BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0409600 Os04g0409600|AK066667
(309 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0409600 Similar to Histone deacetylase 512 e-145
Os06g0583400 Similar to Histone deacetylase (Fragment) 297 5e-81
Os02g0214900 Similar to Histone deacetylase 289 1e-78
Os08g0344100 Similar to Histone deacetylase 282 3e-76
Os01g0586400 200 1e-51
Os11g0200000 Histone deacetylase family protein 180 1e-45
AK120027 170 2e-42
Os11g0201400 Histone deacetylase family protein 162 3e-40
Os05g0440100 Histone deacetylase superfamily protein 89 5e-18
Os05g0440300 Similar to S1 self-incompatibility locus-linke... 84 1e-16
Os07g0164100 Histone deacetylase superfamily protein 84 2e-16
Os07g0602200 Similar to HDA1 75 5e-14
Os12g0182700 Histone deacetylase superfamily protein 71 9e-13
AK110273 68 8e-12
>Os04g0409600 Similar to Histone deacetylase
Length = 309
Score = 512 bits (1318), Expect = e-145, Method: Compositional matrix adjust.
Identities = 278/291 (95%), Positives = 278/291 (95%)
Query: 1 IIKHVILLSIGLVDXXXXXXXXXXXXXXXXXXXXXXXSFSIPCQVLYIDIDVHHGDGVEE 60
IIKHVILLSIGLVD SFSIPCQVLYIDIDVHHGDGVEE
Sbjct: 1 IIKHVILLSIGLVDXXXXXXXXXXXXXXXXXXXXXXXSFSIPCQVLYIDIDVHHGDGVEE 60
Query: 61 AFYFTDRVMTVSFHKYGDFFFPGTGDIKDIGEREGKYYAINIPLKDGIDDSGFTRLFKTV 120
AFYFTDRVMTVSFHKYGDFFFPGTGDIKDIGEREGKYYAINIPLKDGIDDSGFTRLFKTV
Sbjct: 61 AFYFTDRVMTVSFHKYGDFFFPGTGDIKDIGEREGKYYAINIPLKDGIDDSGFTRLFKTV 120
Query: 121 IAKVVETYLPGAIVLQCGADSLARDRLGCFNLSIEGHAECVKFVKKFNIPLLVTGGGGYT 180
IAKVVETYLPGAIVLQCGADSLARDRLGCFNLSIEGHAECVKFVKKFNIPLLVTGGGGYT
Sbjct: 121 IAKVVETYLPGAIVLQCGADSLARDRLGCFNLSIEGHAECVKFVKKFNIPLLVTGGGGYT 180
Query: 181 KENVARCWAVETGVLLDTELPNEIPDNEYIKYFAPDYTLKVSNVNMDNLNSKSYLSSIKV 240
KENVARCWAVETGVLLDTELPNEIPDNEYIKYFAPDYTLKVSNVNMDNLNSKSYLSSIKV
Sbjct: 181 KENVARCWAVETGVLLDTELPNEIPDNEYIKYFAPDYTLKVSNVNMDNLNSKSYLSSIKV 240
Query: 241 QVMESLRAIQHAPGVQMQEVPPDFYXXXXXXXXXXXXXRVDQHTQDKQIHR 291
QVMESLRAIQHAPGVQMQEVPPDFY RVDQHTQDKQIHR
Sbjct: 241 QVMESLRAIQHAPGVQMQEVPPDFYIPDIDEDELDPDERVDQHTQDKQIHR 291
>Os06g0583400 Similar to Histone deacetylase (Fragment)
Length = 518
Score = 297 bits (761), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 139/220 (63%), Positives = 178/220 (80%), Gaps = 1/220 (0%)
Query: 44 QVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKYGDFFFPGTGDIKDIGEREGKYYAINIP 103
+VLY+DID+HHGDGVEEAFY TDRVMTVSFHK+GD+F PGTGDI+DIG +GKYY++N+P
Sbjct: 181 RVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYF-PGTGDIRDIGHSKGKYYSLNVP 239
Query: 104 LKDGIDDSGFTRLFKTVIAKVVETYLPGAIVLQCGADSLARDRLGCFNLSIEGHAECVKF 163
L DGIDD + LFK ++ KV+E + PGA+VLQCGADSL+ DRLGCFNLSI GHAECV+F
