEGDVIMSMFMNELYGF 337
Query: 338 QLDNHRWYPLELRKDKPAKNKTKDIKRKEPSNNVEDNLGNEEDEIMEDSETTGGQSEVHG 397
QLDNHRWYPLELRKDKPAKNKTKDIKRKEPSNNVEDNLGNEEDEIMEDSETTGGQSEVHG
Sbjct: 338 QLDNHRWYPLELRKDKPAKNKTKDIKRKEPSNNVEDNLGNEEDEIMEDSETTGGQSEVHG 397
Query: 398 VSNHLTKSLTLNKAGSGNSSDILSDSTTQEVLPEAVKPGGRINACLAVGKDTLYLYGGMM 457
VSNHLTKSLTLNKAGSGNSSDILSDSTTQEVLPEAVKPGGRINACLAVGKDTLYLYGGMM
Sbjct: 398 VSNHLTKSLTLNKAGSGNSSDILSDSTTQEVLPEAVKPGGRINACLAVGKDTLYLYGGMM 457
Query: 458 ELKDREITLDDMYSLNLSKLDEWKCIIPASESEWLEIXXXXXXXXXXXXXXXXXXXXXAN 517
ELKDREITLDDMYSLNLSKLDEWKCIIPASESEWLEI AN
Sbjct: 458 ELKDREITLDDMYSLNLSKLDEWKCIIPASESEWLEISEDEDDEDDDDDDNENDSEDDAN 517
Query: 518 QTXXXXXXXXXXXXKNVDMSTAVSLIKGERKNLRRKEKRARIEQIRVMLGLSDSQRTPMP 577
QT KNVDMSTAVSLIKGERKNLRRKEKRARIEQIRVMLGLSDSQRTPMP
Sbjct: 518 QTDEDDEESDEDAEKNVDMSTAVSLIKGERKNLRRKEKRARIEQIRVMLGLSDSQRTPMP 577
Query: 578 GESLKDFYKRTDMYWQMAAYEHTQHTGKELRKDGFDLAETRYKELKPILD 627
GESLKDFYKRTDMYWQMAAYEHTQHTGKELRKDGFDLAETRYKELKPILD
Sbjct: 578 GESLKDFYKRTDMYWQMAAYEHTQHTGKELRKDGFDLAETRYKELKPILD 627
>Os12g0538800 Galactose oxidase, central domain containing protein
Length = 698
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 126/261 (48%), Gaps = 40/261 (15%)
Query: 66 PSPRSNCSLTINPLKDTELVLYGGEFYNGSKTFVYGDLYRYDVEKNEWKLVS-----SPN 120
PSPR + L +++V++GG+ S + D ++EK W V+ SPN
Sbjct: 90 PSPRFAHAAA---LVGSKMVVFGGD----SGDQLLDDTKILNLEKLTWDSVAPKVRPSPN 142
Query: 121 SPPPR----SAHQTVAWKNNIYMFGGEFTSPNQERFHHYKDFWSLDLKTNQWEQILAKG- 175
P + H V W N++ + GG+ T P +R W+ +++T W + AKG
Sbjct: 143 RRPSKLPACKGHCLVQWGNSVILVGGK-TEPASDRL----AVWTFNMETEVWSLMEAKGD 197
Query: 176 CPSARSGHRMVLYKHKIVLFGGFYDTLREVRYYNDLHVFDLDNFKWEEIKPRPGCLWPSP 235
P+ARSGH + ++LFGG DT + R+ DLH+FDL + W + + PSP
Sbjct: 198 IPAARSGHTVTRAGATLILFGG-EDTKGKKRH--DLHMFDLKSSTWLPLNYKGS--GPSP 252
Query: 236 RSGFQLMVYQDQIYL-YGGYFKEVVSSDKSASEKGTVHADMWTLDPRTWEWNKVKKTGMP 294
RS +Y+D+I L +GG+ K D+++LD T W++VK G
Sbjct: 253 RSNHVAALYEDRILLIFGGH------------SKSKTLNDLFSLDFETMVWSRVKIHGPH 300
Query: 295 PGPRAGFSMCVHKKRAVLFGG 315
P PRAG S + + + GG
Sbjct: 301 PTPRAGCSGVLCGTKWYIAGG 321
>Os09g0249000 Galactose oxidase, central domain containing protein
Length = 332
Score = 89.7 bits (221), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 88/311 (28%), Positives = 131/311 (42%), Gaps = 46/311 (14%)
