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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0843300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Ras small GTPase, Rab type family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.58 (0.0446) R2 : 0.00569
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.152 (0.0939) R2dN8 : 0.00735 R2N8 : 0.00569
σ : 0.84
deviance : 323.69
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
293.77 0.805 4.54 0.586 0.321 -0.376 0.451 0.954 0.377 21.7 1005 263 -- --
296.64 0.802 4.54 0.564 0.3 -0.357 0.351 -- 0.368 21.8 1006 218 -- --
294.53 0.799 4.54 0.57 0.318 -0.38 -- 0.926 0.378 21.7 1005 262 -- --
297.08 0.803 4.53 0.55 0.299 -0.372 -- -- 0.38 22.1 1006 218 -- --
299.37 0.806 4.53 0.558 -- -0.418 -- 0.757 0.415 -- 1006 227 -- --
307.35 0.822 4.57 0.574 0.358 -- 0.461 -- 0.216 21.2 -- -- -- --
308.11 0.822 4.57 0.557 0.356 -- -- -- 0.215 21.2 -- -- -- --
302.38 0.81 4.52 0.554 -- -0.4 -- -- 0.392 -- 1006 220 -- --
305.02 0.813 4.55 -- 0.309 -0.385 -- -- 0.336 22 1006 220 -- --
315.46 0.83 4.56 0.558 -- -- -- -- 0.214 -- -- -- -- --
316.29 0.832 4.59 -- 0.356 -- -- -- 0.153 21.3 -- -- -- --
310.46 0.821 4.54 -- -- -0.401 -- -- 0.329 -- 1006 214 -- --
323.69 0.84 4.58 -- -- -- -- -- 0.152 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 281.16 atmosphere 1005.0 270 < th dose independent rect. 24 9
21 284.66 atmosphere 1005.0 270 > th dose independent rect. 21 16
22 284.71 atmosphere 1005.0 270 < th dose independent sin 7 NA
30 285.21 atmosphere 1005.0 30 > th dose independent rect. 21 21
47 285.78 atmosphere 1005.0 720 < th dose independent rect. 24 3
50 285.89 atmosphere 1005.0 270 > th dose independent sin 6 NA
53 285.93 atmosphere 1005.0 10 < th dose independent rect. 1 9
55 285.95 atmosphere 1005.0 720 > th dose independent rect. 23 8
58 286.01 atmosphere 1005.0 30 > th dose independent rect. 23 19
61 286.13 atmosphere 1005.0 720 > th dose independent rect. 1 6
70 286.29 atmosphere 1005.0 720 > th dose independent rect. 21 11
96 286.62 atmosphere 1005.0 90 < th dose independent rect. 24 17
149 287.33 humidity 80.0 14400 < th dose independent rect. 8 1
155 287.36 temperature 25.0 90 > th dose dependent sin 11 NA
182 287.72 atmosphere 1005.0 270 < th dose independent rect. 5 1
188 287.75 wind 1.0 90 < th dose independent rect. 5 18
209 288.02 atmosphere 1005.0 270 > th dose independent rect. 1 12
229 288.29 humidity 80.0 14400 < th dose independent rect. 7 3
277 288.66 temperature 25.0 4320 > th dose independent rect. 6 1
288 288.73 atmosphere 1010.0 270 < th dose dependent rect. 24 9
289 288.74 temperature 25.0 4320 < th dose independent rect. 6 1
292 288.76 wind 1.0 90 < th dose independent sin 23 NA
293 288.76 wind 1.0 90 < th dose independent rect. 5 13
305 288.82 atmosphere 1005.0 720 > th dose independent rect. 4 1
354 289.18 humidity 80.0 14400 > th dose independent rect. 7 2
445 289.79 temperature 25.0 4320 > th dose dependent rect. 18 3
454 289.85 atmosphere 1005.0 30 > th dose independent rect. 4 14
510 290.21 precipitation 0.1 14400 < th dose independent rect. 19 8
511 290.21 precipitation 0.1 14400 < th dose dependent rect. 19 8
513 290.23 precipitation 0.1 14400 > th dose independent rect. 19 8
519 290.29 temperature 25.0 4320 > th dose dependent rect. 20 1