Sbjct: 240 LDDGIDDESYQSLFKPIMGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIRGHAECVRF 299
Query: 164 VKKFNIPLLVTGGGGYTKENVARCWAVETGVLLDTELPNEIPDNEYIKYFAPDYTLKVSN 223
++ FN+PLL+ GGGGYT NVARCW ETGV L EL +++P NEY +YF PDYTL V+
Sbjct: 300 MRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGHELTDKMPPNEYFEYFGPDYTLHVAP 359
Query: 224 VNMDNLNSKSYLSSIKVQVMESLRAIQHAPGVQMQEVPPD 263
NM+N N++ L I+ +++++L ++HAP VQ QE PP+
Sbjct: 360 SNMENKNTRQQLDDIRSRLLDNLSKLRHAPSVQFQERPPE 399
>Os02g0214900 Similar to Histone deacetylase
Length = 510
Score = 289 bits (740), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 140/220 (63%), Positives = 174/220 (79%), Gaps = 1/220 (0%)
Query: 44 QVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKYGDFFFPGTGDIKDIGEREGKYYAINIP 103
+VLYIDID+HHGDGVEEAFY T+RVMTVSFHK+GD+F PGTGDI+DIG EGKYY +N+P
Sbjct: 186 RVLYIDIDIHHGDGVEEAFYTTNRVMTVSFHKFGDYF-PGTGDIRDIGYSEGKYYCLNVP 244
Query: 104 LKDGIDDSGFTRLFKTVIAKVVETYLPGAIVLQCGADSLARDRLGCFNLSIEGHAECVKF 163
L DGIDD + +FK +I+KV+E Y PGA+VLQCGADSL+ DRLGCFNLS +GHAECVKF
Sbjct: 245 LDDGIDDDSYQSIFKPIISKVMEMYRPGAVVLQCGADSLSGDRLGCFNLSGKGHAECVKF 304
Query: 164 VKKFNIPLLVTGGGGYTKENVARCWAVETGVLLDTELPNEIPDNEYIKYFAPDYTLKVSN 223
++ FN+PLL+ GGGGYT NVARCW ETGV L EL ++P NEY +YF P+Y+L V+
Sbjct: 305 MRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGEELQEKLPYNEYYEYFGPEYSLYVAA 364
Query: 224 VNMDNLNSKSYLSSIKVQVMESLRAIQHAPGVQMQEVPPD 263
NM+N N+ L IK ++++L +QHAP VQ QE P+
Sbjct: 365 SNMENRNTNKQLEEIKCNILDNLSKLQHAPSVQFQERIPE 404
>Os08g0344100 Similar to Histone deacetylase
Length = 458
Score = 282 bits (721), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 128/220 (58%), Positives = 165/220 (75%), Gaps = 1/220 (0%)
Query: 44 QVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKYGDFFFPGTGDIKDIGEREGKYYAINIP 103
+VLY+DIDVHHGDGVEEAF+ T+RVMT SFHKYGDFF PGTG I D+G EGK+YA+N+P
Sbjct: 182 RVLYVDIDVHHGDGVEEAFFTTNRVMTCSFHKYGDFF-PGTGHITDVGAGEGKHYALNVP 240
Query: 104 LKDGIDDSGFTRLFKTVIAKVVETYLPGAIVLQCGADSLARDRLGCFNLSIEGHAECVKF 163
L DGIDD F LF+ +I KV+E Y P +VLQCGADSLA DRLGCFNLS++GHA+C+++
Sbjct: 241 LSDGIDDDTFRDLFQCIIKKVMEVYQPDVVVLQCGADSLAGDRLGCFNLSVKGHADCLRY 300
Query: 164 VKKFNIPLLVTGGGGYTKENVARCWAVETGVLLDTELPNEIPDNEYIKYFAPDYTLKVSN 223
++ FNIP++V GGGGYT NVARCW ET V + E N++P N+Y +YF PDY L +
Sbjct: 301 LRSFNIPMMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNDYYEYFGPDYNLHIQP 360
Query: 224 VNMDNLNSKSYLSSIKVQVMESLRAIQHAPGVQMQEVPPD 263
+++NLNS L +IK +++ L I+H P Q + P D
Sbjct: 361 RSVENLNSTKDLENIKSMILDHLSKIEHVPSTQFHDRPSD 400
>Os01g0586400
Length = 481
Score = 200 bits (508), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 104/224 (46%), Positives = 155/224 (69%), Gaps = 9/224 (4%)