Query: 52 AKKKEVHIDENVPAPSPRSNCSLTINPLKDTELVLYGGEFYNGSKTFVYGDLYRYDVEKN 111
A V +++ P RS+ ++T L +GGEF + V +Y +D++
Sbjct: 4 AAGTWVKLEQKGDGPGARSSHAIT---LVGGTAYAFGGEFT--PRVPVDNAMYAFDLKSQ 58
Query: 112 EWK-LVSSPNSPPPRSAHQTVAWKNNIYMFGGEFTSPNQERFHHYKDFWSLDLKTNQWEQ 170
W L +S + PPPR + +YMFGG +QE + +S D TN+W
Sbjct: 59 CWSALDASGDVPPPRVGVTMASVGATVYMFGGR----DQEH-KELNELYSFDTATNRW-T 112
Query: 171 ILAKGC---PSARSGHRMVL---YKHKIVLFGGFYDTLREVRYYNDLHVFDLDNFKWEEI 224
+L+ G P RS H MV K+ +FGG D R NDL +D+ +WE +
Sbjct: 113 LLSSGAGDGPPHRSYHSMVADAAGGGKVYVFGGCGDAGR----LNDLWAYDVAAGRWEAL 168
Query: 225 KPRPG--CLWPSPRSGFQLMVYQDQIYLYGGYFKEVVSSDKSASEKGTVHADMWTLDPRT 282
P PG C PR G L V ++++ G+ E + D+ DP T
Sbjct: 169 -PSPGEAC---KPRGGPGLAVAGGKVWVVYGFSGEELD-------------DVHCYDPGT 211
Query: 283 WEWNKVKKTGMP-----PGPRAGFSMCVHKKRAVLFGGVVDMEIEGDVIMSMFMNELYGF 337
W+ V+ TG P PR+ F K V+FGG VD G + F E +
Sbjct: 212 GAWSTVETTGGGGGGDKPSPRSVFCAAGIGKHVVVFGGEVDPSDLGHLGAGKFSAEAFAL 271
Query: 338 QLDNHRWYPLE 348
+ W L+
Sbjct: 272 DTETGAWARLD 282
>Os02g0822800 Galactose oxidase, central domain containing protein
Length = 519
Score = 89.7 bits (221), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 94/209 (44%), Gaps = 23/209 (11%)
Query: 121 SPPPRSAHQTVAWKNNIYMFGGEFTSPNQERFHHYKDFWSLDLKTNQWEQILAKG-CPSA 179
S P + H V WK I + G + + W ++++TN W + G P +
Sbjct: 94 SFPALAGHSLVNWKKYIVVVAGNTRTSTSNKV----SVWLINVETNSWSSVDTYGKVPIS 149
Query: 180 RSGHRMVLYKHKIVLFGGFYDTLREVRYYNDLHVFDLDNFKWEEIKPRPGCLWPSPRSGF 239
R G + L ++++FGG D R R NDLH+ DL+ WEE+K G P+PR
Sbjct: 150 RGGQSVSLVGSRLIMFGG-EDNKR--RLLNDLHILDLETMMWEEVKTGKGG--PAPRYDH 204
Query: 240 QLMVYQDQ-IYLYGGYFKEVVSSDKSASEKGTVHADMWTLDPRTWEWNKVKKTGMPPGPR 298
VY DQ + ++GG S T +D++ LD +T EW++ G PR
Sbjct: 205 SAAVYADQYLLIFGG------------SSHSTCFSDIYLLDLQTMEWSQPDTQGAHINPR 252
Query: 299 AGFSMCVHKKRAVLFGGVVDMEIEGDVIM 327
+G + + + + GG + D IM
Sbjct: 253 SGHAGTMIDENWYIVGGGDNASGSTDTIM 281
>Os11g0657000 Galactose oxidase, central domain containing protein
Length = 530
Score = 82.4 bits (202), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 90/187 (48%), Gaps = 24/187 (12%)
Query: 131 VAWKNNIYMFGGEFTSPNQERFHHYKDFWSLDLKTNQWEQILAKG-CPSARSGHRMVLYK 189
