Os04g0483600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Galactose oxidase, central domain containing protein.
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Os04g0483600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Galactose oxidase, central domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 77.61 | 0.414 | 10.2 | -0.173 | 1.56 | 0.771 | 0.442 | -0.344 | 0.0165 | 17.3 | 20.51 | 1217 | -- | -- |
| 77.9 | 0.411 | 10.2 | -0.126 | 1.56 | 0.831 | 0.41 | -- | 0.0224 | 17.3 | 20.5 | 1216 | -- | -- |
| 78.09 | 0.412 | 10.2 | -0.184 | 1.56 | 0.776 | -- | -0.38 | 0.0157 | 17.3 | 20.51 | 1216 | -- | -- |
| 78.42 | 0.412 | 10.2 | -0.119 | 1.56 | 0.828 | -- | -- | 0.0267 | 17.3 | 20.5 | 1215 | -- | -- |
| 192.53 | 0.646 | 10.2 | -0.0916 | -- | 0.839 | -- | -0.00989 | -0.00294 | -- | 20.7 | 344 | -- | -- |
| 93.86 | 0.454 | 10.2 | 0.227 | 1.53 | -- | 0.645 | -- | 0.215 | 17.4 | -- | -- | -- | -- |
| 94.9 | 0.456 | 10.2 | 0.225 | 1.53 | -- | -- | -- | 0.218 | 17.4 | -- | -- | -- | -- |
| 124.81 | 0.52 | 10.2 | -0.121 | -- | 1.12 | -- | -- | -0.175 | -- | 26.2 | 283 | -- | -- |
| 78.73 | 0.413 | 10.2 | -- | 1.55 | 0.79 | -- | -- | 0.0369 | 17.3 | 20.6 | 1213 | -- | -- |
| 217.34 | 0.689 | 10.1 | 0.174 | -- | -- | -- | -- | 0.18 | -- | -- | -- | -- | -- |
| 96.23 | 0.459 | 10.2 | -- | 1.53 | -- | -- | -- | 0.193 | 17.4 | -- | -- | -- | -- |
| 124.94 | 0.521 | 10.2 | -- | -- | 1.14 | -- | -- | -0.114 | -- | 26.34 | 301 | -- | -- |
| 218.13 | 0.689 | 10.1 | -- | -- | -- | -- | -- | 0.161 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 68.34 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 8 | 69.95 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 6 |
| 18 | 70.80 | temperature | 10 | 90 | > th | dose dependent | rect. | 8 | 22 |
| 25 | 71.23 | temperature | 20 | 270 | > th | dose dependent | rect. | 8 | 4 |
| 33 | 71.53 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 54 | 72.32 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 14 |
| 55 | 72.33 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 64 | 72.48 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 14 |
| 67 | 72.59 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 12 |
| 69 | 72.62 | temperature | 30 | 90 | < th | dose dependent | sin | 1 | NA |
| 161 | 73.95 | temperature | 25 | 90 | > th | dose independent | rect. | 9 | 6 |
| 171 | 74.04 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 173 | 74.05 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 14 |
| 175 | 74.07 | temperature | 15 | 90 | > th | dose dependent | sin | 2 | NA |
| 218 | 74.44 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 9 |
| 222 | 74.47 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 4 |
| 291 | 75.01 | temperature | 20 | 90 | > th | dose dependent | rect. | 20 | 19 |
| 586 | 76.77 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 20 |
| 763 | 77.57 | temperature | 10 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 777 | 77.61 | temperature | 15 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 839 | 77.89 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 8 |
| 955 | 78.43 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 2 |
| 958 | 78.45 | temperature | 20 | 30 | > th | dose independent | rect. | 9 | 19 |
| 968 | 78.48 | temperature | 20 | 270 | > th | dose independent | rect. | 7 | 20 |
| 996 | 78.58 | temperature | 20 | 1440 | > th | dose independent | rect. | 17 | 14 |