Os03g0810600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ras GTPase family protein.
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Os03g0810600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ras GTPase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.74 | 0.224 | 11.5 | 0.231 | 0.394 | -0.503 | 0.423 | -0.251 | 0.0639 | 19 | 30.8 | 93 | -- | -- |
| 22.8 | 0.222 | 11.5 | 0.205 | 0.396 | -0.484 | 0.434 | -- | 0.0596 | 18.9 | 31 | 100 | -- | -- |
| 23.15 | 0.224 | 11.5 | 0.224 | 0.399 | -0.522 | -- | -0.318 | 0.0604 | 18.9 | 30.87 | 114 | -- | -- |
| 23.25 | 0.225 | 11.5 | 0.19 | 0.398 | -0.497 | -- | -- | 0.0588 | 18.8 | 31.19 | 119 | -- | -- |
| 28.84 | 0.25 | 11.5 | 0.198 | -- | -0.826 | -- | -0.553 | 0.0404 | -- | 53.29 | 286 | -- | -- |
| 25.91 | 0.239 | 11.5 | 0.306 | 0.501 | -- | 0.435 | -- | 0.143 | 17.9 | -- | -- | -- | -- |
| 26.36 | 0.24 | 11.5 | 0.303 | 0.503 | -- | -- | -- | 0.145 | 17.8 | -- | -- | -- | -- |
| 29.1 | 0.251 | 11.5 | 0.117 | -- | -0.833 | -- | -- | 0.0209 | -- | 82.77 | 278 | -- | -- |
| 24.07 | 0.228 | 11.5 | -- | 0.369 | -0.579 | -- | -- | 0.0264 | 18.9 | 31.1 | 130 | -- | -- |
| 39.49 | 0.294 | 11.5 | 0.287 | -- | -- | -- | -- | 0.133 | -- | -- | -- | -- | -- |
| 28.77 | 0.251 | 11.5 | -- | 0.499 | -- | -- | -- | 0.111 | 17.8 | -- | -- | -- | -- |
| 29.44 | 0.253 | 11.5 | -- | -- | -0.872 | -- | -- | 0.00348 | -- | 50.74 | 279 | -- | -- |
| 41.67 | 0.301 | 11.5 | -- | -- | -- | -- | -- | 0.101 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.61 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 7 | 20 |
| 98 | 21.90 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 137 | 22.11 | temperature | 20.0 | 90 | > th | dose independent | rect. | 7 | 21 |
| 145 | 22.13 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 148 | 22.14 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 17 | 20 |
| 151 | 22.16 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 18 | 17 |
| 158 | 22.22 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 19 | 15 |
| 161 | 22.23 | temperature | 20.0 | 10 | > th | dose independent | rect. | 8 | 20 |
| 162 | 22.23 | temperature | 20.0 | 270 | > th | dose independent | rect. | 5 | 22 |
| 171 | 22.26 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 10 | 21 |
| 179 | 22.28 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 13 |
| 182 | 22.28 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 24 | 21 |
| 188 | 22.30 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 3 | 5 |
| 197 | 22.31 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 18 | 23 |
| 206 | 22.34 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 215 | 22.35 | temperature | 20.0 | 10 | > th | dose independent | rect. | 7 | 22 |
| 234 | 22.39 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 23 | 5 |
| 238 | 22.39 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 250 | 22.42 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 253 | 22.42 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 24 | 3 |
| 258 | 22.43 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 24 | 1 |
| 275 | 22.45 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 18 | 4 |
| 278 | 22.45 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 16 | 7 |
| 281 | 22.45 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 11 | 4 |
| 299 | 22.47 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 303 | 22.47 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 313 | 22.48 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 16 | 7 |
| 318 | 22.49 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 18 | 5 |
| 324 | 22.49 | temperature | 25.0 | 270 | > th | dose dependent | sin | 9 | NA |
| 334 | 22.50 | temperature | 25.0 | 270 | < th | dose independent | rect. | 24 | 22 |
| 375 | 22.54 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 392 | 22.55 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 407 | 22.56 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 13 | 19 |
| 415 | 22.57 | temperature | 10.0 | 90 | > th | dose dependent | sin | 5 | NA |
| 422 | 22.57 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 18 |
| 470 | 22.61 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 14 |
| 491 | 22.63 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 15 | 17 |
| 494 | 22.63 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 515 | 22.65 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 537 | 22.66 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 19 | 11 |
| 540 | 22.66 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 544 | 22.67 | temperature | 25.0 | 270 | < th | dose independent | rect. | 10 | 22 |
| 564 | 22.68 | temperature | 25.0 | 270 | > th | dose independent | rect. | 16 | 21 |
| 599 | 22.70 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 15 | 17 |
| 611 | 22.71 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 5 | 3 |
| 613 | 22.72 | temperature | 25.0 | 270 | < th | dose independent | sin | 9 | NA |
| 627 | 22.73 | temperature | 20.0 | 1440 | > th | dose independent | sin | 11 | NA |
| 674 | 22.76 | temperature | 30.0 | 90 | < th | dose dependent | sin | 7 | NA |
| 675 | 22.76 | temperature | 30.0 | 90 | < th | dose dependent | no | NA | NA |
| 678 | 22.76 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 17 | 9 |
| 738 | 22.79 | temperature | 25.0 | 270 | > th | dose independent | rect. | 17 | 18 |
| 747 | 22.79 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 749 | 22.80 | temperature | 20.0 | 1440 | < th | dose independent | sin | 10 | NA |
| 792 | 22.81 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 807 | 22.82 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 7 | 3 |
| 808 | 22.82 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 19 | 6 |
| 831 | 22.83 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 1 | 7 |
| 857 | 22.84 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 867 | 22.85 | temperature | 15.0 | 90 | > th | dose dependent | no | NA | NA |
| 868 | 22.85 | temperature | 30.0 | 90 | < th | dose dependent | sin | 4 | NA |
| 894 | 22.86 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 21 | 6 |
| 905 | 22.87 | temperature | 20.0 | 4320 | > th | dose independent | sin | 18 | NA |
| 979 | 22.89 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 980 | 22.90 | temperature | 20.0 | 4320 | < th | dose independent | sin | 18 | NA |