Os06g0234200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RAC-like GTP binding protein ARAC8 (GTPase protein ROP10).
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Os06g0234200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to RAC-like GTP binding protein ARAC8 (GTPase protein ROP10).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 120.67 | 0.516 | 7.53 | 0.332 | 2.81 | -3.41 | 2.44 | -0.074 | 0.243 | 5.65 | 1.02 | 722 | -- | -- |
| 120.66 | 0.512 | 7.53 | 0.329 | 2.8 | -3.4 | 2.39 | -- | 0.243 | 5.66 | 1.02 | 722 | -- | -- |
| 121.24 | 0.513 | 7.56 | 0.285 | 2.56 | -3.15 | -- | 2.85 | 0.213 | 5.84 | 1.591 | 736 | -- | -- |
| 133.27 | 0.538 | 7.54 | 0.354 | 2.55 | -3.18 | -- | -- | 0.255 | 5.94 | 1.02 | 752 | -- | -- |
| 147.23 | 0.565 | 7.65 | -0.166 | -- | -1.41 | -- | 2.55 | -0.0903 | -- | 2.88 | 2989 | -- | -- |
| 138.42 | 0.552 | 7.56 | 0.654 | 0.0627 | -- | 2.16 | -- | 0.383 | 4.03 | -- | -- | -- | -- |
| 151.73 | 0.577 | 7.56 | 0.628 | 0.0926 | -- | -- | -- | 0.371 | 6.06 | -- | -- | -- | -- |
| 143.13 | 0.557 | 7.59 | 0.47 | -- | -0.814 | -- | -- | 0.233 | -- | 2.004 | 2872 | -- | -- |
| 132.48 | 0.536 | 7.54 | -- | 2.76 | -3.79 | -- | -- | 0.161 | 6.57 | 0.837 | 830 | -- | -- |
| 152.17 | 0.576 | 7.56 | 0.631 | -- | -- | -- | -- | 0.373 | -- | -- | -- | -- | -- |
| 162.12 | 0.596 | 7.58 | -- | 0.102 | -- | -- | -- | 0.301 | 5.75 | -- | -- | -- | -- |
| 136.76 | 0.545 | 7.63 | -- | -- | -1.51 | -- | -- | 0.0428 | -- | 2.14 | 1445 | -- | -- |
| 162.66 | 0.595 | 7.58 | -- | -- | -- | -- | -- | 0.303 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 114.39 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 2 | 114.56 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 4 |
| 3 | 114.92 | radiation | 1 | 720 | < th | dose dependent | rect. | 8 | 19 |
| 4 | 115.04 | wind | 7 | 43200 | > th | dose dependent | rect. | 14 | 6 |
| 9 | 115.36 | wind | 7 | 43200 | > th | dose dependent | rect. | 14 | 3 |
| 10 | 115.45 | wind | 7 | 43200 | > th | dose independent | rect. | 12 | 8 |
| 17 | 115.64 | radiation | 1 | 720 | < th | dose independent | sin | 14 | NA |
| 19 | 115.66 | wind | 7 | 43200 | < th | dose independent | rect. | 12 | 8 |
| 23 | 115.71 | humidity | 80 | 1440 | < th | dose independent | rect. | 3 | 12 |
| 28 | 115.78 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 2 |
| 30 | 115.78 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 2 |
| 47 | 115.96 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 59 | 116.14 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 63 | 116.16 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 22 |
| 97 | 116.43 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 19 |
| 102 | 116.48 | humidity | 80 | 1440 | < th | dose independent | sin | 3 | NA |
| 126 | 116.74 | humidity | 80 | 1440 | > th | dose independent | rect. | 3 | 13 |
| 140 | 116.84 | radiation | 1 | 720 | < th | dose dependent | sin | 15 | NA |
| 146 | 116.89 | wind | 7 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 164 | 117.00 | wind | 7 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 169 | 117.01 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 22 |
| 173 | 117.03 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 174 | 117.03 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 10 |
| 183 | 117.05 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 14 |
| 202 | 117.16 | humidity | 80 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 204 | 117.16 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 14 |
| 206 | 117.17 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 310 | 117.51 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 7 |
| 365 | 117.74 | humidity | 80 | 1440 | > th | dose independent | sin | 2 | NA |
| 421 | 117.87 | radiation | 1 | 720 | < th | dose dependent | sin | 0 | NA |
| 423 | 117.88 | radiation | 1 | 1440 | > th | dose independent | sin | 17 | NA |
| 434 | 117.90 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 442 | 117.92 | wind | 7 | 43200 | > th | dose independent | sin | 19 | NA |
| 461 | 117.94 | wind | 7 | 43200 | < th | dose independent | sin | 19 | NA |
| 468 | 117.95 | wind | 7 | 43200 | > th | dose independent | rect. | 16 | 4 |
| 472 | 117.96 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 10 |
| 492 | 117.97 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 17 |
| 596 | 118.16 | wind | 7 | 43200 | < th | dose independent | rect. | 16 | 4 |
| 598 | 118.16 | radiation | 1 | 720 | < th | dose independent | rect. | 4 | 16 |
| 705 | 118.41 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 14 |
| 753 | 118.48 | wind | 7 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 794 | 118.57 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 23 |
| 804 | 118.59 | wind | 9 | 14400 | < th | dose independent | rect. | 7 | 8 |
| 833 | 118.65 | radiation | 1 | 720 | < th | dose dependent | rect. | 4 | 16 |
| 841 | 118.67 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 14 |
| 863 | 118.73 | humidity | 80 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 894 | 118.81 | radiation | 1 | 720 | < th | dose independent | sin | 0 | NA |
| 990 | 119.02 | wind | 9 | 14400 | > th | dose independent | rect. | 11 | 1 |