BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0810600 Os03g0810600|AK101920
(642 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0810600 Ras GTPase family protein 1212 0.0
Os01g0843300 Ras small GTPase, Rab type family protein 840 0.0
Os03g0810700 283 4e-76
Os02g0312600 Similar to Small GTP-binding protein (Fragment) 76 8e-14
Os02g0120800 Similar to Small GTP-binding protein (Fragment) 74 3e-13
AK100585 73 7e-13
Os05g0513800 Small GTP-binding protein OsRac2 72 2e-12
Os02g0834000 Similar to Rop4 small GTP binding protein 70 6e-12
Os01g0229400 Small GTP-binding protein OsRac1 70 7e-12
Os06g0234200 Similar to RAC-like GTP binding protein ARAC8 ... 66 6e-11
>Os03g0810600 Ras GTPase family protein
Length = 642
Score = 1212 bits (3137), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 595/631 (94%), Positives = 595/631 (94%)
Query: 12 GKQGVRVVVIGDPGTGKSSLVVSVATEAFPENVPRVMPPTRLPADYFPDRVPITIVDTSS 71
GKQGVRVVVIGDPGTGKSSLVVSVATEAFPENVPRVMPPTRLPADYFPDRVPITIVDTSS
Sbjct: 12 GKQGVRVVVIGDPGTGKSSLVVSVATEAFPENVPRVMPPTRLPADYFPDRVPITIVDTSS 71
Query: 72 SPEHRAKLIAECQAADAVVLTYACDRPATLERLSTFWLPELRRLQLKAPVIVVGCKLDLR 131
SPEHRAKLIAECQAADAVVLTYACDRPATLERLSTFWLPELRRLQLKAPVIVVGCKLDLR
Sbjct: 72 SPEHRAKLIAECQAADAVVLTYACDRPATLERLSTFWLPELRRLQLKAPVIVVGCKLDLR 131
Query: 132 DEQQVSLEQVMAPIMQTFREIETCIECSALRQIQVPEVFYYAQKAVLHPTAPLFDQEAQS 191
DEQQVSLEQVMAPIMQTFREIETCIECSALRQIQVPEVFYYAQKAVLHPTAPLFDQEAQS
Sbjct: 132 DEQQVSLEQVMAPIMQTFREIETCIECSALRQIQVPEVFYYAQKAVLHPTAPLFDQEAQS 191
Query: 192 LKPRCVRALKRIFILCDHDRDGALSDVELNDFQVKCFNAPLQPTEIAGVKRVVQEKMPEG 251
LKPRCVRALKRIFILCDHDRDGALSDVELNDFQVKCFNAPLQPTEIAGVKRVVQEKMPEG
Sbjct: 192 LKPRCVRALKRIFILCDHDRDGALSDVELNDFQVKCFNAPLQPTEIAGVKRVVQEKMPEG 251
Query: 252 VNDNGLTLTGFLFLHALFIEKGRLETTWTVLRKFGYDNEIKLRDDLIPTIKRAPDQTLEL 311
VNDNGLTLTGFLFLHALFIEKGRLETTWTVLRKFGYDNEIKLRDDLIPTIKRAPDQTLEL
Sbjct: 252 VNDNGLTLTGFLFLHALFIEKGRLETTWTVLRKFGYDNEIKLRDDLIPTIKRAPDQTLEL 311
Query: 312 TGQAIDFLRGIFNMFDTXXXXXXXXXXXXXXFSTAPENPWSNNPYVDCAERNVLGGLSLE 371
TGQAIDFLRGIFNMFDT FSTAPENPWSNNPYVDCAERNVLGGLSLE
Sbjct: 312 TGQAIDFLRGIFNMFDTDNDDALLPAELDDLFSTAPENPWSNNPYVDCAERNVLGGLSLE 371
Query: 372 GFLSKWALMTLLDPANSFANLIYVGYSGDFGSAFTTMRKRRVDRKKQQTQRNVFQCYVFG 431
GFLSKWALMTLLDPANSFANLIYVGYSGDFGSAFTTMRKRRVDRKKQQTQRNVFQCYVFG
Sbjct: 372 GFLSKWALMTLLDPANSFANLIYVGYSGDFGSAFTTMRKRRVDRKKQQTQRNVFQCYVFG 431
Query: 432 PRGAGKTALLQSFLGRQPSDALPMNGERFAANTVELSGSRKTLVFREIPEDDVRPLLADR 491