V W N+ + GG+ T P +R WS + +T+ W I KG P ARSGH ++
Sbjct: 1 VPWGKNVILVGGK-TDPPSDRI----SVWSFNTETDLWSYIEVKGDIPVARSGHTVIRAG 55
Query: 190 HKIVLFGGFYDTLREVRYYNDLHVFDLDNFKWEEIKPRPGCLWPSPRSGFQLMVYQDQIY 249
++LFGG +++ +DLH+FDL + W + + PSPRS +Y D+I
Sbjct: 56 PVLILFGGEDGKGKKL---HDLHMFDLKSSTWLPLNYKGA--GPSPRSNHVAALYDDRIL 110
Query: 250 L-YGGYFKEVVSSDKSASEKGTVHADMWTLDPRTWEWNKVKKTGMPPGPRAGFSMCVHKK 308
L +GG K +D VHA LD T W++VK G P PRAG +
Sbjct: 111 LIFGGQSKSKTLND--------VHA----LDFETMVWSRVKTHGHHPSPRAGCCGALCGT 158
Query: 309 RAVLFGG 315
+ + GG
Sbjct: 159 KWYIAGG 165
>Os03g0835800 Galactose oxidase, central domain containing protein
Length = 476
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 111/265 (41%), Gaps = 44/265 (16%)
Query: 66 PSPRSNCSLTINPLKDTELVLYGGEFYNGSKTFVYGDLYRYDVEKNEWKLVSSPNS---- 121
P+PRS T + +++V++GG K F+ D+ YDVE W S
Sbjct: 25 PAPRSG--HTAVSIGKSKVVVFGG---FADKRFL-SDIAVYDVENRIWYTPECNGSGSDG 78
Query: 122 ---PPPRSAHQTVAWKNNIYMFGGEFTSPNQERFHHYKDFWSLDLKTNQWEQILAKG-CP 177
P PR+ H + N+++FGG + DFW LD QW ++ G P
Sbjct: 79 QAGPSPRAFHVAIVIDCNMFIFGG------RSGGKRLGDFWMLDTDIWQWSELTGFGDLP 132
Query: 178 SARS-GHRMVLYKHKIVLFGGFYDTLREVRYYNDLHVFDLDNFKWEEIKPRPGCLWPSPR 236
S R + KIV++GG+ ++ +D+++ D + +W E+ P PR
Sbjct: 133 SPREFAAASAIGNRKIVMYGGWDGK----KWLSDVYIMDTMSLEWTELSVTGSV--PPPR 186
Query: 237 SGFQLMVYQDQIYLYGGYFKEVVSSDKSASEKGTVHADMWTL------DPRTWEWNKVKK 290
G + + ++ ++GG G + D+W L D T W ++K
Sbjct: 187 CGHSATMIEKRLLVFGGR-----------GGAGPIMGDLWALKGVTEEDNETPGWTQLKL 235
Query: 291 TGMPPGPRAGFSMCVHKKRAVLFGG 315
G P PR G S+ +LFGG
Sbjct: 236 PGQSPSPRCGHSVTSGGPYLLLFGG 260
>Os12g0540800 Galactose oxidase, central domain containing protein
Length = 527
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 73/266 (27%), Positives = 109/266 (40%), Gaps = 43/266 (16%)
Query: 64 PAPSPRSNCSLTINPLKDTELVLYGGEFYNGSKTFVYGDLYRYDVEKNEW-KL------- 115
P P PR + + K + ++GG +NG GD+ D + W KL
Sbjct: 57 PLPKPRYKHAAAVVQEK---MYVFGGN-HNGR---YLGDMQVLDFKCLSWSKLEAKIQSE 109
Query: 116 ----VSSPNSPPPRSAHQTVAWKNNIYMFGGEFTSPNQERFHHYKDFWSLDLKTNQWEQI 171
++ S PP + H V W N I G P + K+F D +T W +
Sbjct: 110 EPSDLTGTASLPPCAGHALVPWGNKILCLAGHTREPTESL--SVKEF---DPQTCTWSTL 164
Query: 172 LAKG-CPSARSGHRMVLYKHKIVLFGGFYDTLREVRYYNDLHVFDLDNFKWEEIKPRPGC 230
G PS+ G + L +V+FGG D NDLHV DL+ W+E +
