Os11g0657000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Galactose oxidase, central domain containing protein.
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Os11g0657000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Galactose oxidase, central domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 476.02 | 1.03 | 5.23 | -2.88 | 5.86 | -9.35 | 8.63 | -5.23 | 0.201 | 3.51 | 0.85 | 743 | 10.5 | -- |
| 478.15 | 1.02 | 5.25 | -3 | 5.59 | -9.07 | 4.42 | -- | 0.17 | 3.51 | 0.8402 | 748 | 10.5 | -- |
| 490.77 | 1.03 | 5.23 | -2.9 | 5.62 | -8.91 | -- | 5.42 | 0.242 | 3.46 | 1.81 | 744 | 10.3 | -- |
| 536.82 | 1.08 | 5.26 | -3.17 | 5.56 | -9.15 | -- | -- | 0.177 | 3.53 | 0.6699 | 750 | 10.6 | -- |
| 784.34 | 1.31 | 5.26 | -2.8 | -- | 0.741 | -- | 1.27 | 0.331 | -- | 4.38 | 1317 | 11.3 | -- |
| 625.06 | 1.17 | 5.27 | -2.72 | 1.76 | -- | -4.17 | -- | 0.364 | 17.1 | -- | -- | -- | -- |
| 660.25 | 1.2 | 5.3 | -2.74 | 1.79 | -- | -- | -- | 0.341 | 17.9 | -- | -- | -- | -- |
| 608.24 | 1.15 | 5.37 | -3.47 | -- | -4.26 | -- | -- | -0.408 | -- | 0.8101 | 1205 | 14.3 | -- |
| 757.47 | 1.28 | 5.2 | -- | 4.45 | -8.05 | -- | -- | 0.498 | 3.6 | 3.71 | 777 | 10 | -- |
| 826.52 | 1.34 | 5.27 | -2.79 | -- | -- | -- | -- | 0.3 | -- | -- | -- | -- | -- |
| 857.44 | 1.37 | 5.23 | -- | 1.83 | -- | -- | -- | 0.646 | 17.9 | -- | -- | -- | -- |
| 783.05 | 1.3 | 5.24 | -- | -- | -4.24 | -- | -- | 0.189 | -- | 6.481 | 1222 | 12.5 | -- |
| 1031.68 | 1.5 | 5.2 | -- | -- | -- | -- | -- | 0.609 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 475.35 | radiation | 1 | 720 | < th | dose dependent | rect. | 9 | 18 |
| 3 | 476.31 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 22 |
| 10 | 481.97 | radiation | 1 | 720 | < th | dose independent | rect. | 9 | 18 |
| 16 | 484.23 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 22 |
| 19 | 485.68 | radiation | 1 | 720 | < th | dose independent | sin | 16 | NA |
| 20 | 485.69 | radiation | 1 | 720 | < th | dose dependent | sin | 16 | NA |
| 21 | 487.46 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 5 |
| 33 | 489.68 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 9 |
| 45 | 492.50 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 12 |
| 49 | 493.20 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 6 |
| 69 | 495.32 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 22 |
| 72 | 495.66 | humidity | 70 | 720 | > th | dose independent | sin | 14 | NA |
| 85 | 497.16 | humidity | 80 | 720 | < th | dose independent | rect. | 17 | 5 |
| 92 | 497.84 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 2 |
| 108 | 498.78 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 8 |
| 115 | 499.31 | humidity | 80 | 720 | < th | dose independent | rect. | 15 | 7 |
| 124 | 499.69 | humidity | 70 | 720 | < th | dose independent | sin | 13 | NA |
| 128 | 499.98 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 15 |
| 132 | 500.29 | temperature | 25 | 720 | > th | dose dependent | sin | 13 | NA |
| 176 | 504.12 | radiation | 1 | 720 | > th | dose independent | sin | 14 | NA |
| 198 | 505.02 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 16 |
| 214 | 505.85 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 6 |
| 216 | 505.85 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 13 |
| 218 | 505.90 | humidity | 70 | 720 | < th | dose independent | rect. | 14 | 19 |
| 261 | 507.18 | temperature | 25 | 720 | > th | dose dependent | rect. | 21 | 1 |
| 270 | 507.65 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 22 |
| 282 | 508.21 | radiation | 10 | 1440 | < th | dose dependent | sin | 20 | NA |
| 286 | 508.28 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 9 |
| 325 | 508.72 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 10 |
| 355 | 509.83 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 13 |
| 378 | 510.49 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 6 |
| 384 | 510.67 | radiation | 10 | 1440 | < th | dose dependent | rect. | 14 | 4 |
| 388 | 510.86 | radiation | 20 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 408 | 511.42 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 19 |
| 418 | 511.79 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 446 | 512.33 | humidity | 90 | 720 | < th | dose dependent | sin | 15 | NA |
| 460 | 512.65 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 8 |
| 471 | 512.86 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 487 | 513.15 | radiation | 10 | 1440 | > th | dose independent | rect. | 5 | 12 |
| 502 | 513.25 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 8 |
| 525 | 513.62 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 594 | 513.66 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 627 | 514.08 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 17 |
| 633 | 514.15 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 12 |
| 662 | 514.59 | humidity | 80 | 720 | < th | dose dependent | sin | 13 | NA |
| 664 | 514.61 | humidity | 70 | 720 | > th | dose independent | rect. | 13 | 21 |
| 753 | 515.67 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 6 |
| 802 | 516.12 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 844 | 516.56 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 16 |
| 853 | 516.64 | radiation | 1 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 868 | 516.79 | radiation | 10 | 1440 | > th | dose independent | sin | 23 | NA |
| 880 | 516.99 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 14 |
| 933 | 517.47 | humidity | 90 | 720 | < th | dose dependent | rect. | 11 | 12 |
| 947 | 517.61 | temperature | 25 | 720 | > th | dose independent | sin | 17 | NA |
| 988 | 518.05 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 5 |