572 290.64 temperature 25.0 720 < th dose independent rect. 6 1
610 290.92 temperature 25.0 4320 > th dose independent rect. 20 1
618 290.97 temperature 25.0 4320 < th dose independent rect. 20 1
626 291.03 atmosphere 1000.0 14400 > th dose independent rect. 18 1
635 291.06 precipitation 0.1 14400 < th dose independent rect. 19 15
638 291.06 precipitation 0.1 14400 < th dose dependent rect. 19 15
642 291.07 wind 1.0 90 < th dose dependent rect. 5 18
645 291.09 precipitation 0.1 14400 > th dose independent rect. 22 3
648 291.09 precipitation 0.1 14400 > th dose dependent rect. 22 3
653 291.11 precipitation 0.1 14400 > th dose independent rect. 19 15
675 291.21 precipitation 0.1 14400 > th dose independent rect. 19 21
680 291.22 precipitation 0.1 14400 < th dose independent rect. 19 21
681 291.22 precipitation 0.1 14400 < th dose dependent rect. 19 21
687 291.24 precipitation 0.1 14400 < th dose independent rect. 19 19
688 291.24 temperature 25.0 4320 > th dose dependent rect. 18 13
689 291.24 precipitation 0.1 14400 < th dose dependent rect. 19 19
691 291.25 temperature 25.0 4320 > th dose dependent rect. 18 10
695 291.26 precipitation 0.1 14400 > th dose independent rect. 19 19
698 291.27 atmosphere 1000.0 14400 < th dose independent rect. 18 1
717 291.32 precipitation 0.1 14400 > th dose independent rect. 23 21
724 291.34 precipitation 0.1 14400 < th dose independent rect. 23 21
727 291.34 precipitation 0.1 14400 < th dose dependent rect. 23 21
756 291.44 precipitation 0.1 14400 < th dose independent rect. 17 17
757 291.44 precipitation 0.1 14400 > th dose independent rect. 13 21
758 291.44 precipitation 0.1 14400 < th dose dependent rect. 17 17
759 291.44 precipitation 0.1 14400 > th dose dependent rect. 23 21
763 291.45 precipitation 0.1 14400 < th dose independent rect. 13 21
765 291.45 precipitation 0.1 14400 < th dose independent rect. 19 23
766 291.45 wind 1.0 270 < th dose dependent rect. 5 1
770 291.45 precipitation 0.1 14400 < th dose dependent rect. 13 21
771 291.45 precipitation 0.1 14400 < th dose dependent rect. 19 23
774 291.46 precipitation 0.1 14400 > th dose independent rect. 17 17
775 291.46 precipitation 0.1 14400 > th dose independent rect. 19 23
785 291.49 precipitation 0.1 14400 > th dose independent rect. 6 22
786 291.49 precipitation 0.1 14400 < th dose independent rect. 6 22
788 291.49 precipitation 0.1 14400 < th dose dependent rect. 6 22
811 291.54 precipitation 0.1 14400 > th dose independent sin 11 NA
812 291.54 precipitation 0.1 14400 < th dose independent sin 11 NA
819 291.54 precipitation 0.1 14400 > th dose independent rect. 17 23
820 291.54 precipitation 0.1 14400 < th dose dependent sin 11 NA
823 291.55 precipitation 0.1 14400 < th dose independent rect. 17 23
824 291.55 precipitation 0.1 14400 < th dose dependent rect. 17 23
832 291.57 precipitation 0.1 14400 < th dose independent rect. 22 2
834 291.57 precipitation 0.1 14400 < th dose dependent rect. 22 2
842 291.59 precipitation 0.1 14400 > th dose independent rect. 17 21
843 291.59 precipitation 0.1 14400 < th dose independent rect. 17 21
845 291.59 precipitation 0.1 14400 < th dose dependent rect. 17 21
857 291.61 precipitation 0.1 14400 < th dose independent rect. 15 19
859 291.61 precipitation 0.1 14400 < th dose dependent rect. 15 19
950 291.74 precipitation 0.1 14400 > th dose dependent rect. 19 21