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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0538800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Galactose oxidase, central domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.52 (0.0312) R2 : 0.628
β1 : -1.95 (0.114) R2dD : 0.256 R2D : 0.294
β2 : 1.49 (0.0758) R2dC : 0.339 R2C : 0.259
β3 : 0.827 (0.103) R2dE : 0.0656 R2E : 0.0498
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0673 (0.0696) R2dN8 : 0.00115 R2N8 : -0.0111
σ : 0.575
deviance : 152.31
__
_____
C
peak time of C : 1.24
E
wheather : humidity
threshold : 61.36
memory length : 1156
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
151.13 0.578 5.52 -1.94 1.5 0.837 0.544 0.0325 -0.068 1.21 62 1165 -- --
151.12 0.573 5.52 -1.93 1.5 0.841 0.539 -- -0.068 1.21 61.97 1156 -- --
152.26 0.575 5.52 -1.94 1.5 0.847 -- -0.188 -0.0702 1.23 61 1152 -- --
152.31 0.575 5.52 -1.95 1.49 0.827 -- -- -0.0673 1.24 61.36 1156 -- --
265.09 0.762 5.48 -2.05 -- 0.738 -- -0.104 0.0507 -- 61 1152 -- --
173.32 0.617 5.47 -2.1 1.35 -- 0.383 -- 0.12 1.27 -- -- -- --
173.92 0.618 5.47 -2.11 1.35 -- -- -- 0.118 1.29 -- -- -- --
210.59 0.679 5.45 -1.99 -- 0.843 -- -- 0.17 -- 74 1724 -- --
248.82 0.735 5.48 -- 1.52 1.18 -- -- 0.113 1.16 59 1154 -- --
286.16 0.79 5.46 -2.06 -- -- -- -- 0.146 -- -- -- -- --
291.25 0.798 5.42 -- 1.31 -- -- -- 0.353 1.23 -- -- -- --
314.34 0.828 5.4 -- -- 0.885 -- -- 0.391 -- 74 1724 -- --
397.81 0.931 5.4 -- -- -- -- -- 0.374 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 149.44 temperature 30 720 > th dose dependent rect. 18 1
29 150.63 humidity 80 720 < th dose dependent rect. 18 4
32 150.86 humidity 70 720 < th dose independent rect. 19 13
36 151.05 humidity 90 14400 > th dose independent rect. 22 1
38 151.19 temperature 30 720 > th dose independent rect. 18 1
54 151.65 humidity 70 720 < th dose independent rect. 19 1
65 151.69 humidity 70 720 < th dose dependent rect. 18 14
79 151.82 humidity 50 1440 < th dose independent rect. 16 1
81 151.83 radiation 40 1440 > th dose dependent rect. 13 21
94 151.90 humidity 50 1440 < th dose dependent rect. 16 1
95 151.95 wind 1 270 < th dose independent rect. 4 1
113 152.44 radiation 20 1440 > th dose independent rect. 16 18
115 152.61 radiation 40 1440 > th dose dependent sin 12 NA
116 152.62 wind 3 43200 > th dose independent rect. 1 3
117 152.73 wind 3 43200 < th dose independent rect. 1 3
137 152.87 radiation 20 1440 > th dose dependent rect. 16 16
140 153.04 humidity 70 720 > th dose independent rect. 19 1
141 153.05 humidity 80 1440 < th dose independent rect. 6 8
143 153.07 humidity 70 720 > th dose independent sin 11 NA
158 153.16 humidity 60 1440 > th dose dependent rect. 11 1
159 153.18 humidity 70 720 > th dose independent rect. 18 8
160 153.19 humidity 70 720 < th dose independent sin 11 NA
161 153.21 humidity 80 720 > th dose independent rect. 19 3
162 153.22 temperature 30 1440 < th dose independent rect. 18 10
163 153.22 humidity 70 1440 > th dose independent rect. 18 19
171 153.29 humidity 70 1440 < th dose independent rect. 17 19
173 153.31 radiation 20 1440 > th dose independent rect. 6 4
189 153.38 humidity 60 1440 > th dose independent sin 13 NA
192 153.41 wind 3 4320 < th dose independent rect. 3 1
210 153.44 radiation 20 1440 > th dose dependent rect. 6 2
