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Os02g0120800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Small GTP-binding protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.44 (0.0476) R2 : 0.738
β1 : -5.02 (0.174) R2dD : 0.499 R2D : 0.372
β2 : 2 (0.117) R2dC : 0.173 R2C : 0.102
β3 : 2.17 (0.138) R2dE : 0.147 R2E : 0.0348
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.25 (0.102) R2dN8 : 0.118 R2N8 : -0.0064
σ : 0.889
deviance : 364.21
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C
peak time of C : 9.8
E
wheather : humidity
threshold : 71.2
memory length : 1126
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 7.83
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
357.34 0.888 7.42 -4.77 1.98 2.06 -0.399 1.78 -1.21 9.75 71.23 1138 7.98 --
362.67 0.887 7.43 -5.02 2.02 2.16 -0.611 -- -1.25 9.79 71 1126 7.95 --
357.9 0.881 7.42 -4.78 1.98 2.06 -- 1.9 -1.21 9.76 71.24 1136 7.89 --
364.21 0.889 7.44 -5.02 2 2.17 -- -- -1.25 9.8 71.2 1126 7.83 --
537.55 1.08 7.47 -4.69 -- 2.18 -- 2.09 -1.2 -- 72.85 1313 7.03 --
534.08 1.08 7.42 -4.84 1.92 -- -0.572 -- -1.14 8.41 -- -- -- --
535.1 1.08 7.42 -4.86 1.93 -- -- -- -1.14 8.37 -- -- -- --
533.06 1.08 7.47 -4.85 -- 1.91 -- -- -1.14 -- 96.72 1241 7.91 --
1001.1 1.47 7.4 -- 2 2.34 -- -- -1.06 9.57 72 2563 8.03 --
741.4 1.27 7.47 -4.85 -- -- -- -- -1.12 -- -- -- -- --
1156.81 1.59 7.29 -- 1.91 -- -- -- -0.604 8.56 -- -- -- --
901.19 1.4 7.53 -- -- 3.6 -- -- -1.73 -- 66.06 30127 7.95 --
1360.81 1.72 7.34 -- -- -- -- -- -0.587 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 377.55 radiation 20 1440 > th dose independent rect. 16 15
2 378.54 humidity 80 1440 < th dose dependent rect. 16 6
6 379.39 radiation 20 1440 > th dose dependent rect. 16 15
8 379.82 radiation 20 1440 > th dose dependent rect. 16 1
23 380.27 radiation 20 1440 < th dose independent rect. 16 15
26 380.53 humidity 80 1440 < th dose dependent rect. 16 15
29 380.76 radiation 20 1440 > th dose independent rect. 16 1
47 381.25 radiation 20 1440 < th dose independent rect. 16 3
49 381.35 radiation 20 1440 < th dose independent rect. 16 13
51 381.42 humidity 70 1440 < th dose independent sin 13 NA
52 381.42 temperature 30 1440 > th dose dependent rect. 12 7
66 381.44 radiation 20 1440 < th dose independent rect. 16 1
73 381.59 temperature 30 1440 > th dose independent rect. 16 3
106 381.81 temperature 30 1440 < th dose independent rect. 16 4
116 381.91 temperature 30 1440 < th dose independent rect. 16 13
117 381.92 humidity 70 1440 < th dose independent rect. 15 16
134 381.98 temperature 30 1440 > th dose dependent sin 17 NA
138 382.03 humidity 70 1440 < th dose independent rect. 15 5
150 382.05 temperature 30 1440 < th dose independent rect. 16 16
186 382.57 temperature 30 1440 > th dose dependent rect. 13 3
188 382.61 humidity 80 1440 < th dose dependent sin 14 NA
213 383.00 temperature 30 1440 > th dose dependent no NA NA
306 383.11 temperature 30 1440 > th dose dependent rect. 17 23
307 383.15 temperature 30 1440 < th dose independent rect. 17 20
314 383.34 temperature 30 1440 > th dose dependent rect. 15 23
335 383.55 humidity 70 1440 > th dose independent sin 13 NA
347 384.07 temperature 30 1440 > th dose independent rect. 17 20
366 384.14 humidity 70 14400 < th dose independent rect. 19 1
421 384.53 temperature 30 1440 > th dose independent sin 12 NA
447 384.88 temperature 30 1440 < th dose independent sin 12 NA
480 385.58 humidity 70 14400 > th dose independent rect. 19 1
495 385.88 humidity 70 1440 > th dose independent rect. 15 16
496 385.91 humidity 70 1440 > th dose independent rect. 15 14
500 386.04 humidity 70 1440 > th dose independent rect. 15 5
508 386.14 humidity 70 1440 > th dose independent rect. 15 10
519 386.37 temperature 30 1440 < th dose independent rect. 9 10
520 386.37 temperature 30 1440 < th dose independent rect. 9 20
524 386.39 temperature 30 1440 < th dose independent rect. 9 22
537 386.55 temperature 30 1440 > th dose independent rect. 9 10
621 386.99 temperature 30 1440 < th dose independent rect. 9 4
624 387.03 humidity 70 14400 < th dose independent rect. 18 13
630 387.19 temperature 30 1440 > th dose independent rect. 11 1
635 387.27 humidity 70 1440 > th dose independent rect. 18 11
639 387.31 humidity 70 1440 > th dose independent rect. 18 13
655 387.39 humidity 70 1440 < th dose independent rect. 18 13
674 387.47 humidity 70 1440 < th dose independent rect. 18 2
689 387.49 humidity 70 14400 > th dose independent rect. 19 12
692 387.53 humidity 70 1440 > th dose independent rect. 18 2
703 387.66 temperature 30 1440 > th dose independent rect. 10 3
707 387.70 temperature 30 1440 < th dose independent rect. 2 17
727 387.75 temperature 30 1440 < th dose independent rect. 6 23
729 387.76 temperature 30 1440 < th dose independent rect. 6 13
767 387.80 temperature 30 1440 < th dose independent no NA NA
786 387.83 temperature 30 1440 < th dose independent rect. 4 23
829 388.04 temperature 30 1440 > th dose independent no NA NA
941 388.11 radiation 30 1440 > th dose independent rect. 15 17
942 388.13 humidity 70 14400 > th dose independent rect. 19 10
950 388.28 humidity 70 14400 > th dose independent rect. 19 4
992 389.02 humidity 80 1440 < th dose dependent rect. 16 1