PRGAGKTALLQSFLGRQPSDALPMNGERFAANTVELSGSRKTLVFREIPEDDVRPLLADR
Sbjct: 432 PRGAGKTALLQSFLGRQPSDALPMNGERFAANTVELSGSRKTLVFREIPEDDVRPLLADR 491
Query: 492 ESLAPCDVAVFVYDSCDEFSWQRTRDLLVEVATHGENTGYEVPCLIVAAKDDLDQSPLAL 551
ESLAPCDVAVFVYDSCDEFSWQRTRDLLVEVATHGENTGYEVPCLIVAAKDDLDQSPLAL
Sbjct: 492 ESLAPCDVAVFVYDSCDEFSWQRTRDLLVEVATHGENTGYEVPCLIVAAKDDLDQSPLAL 551
Query: 552 QESTRVSQDMGIEMPIPISVRLRDLNNIFCRIVHAAQQPHLSIPETEAGKTRRQYRQLLN 611
QESTRVSQDMGIEMPIPISVRLRDLNNIFCRIVHAAQQPHLSIPETEAGKTRRQYRQLLN
Sbjct: 552 QESTRVSQDMGIEMPIPISVRLRDLNNIFCRIVHAAQQPHLSIPETEAGKTRRQYRQLLN 611
Query: 612 RSLMXXXXXXXXXXXXXXXXXXXXXXKNTSS 642
RSLM KNTSS
Sbjct: 612 RSLMVVSVGAAVAVVGIAAYRVYAARKNTSS 642
>Os01g0843300 Ras small GTPase, Rab type family protein
Length = 597
Score = 840 bits (2170), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/603 (72%), Positives = 474/603 (78%), Gaps = 45/603 (7%)
Query: 12 GKQGVRVVVIGDPGTGKSSLVVSVATEAFPENVPRVMPPTRLPADYFPDRVPITIVDTSS 71
GKQ +RVVVIGDPGTGKSSLVVS ATEA + ++
Sbjct: 12 GKQSLRVVVIGDPGTGKSSLVVSAATEATSPAYCPPPASPSTTS-----PTASPSPSSTP 66
Query: 72 SPEHRAKLIAECQAADAVVLTYACDRPATLERLSTFWLPELRRLQLKAPVIVVGCKLDLR 131
PE R+KLIAECQ+AD VVLTYACD+PATLERLS+FW PELRRLQL+APVIVVGCKLDLR
Sbjct: 67 PPEQRSKLIAECQSADVVVLTYACDQPATLERLSSFWFPELRRLQLEAPVIVVGCKLDLR 126
Query: 132 DEQQVSLEQVMAPIMQTFREIETCIECSALRQIQVPEVFYYAQKAVLHPTAPLFDQEAQS 191
E+Q +L+ VMAPIM FREIETCIECSALRQI V EVFYYAQKAVL+PTAPLFDQEAQ
Sbjct: 127 GEEQGTLDAVMAPIMVAFREIETCIECSALRQILVYEVFYYAQKAVLYPTAPLFDQEAQM 186
Query: 192 LKPRCVRALKRIFILCDHDRDGALSDVELNDFQVKCFNAPLQPTEIAGVKRVVQEKMPEG 251
LK RC+RALKRIFILCDHDRDGA SDVELNDFQV CFNAPLQP EI GVKR +QEK+ EG
Sbjct: 187 LKLRCMRALKRIFILCDHDRDGAFSDVELNDFQVICFNAPLQPNEIIGVKRTIQEKLTEG 246
Query: 252 VNDNGLTLTGFLFLHALFIEKGRLETTWTVLRKFGYDNEIKLRDDLIPTIKRAPDQTLEL 311
VN+NGLTLTGFLFLH L I G+LETTWTVLRKFGYDNE+KLRDDLIP IKRAPDQ L
Sbjct: 247 VNENGLTLTGFLFLHTLIIGNGKLETTWTVLRKFGYDNELKLRDDLIPAIKRAPDQDGAL 306
Query: 312 TGQAIDFLRGIFNMFDTXXXXXXXXXXXXXXFSTAPENPWSNNPYVDCAERNVLGGLSLE 371
I+ L FSTAPENPWS++ Y +CAE NVLGGLS E
Sbjct: 307 QPAEINDL-----------------------FSTAPENPWSSHLYENCAENNVLGGLSFE 343
Query: 372 GFLSKWALMTLLDPANSFANLIYVGYSGDFGSAFTTMRKRRVDRKKQQTQRNVFQCYVFG 431
GF+SKW LMTL+ P+NSFANLIYVGY GDF SAFTT RKRRVDRKK+QTQRNVFQCYVFG
Sbjct: 344 GFISKWTLMTLIHPSNSFANLIYVGYPGDFDSAFTTTRKRRVDRKKKQTQRNVFQCYVFG 403
Query: 432 PRGAGKTALLQSFLGRQPSDALPMNGERFAANTVELSGSRKTLVFREIPEDDVRPLLADR 491
PR AGKTALLQSFL R S G+RKTLV REI E DV PLL+D+