230 153.50 humidity 50 1440 > th dose independent rect. 16 1
231 153.50 temperature 30 1440 < th dose independent rect. 18 2
232 153.50 humidity 60 1440 > th dose independent rect. 14 5
234 153.51 humidity 60 1440 > th dose independent rect. 14 11
235 153.51 humidity 60 1440 > th dose independent rect. 14 13
237 153.51 wind 1 14400 > th dose dependent rect. 2 3
241 153.53 humidity 60 1440 > th dose independent rect. 14 18
252 153.56 humidity 60 1440 < th dose independent sin 13 NA
253 153.56 wind 1 270 < th dose dependent rect. 4 1
256 153.58 humidity 60 1440 < th dose independent rect. 14 5
258 153.59 humidity 70 1440 < th dose dependent sin 12 NA
275 153.64 wind 3 43200 < th dose independent rect. 23 6
277 153.66 wind 3 43200 > th dose independent rect. 23 6
282 153.67 humidity 70 720 > th dose dependent rect. 19 2
333 153.75 humidity 80 1440 < th dose dependent rect. 16 20
336 153.79 humidity 90 14400 > th dose independent rect. 21 3
339 153.82 temperature 30 1440 < th dose independent rect. 18 14
340 153.82 humidity 50 14400 > th dose dependent rect. 4 2
344 153.85 wind 1 43200 > th dose dependent rect. 23 6
348 153.91 radiation 20 1440 > th dose independent sin 10 NA
353 153.93 wind 3 4320 > th dose independent rect. 3 1
354 153.93 temperature 30 1440 < th dose independent rect. 18 4
369 153.96 humidity 90 14400 < th dose independent rect. 21 2
373 153.99 humidity 70 1440 > th dose dependent rect. 7 1
374 153.99 wind 9 14400 < th dose dependent rect. 2 3
412 154.09 humidity 90 14400 > th dose independent rect. 17 7
436 154.17 radiation 1 4320 < th dose dependent rect. 6 11
474 154.22 radiation 40 1440 > th dose independent rect. 13 21
505 154.25 radiation 20 1440 > th dose dependent rect. 16 18
512 154.28 humidity 80 14400 < th dose dependent rect. 6 1
514 154.29 humidity 80 1440 > th dose independent rect. 6 8
522 154.33 humidity 90 14400 < th dose independent rect. 16 8
528 154.36 wind 9 14400 < th dose dependent rect. 4 1
530 154.38 humidity 70 720 > th dose independent rect. 18 15
531 154.38 wind 9 43200 < th dose dependent rect. 23 6
564 154.47 humidity 80 1440 < th dose independent rect. 7 1
570 154.49 humidity 60 1440 > th dose independent rect. 16 11
573 154.50 humidity 60 1440 > th dose independent rect. 16 9
582 154.52 humidity 60 1440 > th dose independent rect. 16 3
588 154.53 wind 9 14400 < th dose independent rect. 5 6
590 154.53 humidity 60 1440 > th dose independent rect. 16 16
595 154.54 humidity 60 1440 > th dose independent rect. 16 7
605 154.56 humidity 90 14400 < th dose independent rect. 19 4
628 154.58 radiation 40 1440 > th dose dependent rect. 8 3
652 154.60 humidity 50 1440 > th dose dependent rect. 7 1
680 154.63 wind 9 14400 > th dose independent rect. 5 6
794 154.79 humidity 90 14400 < th dose independent sin 18 NA
805 154.82 humidity 70 1440 > th dose independent rect. 19 13
807 154.83 radiation 40 1440 > th dose independent sin 12 NA
810 154.83 humidity 90 14400 < th dose independent rect. 9 16
818 154.85 humidity 90 14400 > th dose independent sin 17 NA
887 154.92 humidity 90 14400 < th dose independent rect. 7 18
888 154.92 radiation 40 43200 < th dose dependent rect. 3 2
907 154.93 temperature 25 720 > th dose dependent rect. 22 1
938 154.97 radiation 40 1440 > th dose dependent rect. 13 2
988 155.04 radiation 40 1440 < th dose independent rect. 9 1