Query: 44 QVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKYGDFFFPGTGDIKDIGER-EGKYYAINI 102
+VLY+DIDVHHGDGV+ AF ++RVMTVSFH++G FFPG+G + D+G++ G+Y A+N+
Sbjct: 193 RVLYVDIDVHHGDGVQAAFEASNRVMTVSFHQHGGGFFPGSGAVADVGKKGPGRYCALNV 252
Query: 103 PLKDGIDDSGFTRLFKTVIAKVVETYLPGAIVLQCGADSLARDRLGCFNLSIEGHAECVK 162
P+ GI D + RLF+ ++A+V+E + P A+VLQCGADSLA DRLG NL+ GHA+CV
Sbjct: 253 PVSVGIGDEEYHRLFEPIMARVMEVFQPEAVVLQCGADSLAGDRLGELNLTTRGHAQCVS 312
Query: 163 FVKKFNIPLLVTGGGGYTKENVARCWAVETGVLLDTELPNEIPDNEYIKYFAPD-----Y 217
F++ FN+PLL+ GGGGYT +VA CW ET V + E+PN+IP + + ++ Y
Sbjct: 313 FIRSFNLPLLLLGGGGYTINHVASCWCNETAVAIGKEIPNDIPKHGFDVFYKNQEYKLHY 372
Query: 218 TLKVSNVNMDNLNSKSYLSSIKVQVMESLR--AIQHAPGVQMQE 259
L+ +++ N N+ + + I++ ME+L ++ A VQ +E
Sbjct: 373 KLETKHLHR-NRNTANSIDGIRMAAMENLSKLKLEAAASVQFEE 415
>Os11g0200000 Histone deacetylase family protein
Length = 456
Score = 180 bits (457), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 104/227 (45%), Positives = 144/227 (63%), Gaps = 11/227 (4%)
Query: 44 QVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKYGDF-----FFPGTGDIKDIGEREGKYY 98
+V+Y+DID HHGDGV+ AF ++RVMT+SFH+YG FFPG+G I +IG+ G++Y
Sbjct: 185 RVIYVDIDAHHGDGVQNAFLDSNRVMTLSFHRYGKITPHKDFFPGSGAINEIGDGAGEHY 244
Query: 99 AINIPLKDGIDDSGFTRLFKTVIAKVVETYLPGAIVLQCGADSLARDRLGCFNLSIEGHA 158
++N+PL G+ D + LFK ++ K +E + P AIVLQCGADSL+ DRLG LS+ GHA
Sbjct: 245 SVNVPLDAGVRDDVYHTLFKPIVGKAMEVFQPEAIVLQCGADSLSGDRLGGMELSVRGHA 304
Query: 159 ECVKFVKKFNIPLLVTGGGGYTKENVARCWAVETGVLLDTE--LPN--EIPDNEY-IKYF 213
ECV F++ FN+PLL+ GGGGYT +VA W ET V + E LP+ EIP + Y + Y
Sbjct: 305 ECVSFLRGFNLPLLLVGGGGYTINHVASAWCYETAVAVGKERKLPDDIEIPSHGYELMYK 364
Query: 214 APDYTLKVSNVNMDNLNSKSYLSSI-KVQVMESLRAIQHAPGVQMQE 259
L +S + + K +V+E L ++ AP VQ QE
Sbjct: 365 NQGNKLHYKTSTATAARKRSSSTEVTKGKVLEHLSQVKRAPSVQFQE 411
>AK120027
Length = 266
Score = 170 bits (430), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 85/150 (56%), Positives = 109/150 (72%)
Query: 114 TRLFKTVIAKVVETYLPGAIVLQCGADSLARDRLGCFNLSIEGHAECVKFVKKFNIPLLV 173
++ K KV+E Y PGA+VLQCGADSL+ DRLGCFNLS +GHAECVKF++ FN+PLL+
Sbjct: 11 SKKTKRKQCKVMEMYRPGAVVLQCGADSLSGDRLGCFNLSGKGHAECVKFMRSFNVPLLL 70
Query: 174 TGGGGYTKENVARCWAVETGVLLDTELPNEIPDNEYIKYFAPDYTLKVSNVNMDNLNSKS 233
GGGGYT NVARCW ETGV L EL ++P NEY +YF P+Y+L V+ NM+N N+
Sbjct: 71 LGGGGYTIRNVARCWCYETGVALGEELQEKLPYNEYYEYFGPEYSLYVAASNMENRNTNK 130
Query: 234 YLSSIKVQVMESLRAIQHAPGVQMQEVPPD 263
L IK ++++L +QHAP VQ QE P+
Sbjct: 131 QLEEIKCNILDNLSKLQHAPSVQFQERIPE 160
>Os11g0201400 Histone deacetylase family protein
Length = 461
Score = 162 bits (410), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 102/227 (44%), Positives = 137/227 (60%), Gaps = 23/227 (10%)
