BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0249000 Os09g0249000|AK072805
(332 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0249000 Galactose oxidase, central domain containing p... 627 e-180
Os12g0538800 Galactose oxidase, central domain containing p... 73 2e-13
Os01g0300900 Galactose oxidase, central domain containing p... 71 1e-12
Os03g0835800 Galactose oxidase, central domain containing p... 69 5e-12
Os04g0483600 Galactose oxidase, central domain containing p... 67 2e-11
Os11g0657000 Galactose oxidase, central domain containing p... 66 3e-11
>Os09g0249000 Galactose oxidase, central domain containing protein
Length = 332
Score = 627 bits (1617), Expect = e-180, Method: Compositional matrix adjust.
Identities = 314/332 (94%), Positives = 314/332 (94%)
Query: 1 MPMAAGTWVKLEQKGDGPGARSSHAITLVGGTAYAFGGEFTPRVPVDNAMYAFDLKSQCW 60
MPMAAGTWVKLEQKGDGPGARSSHAITLVGGTAYAFGGEFTPRVPVDNAMYAFDLKSQCW
Sbjct: 1 MPMAAGTWVKLEQKGDGPGARSSHAITLVGGTAYAFGGEFTPRVPVDNAMYAFDLKSQCW 60
Query: 61 SALDASGDVPPPRVGVTMASVGATVYMFGGRDQEHKELNELYSFDTATNRWTLLSSGAGD 120
SALDASGDVPPPRVGVTMASVGATVYMFGGRDQEHKELNELYSFDTATNRWTLLSSGAGD
Sbjct: 61 SALDASGDVPPPRVGVTMASVGATVYMFGGRDQEHKELNELYSFDTATNRWTLLSSGAGD 120
Query: 121 GPPHRSYHSMVADAAXXXXXXXXXXXXDAGRLNDLWAYDVAAGRWEALPSPGEACKPRGG 180
GPPHRSYHSMVADAA DAGRLNDLWAYDVAAGRWEALPSPGEACKPRGG
Sbjct: 121 GPPHRSYHSMVADAAGGGKVYVFGGCGDAGRLNDLWAYDVAAGRWEALPSPGEACKPRGG 180
Query: 181 PGLAVAGGKVWVVYGFSGEELDDVHCYDPGTGAWSTVETTXXXXXXDKPSPRSVFCAAGI 240
PGLAVAGGKVWVVYGFSGEELDDVHCYDPGTGAWSTVETT DKPSPRSVFCAAGI
Sbjct: 181 PGLAVAGGKVWVVYGFSGEELDDVHCYDPGTGAWSTVETTGGGGGGDKPSPRSVFCAAGI 240
Query: 241 GKHVVVFGGEVDPSDLGHLGAGKFSAEAFALDTETGAWARLDDAGEHHPGPRGWCAFSAG 300
GKHVVVFGGEVDPSDLGHLGAGKFSAEAFALDTETGAWARLDDAGEHHPGPRGWCAFSAG
Sbjct: 241 GKHVVVFGGEVDPSDLGHLGAGKFSAEAFALDTETGAWARLDDAGEHHPGPRGWCAFSAG 300
Query: 301 EVDGRRGLLVYGGNSPTNDRLGDIYFFTPPLA 332
EVDGRRGLLVYGGNSPTNDRLGDIYFFTPPLA
Sbjct: 301 EVDGRRGLLVYGGNSPTNDRLGDIYFFTPPLA 332
>Os12g0538800 Galactose oxidase, central domain containing protein
Length = 698
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 83/175 (47%), Gaps = 11/175 (6%)
Query: 24 HAITLVGGTAYAFGGEFTP---RVPVDNAMYAFDLKSQCWSALDASGDVPPPRVGVTMAS 80
H + G + GG+ P R+ A++ F+++++ WS ++A GD+P R G T+
Sbjct: 154 HCLVQWGNSVILVGGKTEPASDRL----AVWTFNMETEVWSLMEAKGDIPAARSGHTVTR 209
Query: 81 VGATVYMFGGRDQEHKELNELYSFDTATNRWTLLSSGAGDGPPHRSYHSMVADAAXXXXX 140
GAT+ +FGG D + K+ ++L+ FD ++ W L+ G GP RS H VA
Sbjct: 210 AGATLILFGGEDTKGKKRHDLHMFDLKSSTWLPLNY-KGSGPSPRSNH--VAALYEDRIL 266
Query: 141 XXXXXXXDAGRLNDLWAYDVAAGRWEALPSPGEACKPRGGPGLAVAGGKVWVVYG 195
+ LNDL++ D W + G PR G + G K W + G
