Os09g0249000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Galactose oxidase, central domain containing protein.
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Os09g0249000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Galactose oxidase, central domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 82.76 | 0.427 | 11.1 | -1.1 | 1.01 | 2.12 | 0.538 | -3.04 | -0.117 | 13.7 | 21.18 | 1297 | -- | -- |
| 88.05 | 0.437 | 11 | -0.307 | 1.19 | 2.33 | 0.708 | -- | 0.0918 | 12.9 | 18.31 | 1048 | -- | -- |
| 83.83 | 0.426 | 11.1 | -1.12 | 1.04 | 2.15 | -- | -3.22 | -0.126 | 13.6 | 21.08 | 1263 | -- | -- |
| 89.29 | 0.44 | 11 | -0.288 | 1.2 | 2.67 | -- | -- | 0.0969 | 11.9 | 16.67 | 841 | -- | -- |
| 119.98 | 0.513 | 11 | -0.144 | -- | 2.37 | -- | -0.809 | 0.14 | -- | 19.21 | 21 | -- | -- |
| 205.79 | 0.673 | 10.9 | 0.464 | 0.757 | -- | 0.54 | -- | 0.569 | 13.6 | -- | -- | -- | -- |
| 206.95 | 0.674 | 10.9 | 0.481 | 0.757 | -- | -- | -- | 0.572 | 13.6 | -- | -- | -- | -- |
| 119.42 | 0.509 | 11 | -0.0531 | -- | 2.47 | -- | -- | 0.164 | -- | 18.03 | 18 | -- | -- |
| 90.84 | 0.444 | 11 | -- | 1.19 | 2.53 | -- | -- | 0.111 | 11.3 | 18.04 | 757 | -- | -- |
| 241.98 | 0.727 | 10.9 | 0.451 | -- | -- | -- | -- | 0.555 | -- | -- | -- | -- | -- |
| 213.05 | 0.683 | 10.9 | -- | 0.749 | -- | -- | -- | 0.518 | 13.6 | -- | -- | -- | -- |
| 119.39 | 0.509 | 11 | -- | -- | 2.45 | -- | -- | 0.173 | -- | 18.09 | 12 | -- | -- |
| 247.34 | 0.734 | 10.9 | -- | -- | -- | -- | -- | 0.505 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 80.62 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 3 | 81.68 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 4 | 81.86 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 7 |
| 6 | 81.88 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 7 | 81.92 | temperature | 20 | 1440 | > th | dose dependent | rect. | 12 | 19 |
| 8 | 81.94 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 15 |
| 19 | 82.08 | temperature | 20 | 1440 | > th | dose dependent | sin | 16 | NA |
| 25 | 82.17 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 5 |
| 99 | 83.54 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 123 | 84.02 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 22 |
| 138 | 84.19 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 143 | 84.21 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 23 |
| 157 | 84.28 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 164 | 84.32 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 21 |
| 196 | 84.54 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 300 | 85.68 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 371 | 86.54 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 23 |