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Os01g0300900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Galactose oxidase, central domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.05 (0.0905) R2 : 0.615
β1 : -3.1 (0.673) R2dD : 0.278 R2D : -0.385
β2 : 2.69 (0.125) R2dC : 0.4 R2C : 0.345
β3 : 2.99 (0.401) R2dE : 0.492 R2E : -0.0134
β4 : 4.76 (0.57) R2dD*C : 0.0592 R2D*C : 0.0164
β5 : -14.5 (3.41) R2dD*E : 0.335 R2D*E : -0.54
γ1 : -0.531 (0.116) R2dN8 : 0.031 R2N8 : -0.0069
σ : 0.897
deviance : 364.37
__
_____
C
peak time of C : 5.61
E
wheather : temperature
threshold : 28.83
memory length : 1215
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
364.37 0.897 8.05 -3.1 2.69 2.99 4.76 -14.5 -0.531 5.61 28.83 1215 -- --
394.38 0.925 7.89 -1.07 2.72 2.14 4.9 -- -1.06 5.41 5.843 7809 -- --
419.09 0.953 8.01 -2.7 2.72 2.72 -- -11.5 -0.626 5.63 28.31 1224 -- --
453.09 0.991 7.9 -1.02 2.78 2.13 -- -- -1.08 5.41 6.741 7801 -- --
790.68 1.31 8 -1.8 -- 2.32 -- -5.29 -0.91 -- 25.47 1251 -- --
466.49 1.01 7.76 0.0554 2.75 -- 4.9 -- -0.467 5.32 -- -- -- --
526.34 1.07 7.77 0.0625 2.78 -- -- -- -0.49 5.3 -- -- -- --
796.14 1.31 7.84 -0.417 -- 1.84 -- -- -0.498 -- 26.11 1274 -- --
472.11 1.01 7.84 -- 2.72 1.52 -- -- -0.797 5.41 12.8 6849 -- --
929.45 1.42 7.81 0.158 -- -- -- -- -0.421 -- -- -- -- --
526.44 1.07 7.77 -- 2.78 -- -- -- -0.497 5.3 -- -- -- --
800.04 1.32 7.81 -- -- 1.69 -- -- -0.46 -- 26.26 1274 -- --
930.11 1.42 7.81 -- -- -- -- -- -0.438 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 362.11 radiation 30 14400 < th dose independent rect. 16 13
5 363.44 radiation 30 14400 < th dose independent rect. 16 1
6 364.00 radiation 30 14400 < th dose independent rect. 16 9
9 364.39 radiation 30 14400 < th dose independent rect. 16 5
13 365.89 radiation 10 14400 > th dose independent rect. 5 1
27 366.88 humidity 70 720 > th dose independent rect. 15 12
28 367.04 humidity 70 720 > th dose independent rect. 14 14
31 368.05 wind 9 14400 > th dose independent rect. 16 1
33 368.49 humidity 70 720 > th dose independent sin 13 NA
35 369.18 wind 5 14400 > th dose independent rect. 11 1
36 369.40 wind 5 14400 < th dose independent rect. 11 1
39 370.15 radiation 30 1440 < th dose dependent rect. 18 11
42 370.72 wind 9 14400 > th dose dependent rect. 16 1
44 370.84 radiation 1 720 > th dose independent rect. 10 20
48 371.63 radiation 30 4320 < th dose independent rect. 23 9
50 371.87 humidity 70 720 > th dose independent rect. 15 5
52 372.03 radiation 40 14400 > th dose dependent rect. 15 18
58 372.70 radiation 30 4320 < th dose independent rect. 20 12
61 373.04 radiation 30 4320 < th dose independent rect. 7 1
62 373.19 radiation 30 4320 < th dose independent rect. 2 6
73 374.32 radiation 30 14400 > th dose dependent rect. 16 16
75 374.35 radiation 40 14400 > th dose dependent rect. 7 2
95 374.60 radiation 20 14400 > th dose dependent rect. 17 14
102 375.37 radiation 20 14400 > th dose dependent rect. 6 1
117 375.67 humidity 70 720 > th dose independent rect. 14 17
