BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0843300 Os01g0843300|Os01g0843300
(597 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0843300 Ras small GTPase, Rab type family protein 1016 0.0
Os03g0810600 Ras GTPase family protein 810 0.0
Os03g0810700 173 3e-43
>Os01g0843300 Ras small GTPase, Rab type family protein
Length = 597
Score = 1016 bits (2626), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 504/586 (86%), Positives = 504/586 (86%)
Query: 12 GKQSLRVVVIGDPGTGKSSLVVSAATEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQR 71
GKQSLRVVVIGDPGTGKSSLVVSAATE EQR
Sbjct: 12 GKQSLRVVVIGDPGTGKSSLVVSAATEATSPAYCPPPASPSTTSPTASPSPSSTPPPEQR 71
Query: 72 SKLIAECQSADVVVLTYACDQPATLERLSSFWFPELRRLQLEAPVIVVGCKLDLRGEEQG 131
SKLIAECQSADVVVLTYACDQPATLERLSSFWFPELRRLQLEAPVIVVGCKLDLRGEEQG
Sbjct: 72 SKLIAECQSADVVVLTYACDQPATLERLSSFWFPELRRLQLEAPVIVVGCKLDLRGEEQG 131
Query: 132 TLDAVMAPIMVAFREIETCIECSALRQILVYEVFYYAQKAVLYPTAPLFDQEAQMLKLRC 191
TLDAVMAPIMVAFREIETCIECSALRQILVYEVFYYAQKAVLYPTAPLFDQEAQMLKLRC
Sbjct: 132 TLDAVMAPIMVAFREIETCIECSALRQILVYEVFYYAQKAVLYPTAPLFDQEAQMLKLRC 191
Query: 192 MRALKRIFILCDHDRDGAFSDVELNDFQVICFNAPLQPNEIIGVKRTIQEKLTEGVNENX 251
MRALKRIFILCDHDRDGAFSDVELNDFQVICFNAPLQPNEIIGVKRTIQEKLTEGVNEN
Sbjct: 192 MRALKRIFILCDHDRDGAFSDVELNDFQVICFNAPLQPNEIIGVKRTIQEKLTEGVNENG 251
Query: 252 XXXXXXXXXXXXIIGNGKLETTWTVLRKFGYDNELKLRDDLIPAIKRAPDQDGALQPAEI 311
IIGNGKLETTWTVLRKFGYDNELKLRDDLIPAIKRAPDQDGALQPAEI
Sbjct: 252 LTLTGFLFLHTLIIGNGKLETTWTVLRKFGYDNELKLRDDLIPAIKRAPDQDGALQPAEI 311
Query: 312 NDLFSTAPENPWSSHLYENCAENNVLGGLSFEGFISKWTLMTLIHPSNSFANLIYVGYPG 371
NDLFSTAPENPWSSHLYENCAENNVLGGLSFEGFISKWTLMTLIHPSNSFANLIYVGYPG
Sbjct: 312 NDLFSTAPENPWSSHLYENCAENNVLGGLSFEGFISKWTLMTLIHPSNSFANLIYVGYPG 371
Query: 372 DFDSAFXXXXXXXXXXXXXXXXXNVFQCYVFGPRHAGKTALLQSFLKRYHSIGTRKTLVM 431
DFDSAF NVFQCYVFGPRHAGKTALLQSFLKRYHSIGTRKTLVM
Sbjct: 372 DFDSAFTTTRKRRVDRKKKQTQRNVFQCYVFGPRHAGKTALLQSFLKRYHSIGTRKTLVM 431
Query: 432 REISEGDVGPLLSDKESLAPCDVAVIVYDSGDEVSWQRARELLVQVATRGKNTGYEVPCL 491
REISEGDVGPLLSDKESLAPCDVAVIVYDSGDEVSWQRARELLVQVATRGKNTGYEVPCL
Sbjct: 432 REISEGDVGPLLSDKESLAPCDVAVIVYDSGDEVSWQRARELLVQVATRGKNTGYEVPCL 491
Query: 492 IVAAKDDLDQSPLALQDSTRVSHDMGIETPIPISVRLRDLNNIFCRIVHAAQQPHLSIPE 551
IVAAKDDLDQSPLALQDSTRVSHDMGIETPIPISVRLRDLNNIFCRIVHAAQQPHLSIPE
Sbjct: 492 IVAAKDDLDQSPLALQDSTRVSHDMGIETPIPISVRLRDLNNIFCRIVHAAQQPHLSIPE 551
Query: 552 TEAGKTHRQYRQLLNRSLTXXXXXXXXXXXXXXXXXXXXXXKNASS 597
TEAGKTHRQYRQLLNRSLT KNASS
Sbjct: 552 TEAGKTHRQYRQLLNRSLTVVSVGAAVAVVGVAAYRVYAARKNASS 597
>Os03g0810600 Ras GTPase family protein
Length = 642
Score = 810 bits (2092), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/603 (68%), Positives = 447/603 (74%), Gaps = 45/603 (7%)
Query: 12 GKQSLRVVVIGDPGTGKSSLVVSAATEXXXXXXXXXXXXXXXXX-----XXXXXXXXXXX 66
GKQ +RVVVIGDPGTGKSSLVVS ATE
Sbjct: 12 GKQGVRVVVIGDPGTGKSSLVVSVATEAFPENVPRVMPPTRLPADYFPDRVPITIVDTSS 71
Query: 67 XXEQRSKLIAECQSADVVVLTYACDQPATLERLSSFWFPELRRLQLEAPVIVVGCKLDLR 126
E R+KLIAECQ+AD VVLTYACD+PATLERLS+FW PELRRLQL+APVIVVGCKLDLR
Sbjct: 72 SPEHRAKLIAECQAADAVVLTYACDRPATLERLSTFWLPELRRLQLKAPVIVVGCKLDLR 131
Query: 127 GEEQGTLDAVMAPIMVAFREIETCIECSALRQILVYEVFYYAQKAVLYPTAPLFDQEAQM 186