Sbjct: 165 RTYGRSPSSCGGQSVTLVGGTLVVFGGEGDGRS---LLNDLHVLDLETMTWDEFETT--G 219
Query: 231 LWPSPRSGFQLMVYQDQ-IYLYGGYFKEVVSSDKSASEKGTVHADMWTLDPRTWEWNKVK 289
PSPRS Y D+ + ++GG T +D+ LD +T EW++ +
Sbjct: 220 TPPSPRSEHAAACYADRYLLIFGG------------GSHSTCFSDLHLLDMQTMEWSRPE 267
Query: 290 KTGMPPGPRAGFSMCVHKKRAVLFGG 315
G+ P PRAG + + + GG
Sbjct: 268 HQGITPEPRAGHAGVTVGENWFITGG 293
>Os01g0300900 Galactose oxidase, central domain containing protein
Length = 624
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 106/261 (40%), Gaps = 38/261 (14%)
Query: 100 YGDLYRYDVEKNEWK-LVSSPNSPPPRSAHQTVAWKNNIYMFGGEFTSPNQERFHHYKDF 158
+ D+ ++E W L ++ P R +H + + +FGG S D
Sbjct: 46 FSDVLTLNLETMAWSSLATTGARPGTRDSHGAALVGHRMMVFGGTNGSKK------VNDL 99
Query: 159 WSLDLKTNQWEQILAKGCP-SARSGHRMVLYKH--KIVLFGGFYDTLREVRYYNDLHVFD 215
LDL+T +W + KG P S R H + ++V+FGG + E Y ND+HV D
Sbjct: 100 HVLDLRTKEWTKPPCKGTPPSPRESHTVTACGGCDRLVVFGGSGEG--EGNYLNDVHVLD 157
Query: 216 LDNFKWE--EIKPRPGCLWPSPRSGFQLMVYQDQIYLYGGYFKEVVSSDKSASEKGTVHA 273
+ W E+K G + P+PR + ++ +YGG + H
Sbjct: 158 VATMTWSSPEVK---GDVVPAPRDSHGAVAVGSRLVVYGGDCGD------------RYHG 202
Query: 274 DMWTLDPRTWEWNKVKKTGMPPGPRAGFSMCVHKKRAVLFGGVVDMEIEGDVIMSMFMNE 333
++ LD W++ G PG RAG + + + GGV D + + ++
Sbjct: 203 EVDVLDMDAMAWSRFAVKGASPGVRAGHAAVGVGSKVYVIGGVGDKQ---------YYSD 253
Query: 334 LYGFQLDNHRWYPLELRKDKP 354
+ + N W LE+ +P
Sbjct: 254 AWILDVANRSWTQLEICGQQP 274
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 87/209 (41%), Gaps = 26/209 (12%)
Query: 121 SPPPRSAHQTVAWKNNIYMFGGEFTSPNQERFHHYKDFWSLDLKTNQWEQILAKGC-PSA 179
+PP R H ++ +Y+FGG H+ D +L+L+T W + G P
Sbjct: 18 NPPERWGHSACFFEGVVYVFGGCCGG------LHFSDVLTLNLETMAWSSLATTGARPGT 71
Query: 180 RSGHRMVLYKHKIVLFGGFYDTLREVRYYNDLHVFDLDNFKWEEIKPRPGCLWPSPRSGF 239
R H L H++++FGG + + NDLHV DL +W KP PSPR
Sbjct: 72 RDSHGAALVGHRMMVFGGTNGS----KKVNDLHVLDLRTKEW--TKPPCKGTPPSPRESH 125
Query: 240 QLMVYQ--DQIYLYGGYFKEVVSSDKSASEKGTVHADMWTLDPRTWEWNKVKKTG-MPPG 296
+ D++ ++GG S +G D+ LD T W+ + G + P
Sbjct: 126 TVTACGGCDRLVVFGG----------SGEGEGNYLNDVHVLDVATMTWSSPEVKGDVVPA 175
Query: 297 PRAGFSMCVHKKRAVLFGGVVDMEIEGDV 325
PR R V++GG G+V
Sbjct: 176 PRDSHGAVAVGSRLVVYGGDCGDRYHGEV 204
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 107/268 (39%), Gaps = 39/268 (14%)
