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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0513800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Small GTP-binding protein OsRac2.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.05 (0.0455) R2 : 0.322
β1 : -3.09 (0.26) R2dD : 0.859 R2D : -0.109
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.17 (0.134) R2dE : 0.181 R2E : -0.127
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -4.49 (0.737) R2dD*E : 0.215 R2D*E : -0.481
γ1 : -0.681 (0.112) R2dN8 : 0.159 R2N8 : -0.195
σ : 0.67
deviance : 206.93
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 25.8
memory length : 1374
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
202.28 0.668 4.04 -3.12 0.217 1.15 0.927 -4.5 -0.696 7.01 25.7 1381 -- --
220.03 0.691 3.89 -1.81 0.185 0.725 1.01 -- -0.297 7.44 23 3033 -- --
202.35 0.663 4.05 -3.14 0.327 1.1 -- -4.48 -0.694 4.63 25.8 1408 -- --
218.93 0.689 3.9 -1.81 0.339 0.729 -- -- -0.303 5.7 23.3 1936 -- --
206.93 0.67 4.05 -3.09 -- 1.17 -- -4.49 -0.681 -- 25.8 1374 -- --
237.79 0.723 3.83 -1.5 0.331 -- -0.604 -- 0.00869 2.91 -- -- -- --
238.42 0.723 3.83 -1.49 0.354 -- -- -- 0.0113 4.04 -- -- -- --
223.92 0.697 3.9 -1.77 -- 0.724 -- -- -0.307 -- 23.4 1416 -- --
291.67 0.795 3.81 -- 0.331 0.334 -- -- 0.0592 4.92 22.85 709 -- --
245.26 0.732 3.83 -1.47 -- -- -- -- 0.0207 -- -- -- -- --
296.58 0.806 3.79 -- 0.325 -- -- -- 0.177 4.11 -- -- -- --
296.71 0.802 3.82 -- -- 0.421 -- -- 0.049 -- 25.44 1248 -- --
302.34 0.812 3.79 -- -- -- -- -- 0.184 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 201.77 temperature 20 720 > th dose dependent rect. 21 12
3 202.54 humidity 90 43200 > th dose dependent rect. 21 1
11 203.46 temperature 20 720 > th dose dependent rect. 15 18
26 204.60 temperature 25 1440 > th dose independent rect. 6 16
27 204.61 temperature 25 1440 > th dose independent rect. 6 14
29 204.63 humidity 90 43200 < th dose independent rect. 20 2
30 204.66 humidity 90 43200 > th dose independent rect. 20 2
34 204.77 humidity 90 43200 > th dose independent rect. 18 4
61 205.13 temperature 25 1440 < th dose independent rect. 6 16
62 205.13 temperature 20 720 > th dose dependent sin 11 NA
80 205.29 temperature 25 1440 < th dose independent rect. 16 4
84 205.34 humidity 90 43200 > th dose dependent rect. 9 17
97 205.45 humidity 90 43200 > th dose dependent sin 17 NA
98 205.45 humidity 90 43200 > th dose dependent rect. 12 13
103 205.48 temperature 25 1440 > th dose independent rect. 7 6
118 205.55 temperature 25 1440 > th dose independent rect. 16 4
132 205.66 temperature 25 1440 > th dose independent rect. 14 21
141 205.71 temperature 25 1440 < th dose independent rect. 6 7
181 205.89 temperature 25 1440 < th dose independent rect. 7 4
188 205.93 temperature 25 1440 > th dose independent rect. 8 3
217 206.03 temperature 25 1440 > th dose independent sin 1 NA
222 206.05 temperature 10 720 > th dose dependent rect. 15 18
248 206.14 temperature 25 1440 < th dose independent rect. 14 21
282 206.34 temperature 25 1440 > th dose independent no NA NA
290 206.36 temperature 25 1440 > th dose dependent rect. 16 1
291 206.36 radiation 1 1440 < th dose dependent rect. 17 12
338 206.51 humidity 90 43200 < th dose independent rect. 9 17
363 206.58 humidity 90 43200 > th dose independent rect. 9 17
373 206.62 humidity 90 43200 < th dose independent rect. 12 13
386 206.66 humidity 80 43200 < th dose independent rect. 13 1
393 206.67 humidity 90 43200 > th dose dependent rect. 15 23
394 206.68 humidity 90 43200 < th dose independent sin 17 NA
407 206.71 humidity 90 43200 > th dose dependent no NA NA
419 206.74 humidity 90 43200 > th dose independent rect. 11 14
428 206.76 temperature 25 1440 > th dose independent rect. 9 23
439 206.78 humidity 90 43200 > th dose independent sin 18 NA
461 206.83 temperature 25 4320 > th dose independent rect. 9 1
466 206.83 temperature 20 1440 > th dose dependent rect. 15 4
484 206.86 radiation 1 1440 < th dose dependent rect. 17 3
490 206.86 humidity 90 43200 > th dose dependent rect. 11 23
495 206.87 radiation 1 1440 < th dose dependent rect. 17 5
506 206.90 humidity 80 43200 < th dose independent rect. 12 3
523 206.92 radiation 1 1440 < th dose dependent rect. 17 10
526 206.93 wind 7 43200 < th dose independent rect. 15 1
548 206.97 wind 7 43200 > th dose independent rect. 15 1
560 206.99 temperature 10 720 > th dose dependent rect. 21 6
585 207.05 temperature 25 1440 < th dose independent sin 1 NA
590 207.06 humidity 80 43200 > th dose independent rect. 12 3
595 207.06 temperature 10 720 > th dose dependent rect. 21 12
619 207.11 wind 5 43200 > th dose dependent rect. 15 1
626 207.12 radiation 1 43200 < th dose dependent rect. 5 1
631 207.13 humidity 80 43200 > th dose independent rect. 13 1
637 207.15 temperature 25 1440 < th dose independent no NA NA
653 207.19 temperature 20 43200 > th dose dependent rect. 6 2
665 207.20 temperature 20 1440 > th dose dependent sin 15 NA
682 207.25 radiation 1 43200 < th dose independent rect. 17 1
713 207.30 radiation 1 43200 < th dose dependent rect. 18 12
720 207.32 temperature 20 1440 > th dose dependent rect. 12 10
728 207.34 humidity 90 43200 > th dose independent rect. 4 22
751 207.39 radiation 1 43200 > th dose independent rect. 17 1
770 207.41 radiation 1 43200 < th dose dependent rect. 2 4
806 207.45 radiation 1 43200 < th dose dependent rect. 21 9
815 207.47 wind 5 43200 > th dose dependent rect. 14 6
850 207.54 wind 7 43200 < th dose independent rect. 14 6
862 207.55 temperature 25 4320 > th dose dependent rect. 9 1
867 207.56 radiation 1 43200 < th dose dependent rect. 17 2
869 207.56 radiation 1 43200 < th dose dependent rect. 17 5
881 207.58 temperature 20 43200 > th dose dependent rect. 21 1
885 207.58 radiation 1 43200 < th dose dependent rect. 17 10
893 207.59 temperature 20 43200 > th dose dependent rect. 21 12
943 207.65 temperature 25 1440 > th dose dependent rect. 12 1
976 207.68 temperature 25 1440 < th dose independent rect. 9 23
999 207.70 humidity 90 43200 > th dose independent rect. 16 22