Os03g0835800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Galactose oxidase, central domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os03g0835800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Galactose oxidase, central domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.32 | 0.222 | 9.78 | -0.605 | 0.338 | -0.396 | 0.286 | -0.264 | 0.214 | 1.3 | 24.1 | 16 | -- | -- |
| 22.4 | 0.222 | 9.79 | -0.642 | 0.335 | -0.367 | 0.196 | -- | 0.207 | 1.23 | 24.1 | 16 | -- | -- |
| 22.55 | 0.223 | 9.79 | -0.643 | 0.335 | -0.372 | -- | -0.0419 | 0.207 | 1.1 | 24.1 | 16 | -- | -- |
| 22.54 | 0.221 | 9.79 | -0.649 | 0.334 | -0.368 | -- | -- | 0.206 | 1.06 | 24.1 | 10 | -- | -- |
| 27.66 | 0.245 | 9.79 | -0.678 | -- | -0.315 | -- | 0.0746 | 0.186 | -- | 29.46 | 959 | -- | -- |
| 24.33 | 0.231 | 9.77 | -0.558 | 0.272 | -- | 0.209 | -- | 0.267 | 1.35 | -- | -- | -- | -- |
| 24.5 | 0.232 | 9.77 | -0.565 | 0.271 | -- | -- | -- | 0.266 | 1.15 | -- | -- | -- | -- |
| 27.59 | 0.245 | 9.78 | -0.646 | -- | -0.303 | -- | -- | 0.221 | -- | 35.1 | 1036 | -- | -- |
| 32.67 | 0.268 | 9.76 | -- | 0.282 | -0.129 | -- | -- | 0.314 | 1.04 | 23.36 | 11 | -- | -- |
| 29.07 | 0.252 | 9.77 | -0.554 | -- | -- | -- | -- | 0.271 | -- | -- | -- | -- | -- |
| 32.91 | 0.268 | 9.76 | -- | 0.262 | -- | -- | -- | 0.329 | 1.06 | -- | -- | -- | -- |
| 34.58 | 0.274 | 9.74 | -- | -- | 0.413 | -- | -- | 0.38 | -- | 40.55 | 14 | -- | -- |
| 37.18 | 0.285 | 9.76 | -- | -- | -- | -- | -- | 0.333 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.40 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 2 | 21.58 | temperature | 25 | 270 | > th | dose independent | rect. | 14 | 9 |
| 8 | 21.80 | wind | 1 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 11 | 21.81 | temperature | 20 | 720 | > th | dose dependent | rect. | 18 | 5 |
| 23 | 21.87 | wind | 1 | 270 | < th | dose independent | rect. | 4 | 1 |
| 29 | 21.91 | wind | 1 | 90 | > th | dose independent | rect. | 23 | 18 |
| 53 | 22.01 | temperature | 30 | 270 | < th | dose independent | rect. | 2 | 17 |
| 58 | 22.02 | temperature | 20 | 10 | > th | dose independent | rect. | 18 | 14 |
| 74 | 22.07 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 5 |
| 76 | 22.08 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 81 | 22.10 | temperature | 25 | 720 | > th | dose independent | rect. | 20 | 1 |
| 83 | 22.10 | wind | 1 | 90 | < th | dose independent | rect. | 4 | 14 |
| 101 | 22.14 | wind | 1 | 90 | < th | dose independent | rect. | 4 | 10 |
| 103 | 22.14 | temperature | 30 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 119 | 22.15 | wind | 1 | 30 | > th | dose independent | sin | 2 | NA |
| 134 | 22.17 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 14 |
| 144 | 22.18 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 12 |
| 146 | 22.18 | temperature | 25 | 270 | < th | dose dependent | rect. | 11 | 16 |
| 150 | 22.19 | temperature | 25 | 720 | < th | dose independent | rect. | 13 | 11 |
| 158 | 22.20 | temperature | 30 | 270 | < th | dose independent | sin | 5 | NA |
| 159 | 22.20 | temperature | 30 | 270 | < th | dose independent | rect. | 1 | 12 |
| 161 | 22.20 | wind | 1 | 30 | > th | dose independent | rect. | 19 | 23 |
| 162 | 22.20 | temperature | 30 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 193 | 22.21 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 10 |
| 202 | 22.22 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 9 |
| 204 | 22.22 | temperature | 30 | 270 | < th | dose independent | rect. | 24 | 21 |
| 210 | 22.22 | temperature | 15 | 90 | > th | dose dependent | rect. | 17 | 13 |
| 233 | 22.25 | temperature | 25 | 10 | < th | dose dependent | rect. | 11 | 19 |
| 252 | 22.27 | temperature | 15 | 10 | > th | dose dependent | sin | 11 | NA |
| 273 | 22.29 | temperature | 20 | 30 | > th | dose independent | rect. | 9 | 23 |
