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Os12g0540800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Galactose oxidase, central domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.1 (0.0146) R2 : 0.0777
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.19 (0.0307) R2dN8 : 0.1 R2N8 : 0.0777
σ : 0.275
deviance : 34.69
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
21.01 0.215 10.1 -0.621 0.322 0.197 -0.299 -1.38 0.0383 3.11 19.16 1880 -- --
22.8 0.222 10.1 -0.522 0.305 0.605 -0.273 -- 0.0544 2.89 18.07 3091 -- --
21.29 0.215 10.1 -0.619 0.319 0.189 -- -1.37 0.0398 3.14 19.1 1915 -- --
22.53 0.221 10.1 -0.561 0.308 0.716 -- -- 0.0696 3.14 16.4 6679 -- --
26.74 0.241 10.1 -0.637 -- 0.147 -- -1.38 0.0412 -- 19.2 2596 -- --
26.93 0.243 10.1 -0.276 0.319 -- -0.291 -- 0.152 3.11 -- -- -- --
27.21 0.244 10.1 -0.269 0.318 -- -- -- 0.154 3.13 -- -- -- --
27.88 0.246 10.1 -0.568 -- 0.752 -- -- 0.0731 -- 16.4 6834 -- --
27.66 0.245 10.1 -- 0.303 0.37 -- -- 0.156 3.05 17.28 3093 -- --
32.96 0.268 10.1 -0.256 -- -- -- -- 0.162 -- -- -- -- --
29.12 0.252 10.1 -- 0.312 -- -- -- 0.184 3.12 -- -- -- --
32.73 0.266 10.1 -- -- 0.409 -- -- 0.158 -- 17.37 2579 -- --
34.69 0.275 10.1 -- -- -- -- -- 0.19 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 20.97 radiation 10 4320 > th dose independent rect. 5 2
13 20.98 radiation 10 4320 > th dose dependent rect. 5 2
26 21.01 humidity 90 14400 > th dose dependent rect. 3 13
29 21.03 humidity 90 14400 > th dose dependent rect. 2 17
39 21.09 humidity 90 14400 > th dose dependent sin 3 NA
41 21.11 humidity 50 43200 < th dose dependent rect. 5 4
52 21.15 humidity 50 43200 < th dose dependent rect. 20 13
79 21.23 humidity 90 14400 > th dose dependent rect. 4 6
118 21.27 wind 7 43200 > th dose dependent rect. 3 10
132 21.29 temperature 20 90 > th dose independent rect. 19 22
140 21.30 wind 9 43200 > th dose independent rect. 3 10
141 21.30 wind 9 43200 < th dose independent rect. 3 10
142 21.30 humidity 90 14400 > th dose dependent no NA NA
143 21.30 wind 3 43200 > th dose dependent rect. 23 8
147 21.30 humidity 90 14400 > th dose dependent rect. 5 23
149 21.31 wind 9 43200 < th dose independent sin 6 NA
150 21.31 temperature 20 90 > th dose independent rect. 19 8
153 21.31 humidity 90 14400 > th dose dependent rect. 5 4
158 21.31 humidity 90 14400 > th dose dependent rect. 16 23
159 21.31 humidity 90 14400 > th dose dependent rect. 18 23
167 21.32 humidity 90 14400 > th dose dependent rect. 11 23
179 21.33 wind 7 43200 > th dose dependent rect. 23 15
186 21.33 humidity 90 14400 > th dose dependent rect. 9 23
188 21.34 wind 9 43200 > th dose independent sin 6 NA
192 21.34 wind 3 43200 > th dose dependent rect. 2 5
217 21.36 temperature 20 10 > th dose independent rect. 20 8
224 21.37 humidity 90 14400 > th dose independent rect. 21 17
225 21.37 wind 3 43200 > th dose dependent rect. 4 3
233 21.38 humidity 90 14400 < th dose independent rect. 10 5
248 21.39 temperature 15 4320 < th dose dependent rect. 23 5
257 21.40 radiation 1 1440 < th dose independent rect. 13 1
261 21.40 temperature 20 14400 > th dose independent rect. 4 18
262 21.40 temperature 20 14400 < th dose independent rect. 4 18
