Os02g0822800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Galactose oxidase, central domain containing protein.
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Os02g0822800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Galactose oxidase, central domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.3 | 0.291 | 10.8 | -0.502 | 0.32 | -1.33 | 0.322 | 1.02 | 0.0964 | 23 | 23.8 | 559 | -- | -- |
| 39.93 | 0.294 | 10.8 | -0.437 | 0.329 | -1.46 | 0.313 | -- | 0.0817 | 23.1 | 23.78 | 572 | -- | -- |
| 38.68 | 0.29 | 10.8 | -0.492 | 0.332 | -1.34 | -- | 0.951 | 0.102 | 23 | 23.7 | 525 | -- | -- |
| 39.54 | 0.293 | 10.8 | -0.338 | 0.369 | -1.49 | -- | -- | 0.162 | 23.3 | 23.28 | 466 | -- | -- |
| 43.79 | 0.308 | 10.8 | -0.551 | -- | -1.37 | -- | 1.03 | 0.0357 | -- | 24.98 | 704 | -- | -- |
| 68.63 | 0.388 | 10.7 | 0.0172 | 0.439 | -- | 0.0999 | -- | 0.382 | 22.3 | -- | -- | -- | -- |
| 68.67 | 0.388 | 10.7 | 0.0134 | 0.438 | -- | -- | -- | 0.382 | 22.3 | -- | -- | -- | -- |
| 44.48 | 0.311 | 10.8 | -0.405 | -- | -1.56 | -- | -- | 0.0939 | -- | 23.88 | 714 | -- | -- |
| 42.49 | 0.304 | 10.8 | -- | 0.377 | -1.39 | -- | -- | 0.208 | 23.1 | 23.1 | 430 | -- | -- |
| 80.36 | 0.419 | 10.7 | 0.0201 | -- | -- | -- | -- | 0.383 | -- | -- | -- | -- | -- |
| 68.67 | 0.388 | 10.7 | -- | 0.438 | -- | -- | -- | 0.381 | 22.3 | -- | -- | -- | -- |
| 48.41 | 0.324 | 10.8 | -- | -- | -1.34 | -- | -- | 0.149 | -- | 24.52 | 685 | -- | -- |
| 80.37 | 0.418 | 10.7 | -- | -- | -- | -- | -- | 0.381 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.16 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 22 |
| 2 | 39.19 | temperature | 25 | 720 | < th | dose dependent | rect. | 14 | 22 |
| 16 | 39.37 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 22 | 39.46 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 25 | 39.52 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 37 | 39.66 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 42 | 39.76 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 46 | 39.81 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 11 |
| 96 | 40.18 | temperature | 25 | 1440 | < th | dose dependent | sin | 6 | NA |
| 229 | 40.95 | temperature | 15 | 720 | > th | dose dependent | rect. | 18 | 21 |
| 275 | 41.10 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 8 |
| 315 | 41.20 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 402 | 41.38 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 459 | 41.45 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 480 | 41.48 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 516 | 41.54 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 526 | 41.55 | temperature | 25 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 612 | 41.69 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 662 | 41.76 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |
| 672 | 41.76 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 689 | 41.80 | temperature | 10 | 1440 | > th | dose dependent | sin | 9 | NA |
| 852 | 42.04 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 927 | 42.16 | temperature | 20 | 720 | < th | dose independent | rect. | 8 | 22 |
| 949 | 42.21 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 23 |
| 954 | 42.21 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 971 | 42.23 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 23 |