Os02g0834000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Rop4 small GTP binding protein.
FiT-DB / Search/ Help/ Sample detail
|
Os02g0834000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Rop4 small GTP binding protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.65 | 0.228 | 12.4 | -0.00525 | 0.108 | 0.968 | -0.409 | -2.47 | 0.0449 | 15.5 | 9.863 | 945 | -- | -- |
| 28.37 | 0.248 | 12.4 | 0.505 | 0.104 | 0.848 | -0.575 | -- | 0.19 | 17.6 | 2.944 | 1038 | -- | -- |
| 24.06 | 0.228 | 12.4 | 0.0182 | 0.096 | 0.993 | -- | -2.35 | 0.0495 | 13.7 | 7.554 | 892 | -- | -- |
| 28.53 | 0.249 | 12.4 | 0.479 | 0.114 | 0.933 | -- | -- | 0.167 | 15.3 | 5.866 | 1009 | -- | -- |
| 24.5 | 0.231 | 12.4 | 0.0336 | -- | 0.947 | -- | -2.41 | 0.0539 | -- | 4.191 | 822 | -- | -- |
| 40.88 | 0.3 | 12.3 | 0.72 | 0.147 | -- | -0.462 | -- | 0.324 | 19.8 | -- | -- | -- | -- |
| 41.48 | 0.302 | 12.3 | 0.732 | 0.147 | -- | -- | -- | 0.323 | 20.2 | -- | -- | -- | -- |
| 29.21 | 0.252 | 12.4 | 0.474 | -- | 0.927 | -- | -- | 0.177 | -- | 6.189 | 896 | -- | -- |
| 29.49 | 0.253 | 12.4 | -- | 0.124 | 1.06 | -- | -- | 0.00391 | 19 | 10.38 | 8009 | -- | -- |
| 42.67 | 0.305 | 12.3 | 0.73 | -- | -- | -- | -- | 0.321 | -- | -- | -- | -- | -- |
| 55.59 | 0.349 | 12.4 | -- | 0.143 | -- | -- | -- | 0.241 | 20.5 | -- | -- | -- | -- |
| 30.3 | 0.256 | 12.4 | -- | -- | 1.07 | -- | -- | 0.00246 | -- | -7.564 | 7896 | -- | -- |
| 56.74 | 0.352 | 12.4 | -- | -- | -- | -- | -- | 0.24 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.41 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 11 |
| 28 | 23.55 | temperature | 10 | 1440 | > th | dose dependent | sin | 20 | NA |
| 93 | 23.71 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 12 |
| 106 | 23.74 | temperature | 30 | 1440 | < th | dose dependent | rect. | 9 | 13 |
| 113 | 23.75 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 19 |
| 190 | 23.86 | temperature | 30 | 1440 | < th | dose dependent | sin | 20 | NA |
| 250 | 23.92 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 4 |
| 330 | 23.99 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 23 |
| 367 | 24.04 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 416 | 24.08 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 21 |
| 478 | 24.13 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 23 |
| 479 | 24.13 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 23 |
| 507 | 24.15 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 550 | 24.18 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 22 |
| 566 | 24.19 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 568 | 24.20 | temperature | 15 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 638 | 24.24 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 23 |
| 738 | 24.31 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 754 | 24.32 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 796 | 24.34 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 23 |
| 833 | 24.36 | temperature | 30 | 720 | < th | dose dependent | rect. | 10 | 23 |
| 834 | 24.37 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 936 | 24.44 | temperature | 25 | 4320 | < th | dose independent | rect. | 16 | 2 |
| 987 | 24.47 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 3 |