263 21.40 wind 7 43200 > th dose dependent sin 6 NA
264 21.40 radiation 1 1440 < th dose dependent rect. 13 1
271 21.41 radiation 1 1440 > th dose independent rect. 13 1
272 21.41 radiation 30 4320 < th dose independent rect. 7 1
273 21.41 radiation 30 4320 < th dose independent rect. 21 11
279 21.41 wind 7 43200 > th dose dependent rect. 8 5
298 21.42 humidity 90 14400 > th dose independent rect. 18 20
299 21.42 humidity 90 14400 > th dose independent rect. 21 22
307 21.43 humidity 90 14400 > th dose independent sin 5 NA
308 21.43 temperature 20 4320 > th dose independent rect. 18 3
323 21.43 temperature 15 4320 < th dose dependent rect. 24 3
331 21.44 wind 9 43200 > th dose independent rect. 10 2
332 21.44 wind 9 43200 > th dose independent rect. 8 5
350 21.44 wind 7 43200 > th dose dependent rect. 10 1
382 21.46 humidity 90 14400 < th dose independent rect. 11 3
404 21.46 humidity 90 14400 > th dose independent rect. 5 23
409 21.46 humidity 90 14400 > th dose dependent rect. 9 6
416 21.46 temperature 15 4320 < th dose dependent rect. 23 17
420 21.47 humidity 80 14400 > th dose independent rect. 10 1
421 21.47 humidity 90 14400 > th dose independent rect. 12 2
438 21.47 humidity 90 14400 > th dose independent rect. 9 19
442 21.47 temperature 20 14400 > th dose independent rect. 7 20
461 21.47 temperature 15 4320 < th dose dependent rect. 23 11
463 21.47 temperature 15 4320 < th dose dependent rect. 23 14
470 21.48 humidity 90 14400 > th dose independent no NA NA
473 21.48 temperature 20 4320 < th dose independent rect. 18 3
475 21.48 radiation 30 4320 < th dose independent rect. 2 6
490 21.48 temperature 20 14400 < th dose independent rect. 7 20
522 21.49 wind 9 43200 < th dose independent rect. 7 6
565 21.50 temperature 20 14400 > th dose independent sin 23 NA
592 21.50 humidity 90 14400 > th dose independent rect. 2 23
604 21.51 humidity 90 14400 > th dose independent rect. 2 9
610 21.51 temperature 20 90 > th dose independent rect. 20 15
632 21.51 temperature 25 14400 < th dose dependent rect. 7 8
679 21.53 temperature 20 14400 > th dose independent no NA NA
680 21.53 temperature 20 14400 < th dose independent sin 22 NA
718 21.54 temperature 20 14400 < th dose independent no NA NA
719 21.54 humidity 90 14400 > th dose independent rect. 21 3
738 21.54 temperature 20 14400 > th dose independent rect. 13 23
746 21.54 temperature 15 4320 < th dose dependent sin 8 NA
794 21.55 temperature 20 14400 > th dose independent rect. 10 23
797 21.55 temperature 20 14400 < th dose independent rect. 14 23
852 21.56 temperature 20 14400 < th dose independent rect. 10 23
860 21.56 temperature 25 14400 < th dose dependent rect. 11 4
879 21.56 temperature 20 90 < th dose dependent rect. 13 22
881 21.57 temperature 20 14400 < th dose independent sin 17 NA
883 21.57 wind 7 43200 < th dose independent rect. 10 1
885 21.57 wind 5 43200 < th dose independent rect. 4 3
888 21.57 humidity 50 43200 < th dose independent rect. 6 3
924 21.57 wind 3 43200 > th dose dependent sin 8 NA
956 21.58 humidity 90 14400 > th dose independent rect. 22 1
990 21.58 temperature 20 90 < th dose dependent sin 10 NA
991 21.58 temperature 25 14400 < th dose dependent rect. 14 1