Os02g0312600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Small GTP-binding protein (Fragment).
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Os02g0312600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Small GTP-binding protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 128.58 | 0.533 | 8.44 | -0.491 | 0.519 | 1.58 | 0.407 | -4.38 | -0.638 | 1.7 | 25.39 | 1249 | -- | -- |
| 134.85 | 0.541 | 8.31 | 0.581 | 0.543 | 1.15 | 0.324 | -- | -0.354 | 1.26 | 25.51 | 1253 | -- | -- |
| 129.14 | 0.529 | 8.44 | -0.496 | 0.526 | 1.58 | -- | -4.31 | -0.631 | 1.51 | 25.5 | 1264 | -- | -- |
| 134.58 | 0.54 | 8.3 | 0.619 | 0.524 | 1.14 | -- | -- | -0.358 | 1.41 | 25.4 | 1234 | -- | -- |
| 142.41 | 0.556 | 8.43 | -0.387 | -- | 1.78 | -- | -3.81 | -0.683 | -- | 24.35 | 1153 | -- | -- |
| 182.53 | 0.633 | 8.28 | 0.98 | 0.728 | -- | 0.426 | -- | -0.258 | 1.52 | -- | -- | -- | -- |
| 183.25 | 0.634 | 8.28 | 0.967 | 0.727 | -- | -- | -- | -0.26 | 1.43 | -- | -- | -- | -- |
| 147.97 | 0.567 | 8.32 | 0.558 | -- | 1.42 | -- | -- | -0.452 | -- | 24.12 | 1141 | -- | -- |
| 143.34 | 0.558 | 8.33 | -- | 0.491 | 1.35 | -- | -- | -0.516 | 1.47 | 24.14 | 1241 | -- | -- |
| 215.77 | 0.686 | 8.27 | 0.995 | -- | -- | -- | -- | -0.244 | -- | -- | -- | -- | -- |
| 207.87 | 0.674 | 8.31 | -- | 0.744 | -- | -- | -- | -0.367 | 1.48 | -- | -- | -- | -- |
| 155.54 | 0.581 | 8.34 | -- | -- | 1.55 | -- | -- | -0.54 | -- | 23.9 | 1144 | -- | -- |
| 241.9 | 0.726 | 8.3 | -- | -- | -- | -- | -- | -0.355 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 126.66 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 2 | 126.91 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 52 | 128.46 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 18 |
| 66 | 128.66 | temperature | 25 | 1440 | > th | dose dependent | sin | 17 | NA |
| 170 | 131.42 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 15 |
| 244 | 131.78 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 425 | 137.09 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 7 |
| 435 | 137.25 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 8 |
| 537 | 138.40 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 2 |
| 581 | 138.85 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 15 |
| 594 | 138.93 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 5 |
| 598 | 138.95 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 11 |
| 641 | 139.17 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 2 |
| 647 | 139.20 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 5 |
| 855 | 139.96 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 945 | 140.50 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 946 | 140.50 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 3 |
| 982 | 140.67 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 988 | 140.72 | radiation | 30 | 1440 | > th | dose independent | rect. | 7 | 1 |