Sbjct: 267 LIFGGHSKSKTLNDLFSLDFETMVWSRVKIHGPHPTPRAGCSGVLCGTK-WYIAG 320
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
Query: 3 MAAGTWVKLEQKGDGPGARSSHAITLVGGTAYAFGGEFTPRVPVDNAMYAFDLKSQCWSA 62
M W +E KGD P ARS H +T G T FGGE T + + ++ FDLKS W
Sbjct: 184 METEVWSLMEAKGDIPAARSGHTVTRAGATLILFGGEDT-KGKKRHDLHMFDLKSSTWLP 242
Query: 63 LDASGDVPPPRVGVTMASVGATVYMFGGRDQEHKELNELYSFDTATNRWT 112
L+ G P PR A + + G + K LN+L+S D T W+
Sbjct: 243 LNYKGSGPSPRSNHVAALYEDRILLIFGGHSKSKTLNDLFSLDFETMVWS 292
>Os01g0300900 Galactose oxidase, central domain containing protein
Length = 624
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 88/333 (26%), Positives = 128/333 (38%), Gaps = 46/333 (13%)
Query: 8 WVKLEQKGDGPGARSSHAITLVGGTAYAFGG-----EFTPRVPVDNAMYAFDLKSQCWSA 62
W+ + G P R H+ G Y FGG F+ + +L++ WS+
Sbjct: 9 WLYPKVVGFNPPERWGHSACFFEGVVYVFGGCCGGLHFS-------DVLTLNLETMAWSS 61
Query: 63 LDASGDVPPPRVGVTMASVGATVYMFGGRDQEHKELNELYSFDTATNRWTLLSSGAGDGP 122
L +G P R A VG + +FGG + K++N+L+ D T WT G P
Sbjct: 62 LATTGARPGTRDSHGAALVGHRMMVFGGTNGS-KKVNDLHVLDLRTKEWT-KPPCKGTPP 119
Query: 123 PHRSYHSMVADAAXXXXXXXXXXXXDAGR-LNDLWAYDVAAGRWEALPSPGEAC-KPRGG 180
R H++ A G LND+ DVA W + G+ PR
Sbjct: 120 SPRESHTVTACGGCDRLVVFGGSGEGEGNYLNDVHVLDVATMTWSSPEVKGDVVPAPRDS 179
Query: 181 PGLAVAGGKVWVVYG------FSGEELDDVHCYDPGTGAWSTVETTXXXXXXDKPSPRSV 234
G AVA G VVYG + GE V D AWS P R+
Sbjct: 180 HG-AVAVGSRLVVYGGDCGDRYHGE----VDVLDMDAMAWSRFAVKGA-----SPGVRAG 229
Query: 235 FCAAGIGKHVVVFGGEVDPSDLGHLGAGKFSAEAFALDTETGAWARLDDAGEHHPGPRGW 294
A G+G V V GG +G ++ ++A+ LD +W +L+ G+ P+G
Sbjct: 230 HAAVGVGSKVYVIGG---------VGDKQYYSDAWILDVANRSWTQLEICGQQ---PQG- 276
Query: 295 CAFSAGEVDGRRGLLVYGGNSPTNDRLGDIYFF 327
FS V + +YGG L ++
Sbjct: 277 -RFSHSAVVLNTDIAIYGGCGEDERPLNELLIL 308
>Os03g0835800 Galactose oxidase, central domain containing protein
Length = 476
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 80/277 (28%), Positives = 119/277 (42%), Gaps = 41/277 (14%)
Query: 56 KSQCWSALDAS---GDVPPPRVGVTMASVGAT-VYMFGGRDQEHKELNELYSFDTATNRW 111
K W+ D+S G +P PR G T S+G + V +FGG + + L+++ +D W
Sbjct: 8 KQMHWARADSSDFGGQIPAPRSGHTAVSIGKSKVVVFGGF-ADKRFLSDIAVYDVENRIW 66
Query: 112 -TLLSSGAGD----GPPHRSYH-SMVADAAXXXXXXXXXXXXDAGRLNDLWAYDVAAGRW 165
T +G+G GP R++H ++V D RL D W D +W
Sbjct: 67 YTPECNGSGSDGQAGPSPRAFHVAIVIDCNMFIFGGRSG----GKRLGDFWMLDTDIWQW 122
Query: 166 EALPSPGEACKPRGGPGLAVAGGKVWVVY-GFSGEE-LDDVHCYDPGTGAWSTVETTXXX 223
L G+ PR + G + V+Y G+ G++ L DV+ D + W+ + T
Sbjct: 123 SELTGFGDLPSPREFAAASAIGNRKIVMYGGWDGKKWLSDVYIMDTMSLEWTELSVTGSV 182
Query: 224 XXXDKPSPRSVFCAAGIGKHVVVFGGEVDPSDLGHLGAGKFSAEAFAL------DTETGA 277
P PR A I K ++VFGG GAG + +AL D ET