Sbjct: 404 PRHAGKTALLQSFLKRYHS-----------------IGTRKTLVMREISEGDVGPLLSDK 446
Query: 492 ESLAPCDVAVFVYDSCDEFSWQRTRDLLVEVATHGENTGYEVPCLIVAAKDDLDQSPLAL 551
ESLAPCDVAV VYDS DE SWQR R+LLV+VAT G+NTGYEVPCLIVAAKDDLDQSPLAL
Sbjct: 447 ESLAPCDVAVIVYDSGDEVSWQRARELLVQVATRGKNTGYEVPCLIVAAKDDLDQSPLAL 506
Query: 552 QESTRVSQDMGIEMPIPISVRLRDLNNIFCRIVHAAQQPHLSIPETEAGKTRRQYRQLLN 611
Q+STRVS DMGIE PIPISVRLRDLNNIFCRIVHAAQQPHLSIPETEAGKT RQYRQLLN
Sbjct: 507 QDSTRVSHDMGIETPIPISVRLRDLNNIFCRIVHAAQQPHLSIPETEAGKTHRQYRQLLN 566
Query: 612 RSL 614
RSL
Sbjct: 567 RSL 569
>Os03g0810700
Length = 253
Score = 283 bits (723), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 151/268 (56%), Positives = 182/268 (67%), Gaps = 31/268 (11%)
Query: 12 GKQGVRVVVIGDPGTGKSSLVVSVATEAFPE---NVPRVMPPTRLPADYFPDRVPITIVD 68
K VRV VIGD GTGKSSLV ++AT FP+ V RV+PP RLP DYFP RVP+TIVD
Sbjct: 11 AKLDVRVAVIGDHGTGKSSLVATIATGRFPDQDDGVARVLPPARLPVDYFPARVPVTIVD 70
Query: 69 TSSSPEHRAKLIAECQAADAVVLTYACDRPATLERLSTFWLPELRRL-QLKAPVIVVGCK 127
TSS RP TLER++TFWLP++RRL Q K PVI+ GCK
Sbjct: 71 TSS-------------------------RPNTLERITTFWLPKIRRLLQSKVPVILAGCK 105
Query: 128 LDLRD-EQQVSLEQVMAPIMQTFREIETCIECSALRQIQVPEVFYYAQKAVLHPTAPLFD 186
+DL D +QQ LE V+ IM TFRE+E +ECSAL +I+V EVFY AQ AVL PT PLFD
Sbjct: 106 VDLSDKQQQAGLENVLDFIMCTFREVEIYLECSALHRIKVDEVFYCAQMAVLRPTTPLFD 165
Query: 187 QEAQSLKPRCVRALKRIFILCDHDRDGALSDVELNDFQVKCFNAPLQPTEIAGVKRVVQE 246
+ +S+KPRC+ A ++IF L D D+DGA+SD E+N F V+CF LQP EIA +KRVVQ+
Sbjct: 166 KATRSIKPRCMMAFQQIFSLYDRDKDGAVSDAEMNAFLVRCFKVSLQPAEIADMKRVVQQ 225
Query: 247 KMPEGVNDNGL-TLTGFLFLHALFIEKG 273
M VNDNGL T GFL+LH +FI KG
Sbjct: 226 HMIGCVNDNGLITFIGFLYLHVVFIAKG 253
>Os02g0312600 Similar to Small GTP-binding protein (Fragment)
Length = 197
Score = 75.9 bits (185), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 84/177 (47%), Gaps = 9/177 (5%)
Query: 16 VRVVVIGDPGTGKSSLVVSVATEAFPEN-VPRVMPPTRLPADYFPDRVPITIVDTSSSPE 74
++ V +GD GK+ +++S + FP + VP V + V + + DT+ +
Sbjct: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQED 66
Query: 75 HRAKLIAECQAADAVVLTYACDRPATLERLSTFWLPELRRLQLKAPVIVVGCKLDLRDEQ 134
+ + AD +L ++ A+ E + W+PELR P+++VG KLDLR+++
Sbjct: 67 YNRLRPLSYRGADVFLLAFSLISKASYENIHKKWIPELRHYAPNVPIVLVGTKLDLREDK 126
Query: 135 QVSLEQ-VMAPI-------MQTFREIETCIECSALRQIQVPEVFYYAQKAVLHPTAP 183
Q L+ +API ++ IECS+ Q V VF A K VL P P
Sbjct: 127 QFFLDHPGLAPISTAQGEELKRMIGAAAYIECSSKTQQNVKSVFDSAIKVVLCPPKP 183
