BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0393500 Os04g0393500|Os04g0393500
(135 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0393500 Glutaredoxin-like, plant II family protein 149 4e-37
Os02g0512400 Similar to Glutaredoxin 142 9e-35
Os12g0538600 Glutaredoxin-like, plant II family protein 97 4e-21
Os11g0655900 Glutaredoxin-like, plant II family protein 93 6e-20
Os01g0936000 Similar to AT.I.24-1 protein (Fragment) 90 4e-19
Os11g0656000 Glutaredoxin-like, plant II family protein 83 6e-17
Os12g0538700 Similar to AT.I.24-1 protein (Fragment) 82 8e-17
Os11g0656801 Similar to Glutaredoxin 80 4e-16
Os01g0667900 Glutaredoxin-like, plant II family protein 80 4e-16
Os11g0656400 79 9e-16
Os01g0241400 Glutaredoxin-like, plant II family protein 74 3e-14
Os07g0151100 71 3e-13
>Os04g0393500 Glutaredoxin-like, plant II family protein
Length = 135
Score = 149 bits (377), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 85/135 (62%), Positives = 85/135 (62%)
Query: 1 MQYGAAAAEQAWYMPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCMCHAVKRLFC 60
MQYGAAAAEQAWYMP CCMCHAVKRLFC
Sbjct: 1 MQYGAAAAEQAWYMPAAAMVVAAAAETAAERVERLASESAVVVFSVSSCCMCHAVKRLFC 60
Query: 61 GMGVHPAVHELDLDPRGRDLEXXXXXXXXXXXXXXXXXPVVFIGGKLVGAMDRVMAAHIN 120
GMGVHPAVHELDLDPRGRDLE PVVFIGGKLVGAMDRVMAAHIN
Sbjct: 61 GMGVHPAVHELDLDPRGRDLERALARLVGAGGAAAAAVPVVFIGGKLVGAMDRVMAAHIN 120
Query: 121 GSLVPLLKEAGALWL 135
GSLVPLLKEAGALWL
Sbjct: 121 GSLVPLLKEAGALWL 135
>Os02g0512400 Similar to Glutaredoxin
Length = 135
Score = 142 bits (357), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 82/138 (59%), Positives = 83/138 (60%), Gaps = 6/138 (4%)
Query: 1 MQYGAAAAEQAWYMPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCMCHAVKRLFC 60
MQYGAAA EQAWYMP CCMCHAVKRLFC
Sbjct: 1 MQYGAAA-EQAWYMPAAAPAPMVESAVARVERLASESAVVVFSVSS--CCMCHAVKRLFC 57
Query: 61 GMGVHPAVHELDLDPRGRDLEXXXXXXXXX---XXXXXXXXPVVFIGGKLVGAMDRVMAA 117
GMGVHP VHELDLDPRGR+LE PVVFIGGKLVGAMDRVMAA
Sbjct: 58 GMGVHPTVHELDLDPRGRELERALARLVGYGGPAAASPPVVPVVFIGGKLVGAMDRVMAA 117
Query: 118 HINGSLVPLLKEAGALWL 135
HINGSLVPLLKEAGALWL
Sbjct: 118 HINGSLVPLLKEAGALWL 135
>Os12g0538600 Glutaredoxin-like, plant II family protein
Length = 103
Score = 97.1 bits (240), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 58/87 (66%), Gaps = 4/87 (4%)
Query: 49 CCMCHAVKRLFCGMGVHPAVHELDLDPRGRDLEXXXXXXXXXXXXXXXXXPVVFIGGKLV 108
CCMCH V RLFC +GV+ VHELD DPRG+++E PVVFIGGKLV
Sbjct: 21 CCMCHTVTRLFCDLGVNALVHELDQDPRGKEMERALLKLLGRGPPV----PVVFIGGKLV 76
Query: 109 GAMDRVMAAHINGSLVPLLKEAGALWL 135
G +++M+ H+ G L+P+LK AGALWL
Sbjct: 77 GGTNKIMSLHLGGELIPMLKNAGALWL 103
>Os11g0655900 Glutaredoxin-like, plant II family protein
Length = 108
Score = 92.8 bits (229), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 47/88 (53%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
Query: 49 CCMCHAVKRLFCG-MGVHPAVHELDLDPRGRDLEXXXXXXXXXXXXXXXXXPVVFIGGKL 107
C MCHAV L G +GV+ AVHELD DPRGRD+E P VF+GG L
Sbjct: 21 CGMCHAVTSLLVGELGVNAAVHELDKDPRGRDMERELARRLNGGGGGGRALPAVFVGGNL 80
Query: 108 VGAMDRVMAAHINGSLVPLLKEAGALWL 135
VG +RVM+ H+ G LVP+LK AGALWL
Sbjct: 81 VGGANRVMSLHLAGELVPMLKNAGALWL 108
>Os01g0936000 Similar to AT.I.24-1 protein (Fragment)
Length = 125
Score = 90.1 bits (222), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 55/87 (63%), Gaps = 4/87 (4%)
Query: 49 CCMCHAVKRLFCGMGVHPAVHELDLDPRGRDLEXXXXXXXXXXXXXXXXXPVVFIGGKLV 108
C MCH VK LF +GV AVHE+D DP G+D+E P VFIGGKLV
Sbjct: 22 CFMCHVVKTLFSELGVSWAVHEVDKDPNGKDVERALAGMVGRTPPV----PAVFIGGKLV 77
Query: 109 GAMDRVMAAHINGSLVPLLKEAGALWL 135
G D+VM+ H+ G LVPLL+EAGALWL
Sbjct: 78 GPTDQVMSLHLAGKLVPLLREAGALWL 104
>Os11g0656000 Glutaredoxin-like, plant II family protein