| 275 | 22.29 | temperature | 20 | 90 | > th | dose dependent | rect. | 17 | 8 |
| 279 | 22.29 | temperature | 30 | 270 | > th | dose dependent | rect. | 18 | 20 |
| 280 | 22.30 | temperature | 25 | 270 | > th | dose independent | sin | 17 | NA |
| 281 | 22.30 | temperature | 25 | 720 | > th | dose independent | rect. | 18 | 1 |
| 308 | 22.31 | temperature | 25 | 270 | < th | dose dependent | sin | 16 | NA |
| 309 | 22.31 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 4 |
| 310 | 22.31 | temperature | 30 | 270 | > th | dose dependent | rect. | 8 | 6 |
| 312 | 22.31 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 8 |
| 333 | 22.32 | temperature | 25 | 720 | > th | dose independent | sin | 19 | NA |
| 336 | 22.32 | temperature | 25 | 10 | < th | dose dependent | sin | 13 | NA |
| 343 | 22.32 | temperature | 25 | 270 | < th | dose dependent | rect. | 19 | 8 |
| 345 | 22.32 | temperature | 10 | 10 | > th | dose dependent | rect. | 18 | 14 |
| 373 | 22.34 | wind | 1 | 90 | > th | dose independent | rect. | 4 | 13 |
| 378 | 22.34 | temperature | 30 | 270 | > th | dose independent | rect. | 18 | 20 |
| 385 | 22.34 | wind | 3 | 720 | < th | dose dependent | rect. | 1 | 1 |
| 398 | 22.35 | temperature | 30 | 270 | > th | dose dependent | sin | 7 | NA |
| 404 | 22.35 | temperature | 15 | 10 | > th | dose dependent | rect. | 20 | 12 |
| 410 | 22.36 | temperature | 20 | 30 | > th | dose independent | sin | 13 | NA |
| 413 | 22.36 | wind | 7 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 415 | 22.36 | temperature | 10 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 418 | 22.36 | temperature | 30 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 422 | 22.36 | humidity | 50 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 431 | 22.36 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 432 | 22.36 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 433 | 22.36 | radiation | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 442 | 22.36 | wind | 1 | 90 | < th | dose independent | rect. | 4 | 4 |
| 443 | 22.36 | temperature | 30 | 270 | > th | dose independent | rect. | 9 | 5 |
| 451 | 22.36 | temperature | 10 | 1440 | > th | dose independent | rect. | 6 | 23 |
| 508 | 22.38 | temperature | 15 | 10 | > th | dose dependent | rect. | 18 | 12 |
| 517 | 22.39 | temperature | 30 | 270 | > th | dose independent | rect. | 11 | 2 |
| 528 | 22.39 | temperature | 30 | 10 | > th | dose dependent | rect. | 9 | 9 |
| 579 | 22.41 | temperature | 25 | 720 | > th | dose independent | rect. | 18 | 3 |
| 587 | 22.41 | atmosphere | 1010 | 90 | < th | dose independent | rect. | 17 | 15 |
| 588 | 22.41 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 1 |
| 597 | 22.42 | wind | 1 | 90 | < th | dose independent | sin | 3 | NA |
| 642 | 22.43 | temperature | 30 | 270 | > th | dose dependent | rect. | 11 | 2 |
| 646 | 22.43 | temperature | 30 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 647 | 22.43 | temperature | 20 | 10 | > th | dose dependent | rect. | 18 | 7 |
| 722 | 22.44 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 732 | 22.45 | temperature | 30 | 10 | > th | dose dependent | sin | 0 | NA |
| 776 | 22.47 | temperature | 30 | 270 | > th | dose independent | sin | 5 | NA |
| 834 | 22.48 | temperature | 30 | 90 | > th | dose dependent | sin | 3 | NA |
| 865 | 22.49 | atmosphere | 1000 | 10 | > th | dose independent | sin | 22 | NA |
| 866 | 22.49 | temperature | 20 | 90 | > th | dose independent | rect. | 4 | 1 |
| 867 | 22.49 | humidity | 80 | 720 | > th | dose independent | rect. | 21 | 1 |
| 872 | 22.49 | temperature | 20 | 10 | > th | dose independent | rect. | 16 | 9 |
| 877 | 22.49 | temperature | 20 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 947 | 22.50 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 10 |