>Os02g0120800 Similar to Small GTP-binding protein (Fragment)
Length = 197
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 83/172 (48%), Gaps = 9/172 (5%)
Query: 16 VRVVVIGDPGTGKSSLVVSVATEAFPEN-VPRVMPPTRLPADYFPDRVPITIVDTSSSPE 74
++ V +GD GK+ +++S + FP + VP V + V + + DT+ +
Sbjct: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQED 66
Query: 75 HRAKLIAECQAADAVVLTYACDRPATLERLSTFWLPELRRLQLKAPVIVVGCKLDLRDEQ 134
+ + AD +L ++ A+ E +S W+PEL+ P+I+VG KLDLRD++
Sbjct: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
Query: 135 QVSLEQVMAPIMQTFREIE--------TCIECSALRQIQVPEVFYYAQKAVL 178
Q ++ A + T + E IECS+ Q+ V VF A K VL
Sbjct: 127 QFFVDHPGAVPITTAQGEELRKQIGAPYYIECSSKTQLNVKGVFDAAIKVVL 178
>AK100585
Length = 197
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 82/172 (47%), Gaps = 9/172 (5%)
Query: 16 VRVVVIGDPGTGKSSLVVSVATEAFPEN-VPRVMPPTRLPADYFPDRVPITIVDTSSSPE 74
++ V +GD GK+ +++S + FP + VP V + V + + DT+ +
Sbjct: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQED 66
Query: 75 HRAKLIAECQAADAVVLTYACDRPATLERLSTFWLPELRRLQLKAPVIVVGCKLDLRDEQ 134
+ + AD +L ++ A+ E +S W+PEL+ P+I+VG KLDLRD++
Sbjct: 67 YNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
Query: 135 QVSLEQ-VMAPIMQTFRE-------IETCIECSALRQIQVPEVFYYAQKAVL 178
Q ++ + PI E IECS+ Q+ V VF A K VL
Sbjct: 127 QFFVDHPGVVPITTAQGEELRKQIGAPYYIECSSKTQLNVKGVFDAAIKVVL 178
>Os05g0513800 Small GTP-binding protein OsRac2
Length = 214
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 79/174 (45%), Gaps = 9/174 (5%)
Query: 16 VRVVVIGDPGTGKSSLVVSVATEAFPEN-VPRVMPPTRLPADYFPDRVPITIVDTSSSPE 74
++ V +GD GK+ +++ + FP + +P V + V + + DT+ +
Sbjct: 8 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNIVNLGLWDTAGQED 67
Query: 75 HRAKLIAECQAADAVVLTYACDRPATLERLSTFWLPELRRLQLKAPVIVVGCKLDLRDEQ 134
+ + AD VL ++ A+ E + W+PELRR P+++VG KLDLRD +
Sbjct: 68 YSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDHR 127
Query: 135 QVSLEQVMAPIMQTFREIE--------TCIECSALRQIQVPEVFYYAQKAVLHP 180
+ A + T + E IECS+ Q + VF A K VL P
Sbjct: 128 SYLADHPAASAITTAQGEELRKQIGAAAYIECSSKTQQNIKAVFDTAIKVVLQP 181
>Os02g0834000 Similar to Rop4 small GTP binding protein
Length = 195
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 82/172 (47%), Gaps = 11/172 (6%)
Query: 16 VRVVVIGDPGTGKSSLVVSVATEAFPEN-VPRVMPPTRLPADYFPDRVPITIVDTSSSPE 74
++ V +GD GK+ +++S + FP + VP V A+ D + + ++ +
Sbjct: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD--NFSANVVVDGSTVNLGLWDTAED 64