E+Q +L+ VMAPIM FREIETCIECSALRQI V EVFYYAQKAVL+PTAPLFDQEAQ
Sbjct: 132 DEQQVSLEQVMAPIMQTFREIETCIECSALRQIQVPEVFYYAQKAVLHPTAPLFDQEAQS 191
Query: 187 LKLRCMRALKRIFILCDHDRDGAFSDVELNDFQVICFNAPLQPNEIIGVKRTIQEKLTEG 246
LK RC+RALKRIFILCDHDRDGA SDVELNDFQV CFNAPLQP EI GVKR +QEK+ EG
Sbjct: 192 LKPRCVRALKRIFILCDHDRDGALSDVELNDFQVKCFNAPLQPTEIAGVKRVVQEKMPEG 251
Query: 247 VNENXXXXXXXXXXXXXIIGNGKLETTWTVLRKFGYDNELKLRDDLIPAIKRAPDQ---- 302
VN+N I G+LETTWTVLRKFGYDNE+KLRDDLIP IKRAPDQ
Sbjct: 252 VNDNGLTLTGFLFLHALFIEKGRLETTWTVLRKFGYDNEIKLRDDLIPTIKRAPDQTLEL 311
Query: 303 -------------------DGALQPAEINDLFSTAPENPWSSHLYENCAENNVLGGLSFE 343
D AL PAE++DLFSTAPENPWS++ Y +CAE NVLGGLS E
Sbjct: 312 TGQAIDFLRGIFNMFDTDNDDALLPAELDDLFSTAPENPWSNNPYVDCAERNVLGGLSLE 371
Query: 344 GFISKWTLMTLIHPSNSFANLIYVGYPGDFDSAFXXXXXXXXXXXXXXXXXNVFQCYVFG 403
GF+SKW LMTL+ P+NSFANLIYVGY GDF SAF NVFQCYVFG
Sbjct: 372 GFLSKWALMTLLDPANSFANLIYVGYSGDFGSAFTTMRKRRVDRKKQQTQRNVFQCYVFG 431
Query: 404 PRHAGKTALLQSFLKRYHS-----------------IGTRKTLVMREISEGDVGPLLSDK 446
PR AGKTALLQSFL R S G+RKTLV REI E DV PLL+D+
Sbjct: 432 PRGAGKTALLQSFLGRQPSDALPMNGERFAANTVELSGSRKTLVFREIPEDDVRPLLADR 491
Query: 447 ESLAPCDVAVIVYDSGDEVSWQRARELLVQVATRGKNTGYEVPCLIVAAKDDLDQSPLAL 506
ESLAPCDVAV VYDS DE SWQR R+LLV+VAT G+NTGYEVPCLIVAAKDDLDQSPLAL
Sbjct: 492 ESLAPCDVAVFVYDSCDEFSWQRTRDLLVEVATHGENTGYEVPCLIVAAKDDLDQSPLAL 551
Query: 507 QDSTRVSHDMGIETPIPISVRLRDLNNIFCRIVHAAQQPHLSIPETEAGKTHRQYRQLLN 566
Q+STRVS DMGIE PIPISVRLRDLNNIFCRIVHAAQQPHLSIPETEAGKT RQYRQLLN
Sbjct: 552 QESTRVSQDMGIEMPIPISVRLRDLNNIFCRIVHAAQQPHLSIPETEAGKTRRQYRQLLN 611
Query: 567 RSL 569
RSL
Sbjct: 612 RSL 614
>Os03g0810700
Length = 253
Score = 173 bits (439), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 104/242 (42%), Positives = 138/242 (57%), Gaps = 21/242 (8%)
Query: 12 GKQSLRVVVIGDPGTGKSSLVVSAATEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQR 71
K +RV VIGD GTGKSSLV + AT
Sbjct: 11 AKLDVRVAVIGDHGTGKSSLVATIATGRFPDQDDGVARVLPP------------------ 52
Query: 72 SKLIAECQSADV-VVLTYACDQPATLERLSSFWFPELRRL-QLEAPVIVVGCKLDLRG-E 128
++L + A V V + +P TLER+++FW P++RRL Q + PVI+ GCK+DL +
Sbjct: 53 ARLPVDYFPARVPVTIVDTSSRPNTLERITTFWLPKIRRLLQSKVPVILAGCKVDLSDKQ 112
Query: 129 EQGTLDAVMAPIMVAFREIETCIECSALRQILVYEVFYYAQKAVLYPTAPLFDQEAQMLK 188
+Q L+ V+ IM FRE+E +ECSAL +I V EVFY AQ AVL PT PLFD+ + +K
Sbjct: 113 QQAGLENVLDFIMCTFREVEIYLECSALHRIKVDEVFYCAQMAVLRPTTPLFDKATRSIK 172
Query: 189 LRCMRALKRIFILCDHDRDGAFSDVELNDFQVICFNAPLQPNEIIGVKRTIQEKLTEGVN 248
RCM A ++IF L D D+DGA SD E+N F V CF LQP EI +KR +Q+ + VN
Sbjct: 173 PRCMMAFQQIFSLYDRDKDGAVSDAEMNAFLVRCFKVSLQPAEIADMKRVVQQHMIGCVN 232
Query: 249 EN 250
+N
Sbjct: 233 DN 234
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.136 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,715,854
Number of extensions: 650080
Number of successful extensions: 1453
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1446
Number of HSP's successfully gapped: 3
Length of query: 597
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 490
Effective length of database: 11,448,903
Effective search space: 5609962470
Effective search space used: 5609962470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)