Length = 109
Score = 82.8 bits (203), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 44/88 (50%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 49 CCMCHAVKRLFCGMGVHPAVHELDLDPRGRDLEXXXXXXXXXXXXXXX-XXPVVFIGGKL 107
CCMC AV L + V AVHELD DP G+++E P VFIGG L
Sbjct: 22 CCMCTAVTTLLGELAVSAAVHELDRDPLGKEMEKELARRLYGSSGRGGPAVPAVFIGGSL 81
Query: 108 VGAMDRVMAAHINGSLVPLLKEAGALWL 135
VG +VMA H+ G LVPLLK AGALWL
Sbjct: 82 VGGTSKVMAMHLKGELVPLLKSAGALWL 109
>Os12g0538700 Similar to AT.I.24-1 protein (Fragment)
Length = 104
Score = 82.4 bits (202), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 53/88 (60%), Gaps = 5/88 (5%)
Query: 49 CCMCHAVKRLFCGMGVHPAVHELDLDP-RGRDLEXXXXXXXXXXXXXXXXXPVVFIGGKL 107
C MCH V LF +GV AVHELD DP GRD+E P VFI GKL
Sbjct: 21 CPMCHTVVSLFSDLGVGAAVHELDRDPLHGRDMERDLARRLGRSPPV----PAVFIAGKL 76
Query: 108 VGAMDRVMAAHINGSLVPLLKEAGALWL 135
VG+ DRVM+ H+ G LVP+LK AGA+WL
Sbjct: 77 VGSTDRVMSLHLAGKLVPMLKAAGAIWL 104
>Os11g0656801 Similar to Glutaredoxin
Length = 109
Score = 80.5 bits (197), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 49 CCMCHAVKRLFCGMGVHPAVHELDLDPRGRDLEXXXXXXXXXXXXXXX-XXPVVFIGGKL 107
CCMC AV L + V AVHELD +P G+++E P VFIGG L
Sbjct: 22 CCMCTAVTTLLGELAVSAAVHELDREPLGKEMERELARRLYGSGGRGGPAVPAVFIGGSL 81
Query: 108 VGAMDRVMAAHINGSLVPLLKEAGALWL 135
VG+ +VMA H+ G LVP+LK AGALWL
Sbjct: 82 VGSTSKVMAMHLKGELVPMLKNAGALWL 109
>Os01g0667900 Glutaredoxin-like, plant II family protein
Length = 147
Score = 80.5 bits (197), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 53/87 (60%), Gaps = 8/87 (9%)
Query: 49 CCMCHAVKRLFCGMGVHPAVHELDLDPRGRDLEXXXXXXXXXXXXXXXXXPVVFIGGKLV 108
CC+ H VKRL G+GV+PAVHE+ + P VF+GGKL+
Sbjct: 69 CCLIHVVKRLLQGLGVNPAVHEVAGE--------AALKGVVPAGGEAAALPAVFVGGKLL 120
Query: 109 GAMDRVMAAHINGSLVPLLKEAGALWL 135
G +DR+MA HI+G LVP+LK+AGALWL
Sbjct: 121 GGLDRLMAVHISGELVPILKKAGALWL 147
>Os11g0656400
Length = 109
Score = 79.0 bits (193), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 49 CCMCHAVKRLFCGMGVHPAVHELDLDPRGRDLEXXXXXXXXXXXXXXX-XXPVVFIGGKL 107
CCMC AV L + V AVHELD +P G+++E P VFIGG L
Sbjct: 22 CCMCTAVTTLLGELAVSAAVHELDREPLGKEMERELARRLYGSGGRGGPAVPAVFIGGSL 81
Query: 108 VGAMDRVMAAHINGSLVPLLKEAGALWL 135
VG +VM H+ G LVP+LK AGALWL
Sbjct: 82 VGGTSKVMTVHLKGELVPMLKSAGALWL 109
>Os01g0241400 Glutaredoxin-like, plant II family protein
Length = 136
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 52/99 (52%), Gaps = 12/99 (12%)
Query: 49 CCMCHAVKRLFCGMGVHPAVHEL--DLDP----------RGRDLEXXXXXXXXXXXXXXX 96
CCM H +RL G G +PAV E+ D DP R R
Sbjct: 38 CCMAHVARRLLLGQGANPAVLEVGDDADPAALVDAALQARRRKDGGDKAAAGDGGGGAAV 97
Query: 97 XXPVVFIGGKLVGAMDRVMAAHINGSLVPLLKEAGALWL 135
P VFIGG+LVG +DR+MA H+ G LVP+LK+AGALWL
Sbjct: 98 AFPAVFIGGRLVGGLDRLMAMHMAGELVPVLKQAGALWL 136
>Os07g0151100
Length = 127
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 52/87 (59%), Gaps = 3/87 (3%)
Query: 49 CCMCHAVKRLFCGMGVHPAVHELDLDPRGRDLEXXXXXXXXXXXXXXXXXPVVFIGGKLV 108
CCMCH VKRL G+GV PAV+ELD D++ V +L+
Sbjct: 44 CCMCHVVKRLLLGLGVGPAVYELDQLAAAADIQAALSQLLPPGQPPVPVVFVGG---RLL 100
Query: 109 GAMDRVMAAHINGSLVPLLKEAGALWL 135
G +++VMA HING+LVPLLK+AGALWL
Sbjct: 101 GGVEKVMACHINGTLVPLLKQAGALWL 127
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.327 0.141 0.475
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,124,113
Number of extensions: 69289
Number of successful extensions: 186
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 12
Length of query: 135
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 45
Effective length of database: 12,336,541
Effective search space: 555144345
Effective search space used: 555144345
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 150 (62.4 bits)