Os01g0229400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Small GTP-binding protein OsRac1.
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Os01g0229400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Small GTP-binding protein OsRac1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 190.8 | 0.649 | 7.9 | -3.5 | 1.06 | 3.28 | 0.674 | 2.7 | -0.631 | 12.5 | 7.371 | 5818 | -- | -- |
| 197.84 | 0.655 | 8.01 | -3.96 | 1.03 | 3.12 | 0.583 | -- | -0.754 | 12.8 | 11.58 | 5820 | -- | -- |
| 192.45 | 0.646 | 7.9 | -3.47 | 1.06 | 3.27 | -- | 2.68 | -0.623 | 12.8 | 8.768 | 5806 | -- | -- |
| 195.8 | 0.652 | 7.99 | -3.9 | 1.08 | 2.6 | -- | -- | -0.762 | 12.8 | 17.67 | 5780 | -- | -- |
| 255.49 | 0.749 | 7.97 | -3.2 | -- | 3.37 | -- | 0.0212 | -0.571 | -- | 8.768 | 5806 | -- | -- |
| 358.82 | 0.888 | 7.85 | -2.58 | 0.972 | -- | 0.573 | -- | -0.11 | 12.3 | -- | -- | -- | -- |
| 360 | 0.889 | 7.85 | -2.56 | 0.973 | -- | -- | -- | -0.106 | 12.6 | -- | -- | -- | -- |
| 253.39 | 0.745 | 7.97 | -3.17 | -- | 2.9 | -- | -- | -0.57 | -- | 17.67 | 5780 | -- | -- |
| 463.55 | 1 | 7.78 | -- | 1.15 | 1.27 | -- | -- | 0.0831 | 12.8 | 25.16 | 1386 | -- | -- |
| 419.4 | 0.957 | 7.86 | -2.59 | -- | -- | -- | -- | -0.123 | -- | -- | -- | -- | -- |
| 532.14 | 1.08 | 7.78 | -- | 1.01 | -- | -- | -- | 0.178 | 12.7 | -- | -- | -- | -- |
| 505.2 | 1.05 | 7.86 | -- | -- | 2.09 | -- | -- | -0.112 | -- | 17.67 | 5780 | -- | -- |
| 596.32 | 1.14 | 7.8 | -- | -- | -- | -- | -- | 0.164 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 176.95 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 2 | 178.38 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 16 | 14 |
| 4 | 178.97 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 16 | 8 |
| 6 | 178.99 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 16 | 5 |
| 22 | 181.67 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 23 | 181.74 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 25 | 181.90 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 27 | 182.29 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 28 | 182.29 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 29 | 182.30 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 30 | 182.39 | radiation | 1.0 | 14400 | > th | dose dependent | rect. | 17 | 13 |
| 31 | 182.43 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 17 | 5 |
| 62 | 183.25 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 6 |
| 71 | 183.63 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 105 | 184.45 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 17 | 13 |
| 120 | 184.82 | radiation | 1.0 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 131 | 184.85 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 150 | 185.19 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 174 | 185.60 | radiation | 10.0 | 14400 | > th | dose dependent | rect. | 16 | 15 |
| 175 | 185.61 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 18 | 4 |
| 185 | 185.73 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 17 | 7 |
| 191 | 185.83 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 17 | 4 |
| 217 | 186.12 | radiation | 10.0 | 14400 | < th | dose independent | sin | 14 | NA |
| 243 | 186.60 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 244 | 186.64 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 17 | 18 |
| 291 | 187.34 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 17 | 18 |
| 340 | 187.70 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 8 | 22 |
| 341 | 187.72 | radiation | 1.0 | 14400 | > th | dose independent | sin | 15 | NA |
| 380 | 188.09 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 8 | 22 |
| 487 | 188.87 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 8 | 13 |
| 489 | 188.87 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 8 | 16 |
| 574 | 189.22 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 8 | 11 |
| 584 | 189.22 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 614 | 189.39 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 629 | 189.42 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 9 | 14 |
| 632 | 189.42 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 16 | 6 |
| 675 | 189.71 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 19 | NA |
| 725 | 189.89 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 9 | 15 |
| 751 | 189.96 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 5 | 16 |
| 758 | 189.97 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 5 | 14 |
| 769 | 190.00 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 5 | 22 |
| 775 | 190.01 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 2 | 18 |
| 801 | 190.03 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 808 | 190.05 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 23 | 22 |
| 813 | 190.06 | radiation | 1.0 | 14400 | < th | dose independent | no | NA | NA |
| 814 | 190.06 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 23 | 20 |
| 823 | 190.06 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 20 | 23 |
| 838 | 190.10 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 19 | 12 |
| 877 | 190.29 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 19 | 5 |
| 878 | 190.30 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 17 | 8 |
| 897 | 190.40 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 17 | 7 |
| 919 | 190.47 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 947 | 190.58 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 5 | 14 |
| 957 | 190.60 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 19 | 9 |
| 984 | 190.67 | radiation | 1.0 | 14400 | > th | dose independent | no | NA | NA |