Query: 44 QVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKYGDF-----FFPGTGDIKDIGEREGKYY 98
+V+Y+DID HHGDGV+ AF ++RVMT+SFH+YG FFPG+G I +IG G++Y
Sbjct: 185 RVIYVDIDAHHGDGVQNAFLDSNRVMTLSFHRYGKITPHKNFFPGSGAINEIGAGAGEHY 244
Query: 99 AINIPLKDGIDDSGFTRLFKTVIAKVVETYLPGAIVLQCGADSLARDRLGCFNLSIEGHA 158
++N+PL G V A +E + P AIVLQCGADSL+ DRLG LS+ GHA
Sbjct: 245 SVNVPLDAG------------VRADAMEVFQPEAIVLQCGADSLSGDRLGGMELSVRGHA 292
Query: 159 ECVKFVKKFNIPLLVTGGGGYTKENVARCWAVETGVLL--DTELPN--EIPDNEY-IKYF 213
ECV F++ FN+PLL+ GGGGYT +VA W ET V + + ELP+ EIP + Y + Y
Sbjct: 293 ECVGFLRGFNLPLLLVGGGGYTINHVASTWCYETAVAVGKERELPDDIEIPSHGYELMYK 352
Query: 214 APDYTLKVSNVNMDNLNSKSYLSSI-KVQVMESLRAIQHAPGVQMQE 259
L +S + + K +V+E L I+ AP VQ QE
Sbjct: 353 NQGDKLHYQKSTATAARKRSSSAEVTKGKVLEHLSQIERAPSVQFQE 399
>Os05g0440100 Histone deacetylase superfamily protein
Length = 392
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 99/191 (51%), Gaps = 13/191 (6%)
Query: 44 QVLYIDIDVHHGDGVEEAFYFTDRVMTVSFH-KYGDF--FFPGTGDIKDIGEREGKYYAI 100
+V +DIDVH+G+G E FY TD V+T+S H K+G + P +G + +IGE G Y +
Sbjct: 190 KVAVVDIDVHYGNGTAEGFYHTDSVLTISLHMKHGSWGPSHPQSGSVDEIGEGRGLGYNL 249
Query: 101 NIPLKDGIDDSGFTRLFKTVIAKVVETYLPGAIVLQCGADSLARDRLGCFNLSIEGHAEC 160
NIPL +G D+G+ ++ +E + P +V G DS D G L+++G+ +
Sbjct: 250 NIPLPNGSGDAGYEYAMNELVVPAIEKFRPELLVFVVGQDSSTFDPNGRQCLTMDGYRKI 309
Query: 161 VKFVKKF-----NIPLLVTGGGGYTKENVARCWAVETGVLLDTELPNEIPDNEYIKYFAP 215
+ ++ N +L+ GGY A C +L+ + P + D+ I Y+
Sbjct: 310 GQIMRGMADQHSNGQILIVQEGGYHISYSAYCLHATLEGVLNLQAP--LLDDP-IAYYPE 366
Query: 216 D--YTLKVSNV 224
D YT+KV ++
Sbjct: 367 DEKYTMKVVDI 377
>Os05g0440300 Similar to S1 self-incompatibility locus-linked G221 protein
(Fragment)
Length = 395
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 85/166 (51%), Gaps = 8/166 (4%)
Query: 44 QVLYIDIDVHHGDGVEEAFYFTDRVMTVSFH-KYGDF--FFPGTGDIKDIGEREGKYYAI 100
+V +DIDVH+G+G E FY TD V+T+S H K+G + P +G + + GE G Y +
Sbjct: 193 RVAVVDIDVHYGNGTAEGFYHTDSVLTISLHMKHGSWGPSHPQSGLVDETGEGRGLGYNL 252
Query: 101 NIPLKDGIDDSGFTRLFKTVIAKVVETYLPGAIVLQCGADSLARDRLGCFNLSIEGHAEC 160
NIPL +G D+G+ ++ +E + P +V G DS A D G L+++G+ +
Sbjct: 253 NIPLPNGSGDAGYEYAMNELVVPAIEKFRPELMVFVVGQDSSAFDPNGRQCLTMDGYRKI 312
Query: 161 VKFVKKF-----NIPLLVTGGGGYTKENVARCWAVETGVLLDTELP 201
+ ++ N +L+ GGY A C +L+ + P
Sbjct: 313 GQIMRGMADQHSNGQILIVQEGGYHITYSAYCLHATLEGVLNLQAP 358
>Os07g0164100 Histone deacetylase superfamily protein
Length = 623
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 84/156 (53%), Gaps = 3/156 (1%)
Query: 44 QVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKYGD-FFFPGTGDIKDIGEREGKYYAINI 102
+VL +D DVHHG+G +E F + V+ +S H++ D F+PGTG ++G +G+ +++NI