Sbjct: 183 -----PPPRCGHSATMIEKRLLVFGGRG--------GAGPIMGDLWALKGVTEEDNETPG 229
Query: 278 WARLDDAGEHHPGPRGWCAFSAGEVDGRRGLLVYGGN 314
W +L G+ P PR C S G LL++GG+
Sbjct: 230 WTQLKLPGQ-SPSPR--CGHSV--TSGGPYLLLFGGH 261
>Os04g0483600 Galactose oxidase, central domain containing protein
Length = 662
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 80/308 (25%), Positives = 121/308 (39%), Gaps = 40/308 (12%)
Query: 4 AAGTWVKLEQKGDGPGARSSHAIT---LVGGTAYAFGGEFT--PRVPVDNAMYAFDLKSQ 58
A V +++ P RS+ ++T L +GGEF + V +Y +D++
Sbjct: 52 AKKKEVHIDENVPAPSPRSNCSLTINPLKDTELVLYGGEFYNGSKTFVYGDLYRYDVEKN 111
Query: 59 CWSALDASGDVPPPRVGVTMASVGATVYMFGGR----DQEH-KELNELYSFDTATNRW-T 112
W + + PP T+A +YMFGG +QE + +S D TN+W
Sbjct: 112 EWKLVSSPNSPPPRSAHQTVAWKN-NIYMFGGEFTSPNQERFHHYKDFWSLDLKTNQWEQ 170
Query: 113 LLSSGAGDGPPHRSYHSMVADAAXXXXXXXXXXXXDAGRL-NDLWAYDVAAGRWEAL-PS 170
+L+ G P RS H MV R NDL +D+ +WE + P
Sbjct: 171 ILAKGC---PSARSGHRMVLYKHKIVLFGGFYDTLREVRYYNDLHVFDLDNFKWEEIKPR 227
Query: 171 PGEAC---KPRGGPGLAVAGGKVWVVYGFSGEELD-------------DVHCYDPGTGAW 214
PG C PR G L V ++++ G+ E + D+ DP T W
Sbjct: 228 PG--CLWPSPRSGFQLMVYQDQIYLYGGYFKEVVSSDKSASEKGTVHADMWTLDPRTWEW 285
Query: 215 STVETTXXXXXXDKPSPRSVFCAAGIGKHVVVFGGEVDPSDLGHLGAGKFSAEAFALDTE 274
+ V+ T P PR+ F K V+FGG VD G + F E + +
Sbjct: 286 NKVKKTGMP-----PGPRAGFSMCVHKKRAVLFGGVVDMEIEGDVIMSMFMNELYGFQLD 340
Query: 275 TGAWARLD 282
W L+
Sbjct: 341 NHRWYPLE 348
>Os11g0657000 Galactose oxidase, central domain containing protein
Length = 530
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 78/167 (46%), Gaps = 7/167 (4%)
Query: 30 GGTAYAFGGEFTPRVPVDN-AMYAFDLKSQCWSALDASGDVPPPRVGVTMASVGATVYMF 88
G GG+ P P D ++++F+ ++ WS ++ GD+P R G T+ G + +F
Sbjct: 4 GKNVILVGGKTDP--PSDRISVWSFNTETDLWSYIEVKGDIPVARSGHTVIRAGPVLILF 61
Query: 89 GGRDQEHKELNELYSFDTATNRWTLLSSGAGDGPPHRSYHSMVADAAXXXXXXXXXXXXD 148
GG D + K+L++L+ FD ++ W L+ G GP RS H VA
Sbjct: 62 GGEDGKGKKLHDLHMFDLKSSTWLPLNY-KGAGPSPRSNH--VAALYDDRILLIFGGQSK 118
Query: 149 AGRLNDLWAYDVAAGRWEALPSPGEACKPRGGPGLAVAGGKVWVVYG 195
+ LND+ A D W + + G PR G A+ G K W + G
Sbjct: 119 SKTLNDVHALDFETMVWSRVKTHGHHPSPRAGCCGALCGTK-WYIAG 164
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.137 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,785,628
Number of extensions: 731143
Number of successful extensions: 1893
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1827
Number of HSP's successfully gapped: 10
Length of query: 332
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 231
Effective length of database: 11,762,187
Effective search space: 2717065197
Effective search space used: 2717065197
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)