Query: 75 HRAKLIAECQAADAVVLTYACDRPATLERLSTFWLPELRRLQLKAPVIVVGCKLDLRDEQ 134
+ + AD +L ++ A+ E +S W+PELR P+I+VG KLDLRD++
Sbjct: 65 YNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELRHYAPGVPIILVGTKLDLRDDK 124
Query: 135 QVSLEQVMAPIMQTFREIE--------TCIECSALRQIQVPEVFYYAQKAVL 178
Q ++ A + T + E IECS+ Q + VF A K VL
Sbjct: 125 QFFVDHPGAVPISTAQGEELRKLIGAAAYIECSSKTQQNIKAVFDAAIKVVL 176
>Os01g0229400 Small GTP-binding protein OsRac1
Length = 214
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 9/174 (5%)
Query: 16 VRVVVIGDPGTGKSSLVVSVATEAFPEN-VPRVMPPTRLPADYFPDRVPITIVDTSSSPE 74
++ V +GD GK+ +++ FP + +P V V + + DT+ +
Sbjct: 11 IKCVTVGDGAVGKTCMLICYTCNKFPTDYIPTVFDNFSANVSVDGSVVNLGLWDTAGQED 70
Query: 75 HRAKLIAECQAADAVVLTYACDRPATLERLSTFWLPELRRLQLKAPVIVVGCKLDLRDEQ 134
+ + AD +L+++ A+ E + W+PELRR PV++VG KLDLR+++
Sbjct: 71 YSRLRPLSYRGADVFILSFSLISRASYENVQKKWMPELRRFAPGVPVVLVGTKLDLREDR 130
Query: 135 QVSLEQVMAPIMQTFREIE--------TCIECSALRQIQVPEVFYYAQKAVLHP 180
+ + I+ T + E IECS+ Q + VF A K VL P
Sbjct: 131 AYLADHPASSIITTEQGEELRKLIGAVAYIECSSKTQRNIKAVFDTAIKVVLQP 184
>Os06g0234200 Similar to RAC-like GTP binding protein ARAC8 (GTPase protein
ROP10)
Length = 215
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 83/176 (47%), Gaps = 13/176 (7%)
Query: 16 VRVVVIGDPGTGKSSLVVSVATEAFPEN-VPRVMPPTRLPADYFPD--RVPITIVDTSSS 72
++ V +GD GK+ +++ + FP + VP V A+ D V + + DT+
Sbjct: 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYVPTVF--DNFSANVVVDGTTVNLGLWDTAGQ 66
Query: 73 PEHRAKLIAECQAADAVVLTYACDRPATLERLSTFWLPELRRLQLKAPVIVVGCKLDLRD 132
++ + AD VL ++ A+ E + WLPEL+ P+++VG KLDLR+
Sbjct: 67 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVMKKWLPELQHYAPGVPIVLVGTKLDLRE 126
Query: 133 EQQVSLEQ-VMAPIMQTFRE------IETC-IECSALRQIQVPEVFYYAQKAVLHP 180
++ L+ + P+ E TC IECS+ Q V VF A K V+ P
Sbjct: 127 DKHYLLDHPSLVPVTTAQGEELRKHIGATCYIECSSKTQQNVKAVFDAAIKVVIKP 182
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.137 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 20,136,352
Number of extensions: 847042
Number of successful extensions: 2373
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 2355
Number of HSP's successfully gapped: 11
Length of query: 642
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 535
Effective length of database: 11,448,903
Effective search space: 6125163105
Effective search space used: 6125163105
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 159 (65.9 bits)