Sbjct: 360 KVLIVDWDVHHGNGTQEIFDGDNSVLYISLHRHEDGSFYPGTGAANEVGVMDGQGFSVNI 419
Query: 103 PL-KDGIDDSGFTRLFKTVIAKVVETYLPGAIVLQCGADSLARDRLGCFNLSIEGHAECV 161
P + G+ D+ + FK V+ + + P ++ G D+ D LGC +++ G++
Sbjct: 420 PWSRGGVGDNDYIFAFKHVVLPIAAEFAPDITIISAGFDAARGDPLGCCDVTPAGYSRMA 479
Query: 162 KFVKKFNI-PLLVTGGGGYTKENVARCWAVETGVLL 196
+ + LLV GGY +++ VLL
Sbjct: 480 SMLTACSQGKLLVILEGGYNLRSISSSATEVVKVLL 515
>Os07g0602200 Similar to HDA1
Length = 695
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 85/169 (50%), Gaps = 7/169 (4%)
Query: 44 QVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHK--YGDFFFPGTGDIKD--IGEREGKYYA 99
++L +D DVHHG+G ++ FY RV+ S H+ YG F+P GD IGE +GK Y
Sbjct: 177 KILIVDWDVHHGNGTQKMFYSDPRVLFFSVHRFDYGS-FYPAEGDASYCFIGEGDGKGYN 235
Query: 100 INIPLKDG-IDDSGFTRLFKTVIAKVVETYLPGAIVLQCGADSLARDRLGCFNLSIEGHA 158
IN+P + G D+ + + V+ V E + P +++ G D+ D LG ++ G+A
Sbjct: 236 INVPWEHGKCGDADYIAAWDHVLLPVAEAFNPDIVLVSAGFDAALGDPLGGCCITPNGYA 295
Query: 159 ECVKFVKKFNIPLLVTG-GGGYTKENVARCWAVETGVLLDTELPNEIPD 206
+ + F +V GGY ++A + VLL + + PD
Sbjct: 296 LLLTKLLGFAQGRIVMALEGGYNLRSIANSVSACAKVLLGDKFRFDTPD 344
>Os12g0182700 Histone deacetylase superfamily protein
Length = 443
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 57/110 (51%), Gaps = 2/110 (1%)
Query: 44 QVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKYGDFFFPGTGDIKDIGEREGKYYAINIP 103
+V+ ID DVHHG+G +AFY + +S H+ G + PGTG I +G+ G+ +N+P
Sbjct: 252 RVMIIDFDVHHGNGTCDAFYEDPDIFFLSTHQLGSY--PGTGKIHQVGQGNGEGTTLNLP 309
Query: 104 LKDGIDDSGFTRLFKTVIAKVVETYLPGAIVLQCGADSLARDRLGCFNLS 153
L G D F VIA + + P I++ G D+ A D L +
Sbjct: 310 LPGGSGDYAMRCAFDEVIAPAAQRFKPDIILVSAGYDAHALDPLAGLQFT 359
>AK110273
Length = 744
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 2/114 (1%)
Query: 44 QVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKYG-DFFFPGTGDIKDIGEREGKYYAINI 102
+VL +D DVHHG+G + F V+ +S H+Y F+PGTG ++G G Y +N+
Sbjct: 384 RVLILDWDVHHGNGTQHIFEADPSVLYMSLHRYDRGNFYPGTGGADEVGHGRGAGYTVNV 443
Query: 103 PLKDG-IDDSGFTRLFKTVIAKVVETYLPGAIVLQCGADSLARDRLGCFNLSIE 155
P G I + + + VI + + P I++ G D+ D +G L+ E
Sbjct: 444 PWDAGNIGNGDYMAAMEQVILPIAREFAPNLIIISAGFDAADGDPIGGCCLTPE 497
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.141 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,915,526
Number of extensions: 359242
Number of successful extensions: 561
Number of sequences better than 1.0e-10: 14
Number of HSP's gapped: 547
Number of HSP's successfully gapped: 14
Length of query: 309
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 208
Effective length of database: 11,762,187
Effective search space: 2446534896
Effective search space used: 2446534896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)