120 375.95 temperature 25 1440 > th dose dependent rect. 15 2
122 376.11 radiation 1 1440 < th dose independent rect. 16 14
123 376.29 radiation 1 1440 > th dose independent rect. 16 14
125 376.33 temperature 25 1440 > th dose dependent rect. 13 4
127 376.45 wind 5 43200 > th dose dependent rect. 11 18
135 376.72 radiation 30 4320 > th dose independent rect. 16 16
142 377.02 wind 5 43200 > th dose dependent rect. 12 11
143 377.02 temperature 25 720 > th dose dependent rect. 12 11
144 377.05 humidity 50 720 > th dose dependent rect. 16 10
151 377.20 temperature 25 1440 > th dose dependent rect. 13 9
156 377.28 wind 7 43200 > th dose independent rect. 12 17
163 377.35 wind 7 43200 < th dose independent rect. 12 17
165 377.37 wind 3 14400 > th dose dependent rect. 11 1
173 377.55 humidity 60 720 > th dose dependent rect. 16 4
197 377.82 humidity 70 720 > th dose independent rect. 14 19
222 378.12 radiation 1 1440 < th dose dependent rect. 18 7
227 378.16 radiation 1 1440 < th dose dependent rect. 18 3
242 378.31 temperature 30 720 < th dose independent rect. 17 9
252 378.41 radiation 1 1440 < th dose dependent rect. 18 1
262 378.50 wind 5 43200 > th dose dependent sin 18 NA
274 378.62 radiation 30 4320 > th dose independent rect. 7 1
300 378.73 humidity 60 720 > th dose dependent rect. 17 2
304 378.76 wind 9 14400 < th dose independent rect. 16 1
326 378.94 temperature 25 1440 > th dose dependent rect. 13 20
328 378.95 temperature 25 720 > th dose dependent sin 18 NA
335 379.02 radiation 40 14400 < th dose dependent rect. 23 6
338 379.04 wind 7 43200 < th dose independent sin 17 NA
355 379.15 wind 5 43200 > th dose dependent rect. 15 1
357 379.16 wind 5 43200 < th dose independent rect. 24 17
364 379.21 wind 7 43200 > th dose independent sin 17 NA
367 379.23 wind 7 43200 < th dose independent rect. 3 19
382 379.28 humidity 70 720 < th dose independent sin 13 NA
383 379.28 wind 5 43200 > th dose independent rect. 24 17
415 379.45 wind 5 43200 > th dose independent rect. 3 14
418 379.45 wind 5 43200 < th dose independent rect. 2 15
429 379.53 wind 7 43200 > th dose independent rect. 3 19
446 379.60 temperature 25 1440 > th dose dependent sin 20 NA
447 379.60 temperature 30 1440 > th dose dependent rect. 14 22
498 379.85 wind 5 43200 > th dose dependent rect. 10 7
547 380.03 temperature 25 1440 > th dose dependent rect. 6 16
566 380.10 humidity 50 1440 > th dose dependent rect. 6 13
574 380.14 wind 7 43200 < th dose independent rect. 19 23
596 380.18 temperature 25 1440 > th dose dependent rect. 6 14
605 380.20 wind 7 43200 < th dose independent rect. 21 21
616 380.23 humidity 90 1440 < th dose dependent rect. 3 16
682 380.34 wind 7 43200 < th dose independent no NA NA
689 380.35 wind 7 43200 > th dose independent rect. 19 23
690 380.35 radiation 1 1440 < th dose dependent rect. 23 6
715 380.41 temperature 30 1440 > th dose dependent rect. 17 23
728 380.44 wind 7 43200 > th dose independent rect. 21 21
788 380.58 wind 7 43200 > th dose independent no NA NA
867 380.70 radiation 1 1440 < th dose dependent rect. 15 15