Query: 79 LKDTELVLYGGEFYNGSKTFVYGDLYRYDVEKNEWKLVSSPNSPP-PRSAHQTVAWK--N 135
L ++++GG NGSK DL+ D+ EW +PP PR +H A +
Sbjct: 79 LVGHRMMVFGGT--NGSKKV--NDLHVLDLRTKEWTKPPCKGTPPSPRESHTVTACGGCD 134
Query: 136 NIYMFGGEFTSPNQERFHHYKDFWSLDLKTNQWEQILAKG--CPSARSGHRMVLYKHKIV 193
+ +FGG + ++ D LD+ T W KG P+ R H V ++V
Sbjct: 135 RLVVFGGS----GEGEGNYLNDVHVLDVATMTWSSPEVKGDVVPAPRDSHGAVAVGSRLV 190
Query: 194 LFGGFYDTLREVRYYNDLHVFDLDNFKWEEIKPRPGCLWPSPRSGFQLMVYQDQIYLYGG 253
++GG RY+ ++ V D+D W + P R+G + ++Y+ GG
Sbjct: 191 VYGGDCGD----RYHGEVDVLDMDAMAWSRFAVKGAS--PGVRAGHAAVGVGSKVYVIGG 244
Query: 254 YFKEVVSSDKSASEKGTVHADMWTLDPRTWEWNKVKKTGMPPGPRAGFSMCVHKKRAVLF 313
DK ++D W LD W +++ G P R S V ++
Sbjct: 245 V------GDKQ------YYSDAWILDVANRSWTQLEICGQQPQGRFSHSAVVLNTDIAIY 292
Query: 314 GGVVDMEIEGDVIMSMFMNELYGFQLDN 341
GG + E +NEL QL +
Sbjct: 293 GGCGEDERP--------LNELLILQLGS 312
>Os03g0835600 Acyl-coA-binding protein, ACBP family protein
Length = 655
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 83/192 (43%), Gaps = 25/192 (13%)
Query: 126 SAHQTVAWKNNIYMFGGEFTSPNQERFHHYKDFWSLDLKTNQWEQILAKG-CPSARSGHR 184
+ H ++W N + G P++ K+F D T W + G P +R G
Sbjct: 244 AGHSLISWGNKFFSVAGHTKDPSENIT--VKEF---DPHTCTWSIVKTYGKPPVSRGGQS 298
Query: 185 MVLYKHKIVLFGGFYDTLREVRYYNDLHVFDLDNFKWEEIKPRPGCLWPSPRSGFQLMVY 244
+ L +VLFGG D R + NDLH+ DL+ W+++ P PRS +
Sbjct: 299 VTLVGTTLVLFGG-EDAKRCL--LNDLHILDLETMTWDDVD---AIGTPPPRSDHAAACH 352
Query: 245 QDQ-IYLYGGYFKEVVSSDKSASEKGTVHADMWTLDPRTWEWNKVKKTGMPPGPRAGFSM 303
D+ + ++GG T D+ LD +T EW++ K+ G+ P PRAG +
Sbjct: 353 ADRYLLIFGG------------GSHATCFNDLHVLDLQTMEWSRPKQQGLAPSPRAGHAG 400
Query: 304 CVHKKRAVLFGG 315
+ + GG
Sbjct: 401 ATVGENWYIVGG 412
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.134 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 21,552,978
Number of extensions: 966830
Number of successful extensions: 2807
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 2722
Number of HSP's successfully gapped: 11
Length of query: 662
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 555
Effective length of database: 11,448,903
Effective search space: 6354141165
Effective search space used: 6354141165
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 159 (65.9 bits)