BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0785800 Os03g0785800|AB071806
(312 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0785800 Similar to Transcription factor PCF6 (Fragment) 454 e-128
Os07g0152000 TCP transcription factor family protein 134 7e-32
Os05g0513100 Similar to PlCYC4 protein (Fragment) 107 8e-24
Os01g0763200 Similar to Transcription factor PCF7 (Fragment) 106 2e-23
Os01g0213800 Transcription factor PCF5 102 5e-22
Os01g0755500 Similar to Transcription factor PCF7 (Fragment) 99 5e-21
Os12g0112200 91 1e-18
Os09g0410500 Similar to SfCYC2 protein (Fragment) 81 1e-15
Os07g0137700 75 5e-14
Os08g0432300 75 6e-14
Os03g0706500 TCP transcription factor family protein 75 7e-14
>Os03g0785800 Similar to Transcription factor PCF6 (Fragment)
Length = 312
Score = 454 bits (1168), Expect = e-128, Method: Compositional matrix adjust.
Identities = 237/312 (75%), Positives = 237/312 (75%)
Query: 1 RVRATGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLINAASP 60
RVRATGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLINAASP
Sbjct: 1 RVRATGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLINAASP 60
Query: 61 AIDTLPSLDXXXXXXXXXXXXXXXXTRRRSXXXXXXLSNKSGCSSTSETSKGSDKEVTVA 120
AIDTLPSLD TRRRS LSNKSGCSSTSETSKGSDKEVTVA
Sbjct: 61 AIDTLPSLDPAAFAAIPHAAADAAPTRRRSQQQQQQLSNKSGCSSTSETSKGSDKEVTVA 120
Query: 121 SAPAQAASFTELLXXXXXXXXXXXXXXXXXXDCVGIAHPGKGGAEGASTYGFSAASSFGD 180
SAPAQAASFTELL DCVGIAHPGKGGAEGASTYGFSAASSFGD
Sbjct: 121 SAPAQAASFTELLIAGVAASSAGGGAIGNGADCVGIAHPGKGGAEGASTYGFSAASSFGD 180
Query: 181 APPIGMVPAPPFNFSAPGADMAAHYSXXXXXXXXXXXXXXXXYNLNFSMSSGFLGANRGT 240
APPIGMVPAPPFNFSAPGADMAAHYS YNLNFSMSSGFLGANRGT
Sbjct: 181 APPIGMVPAPPFNFSAPGADMAAHYSLAQDQLAAPPPPAGGDYNLNFSMSSGFLGANRGT 240
Query: 241 LQSNSPSNMSGXXXXXXXXXLQRLDGSTISFLLGXXXXXXXXXXSEGQITSTAALQLWDG 300
LQSNSPSNMSG LQRLDGSTISFLLG SEGQITSTAALQLWDG
Sbjct: 241 LQSNSPSNMSGHHHHHHQQQLQRLDGSTISFLLGHAAAAAHPAASEGQITSTAALQLWDG 300
Query: 301 FRHSGMKEKSKN 312
FRHSGMKEKSKN
Sbjct: 301 FRHSGMKEKSKN 312
>Os07g0152000 TCP transcription factor family protein
Length = 445
Score = 134 bits (338), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 74/115 (64%), Positives = 79/115 (68%), Gaps = 4/115 (3%)
Query: 3 RATGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLINAASPAI 62
RA+GGKDRHSKVYTAKGIRDRRVRLSV+TAIQFYDLQDRLG+DQPSKAIEWLI AA+ AI
Sbjct: 57 RASGGKDRHSKVYTAKGIRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAIEWLIKAAAAAI 116
Query: 63 DTLPSLDXXX----XXXXXXXXXXXXXTRRRSXXXXXXLSNKSGCSSTSETSKGS 113
D LPSLD + KSGCSSTSETSKGS
Sbjct: 117 DKLPSLDTASFPTNPASSAAVAAAAAPPLPHAEREQQQQLTKSGCSSTSETSKGS 171
>Os05g0513100 Similar to PlCYC4 protein (Fragment)
Length = 294
Score = 107 bits (268), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 49/66 (74%), Positives = 52/66 (78%)
Query: 3 RATGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLINAASPAI 62
R GGKDRHSKV T KG+RDRRVRLSV TAIQ YDLQDRLG QPSK ++WLINAA I
Sbjct: 51 RVFGGKDRHSKVRTVKGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLINAAQAEI 110
Query: 63 DTLPSL 68
D LP L
Sbjct: 111 DKLPPL 116
>Os01g0763200 Similar to Transcription factor PCF7 (Fragment)
Length = 307
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/66 (72%), Positives = 53/66 (80%)
Query: 3 RATGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLINAASPAI 62
R GGKDRHSKV T KG+RDRRVRLSV TAIQ YDLQDRLG +QPSK ++WL+NAA I
Sbjct: 52 RVFGGKDRHSKVKTVKGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAARHEI 111
Query: 63 DTLPSL 68
D LP L
Sbjct: 112 DKLPPL 117
>Os01g0213800 Transcription factor PCF5
Length = 458
Score = 102 bits (253), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 48/67 (71%), Positives = 55/67 (82%)
Query: 2 VRATGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLINAASPA 61
VR+TG KDRHSKV TA+G RDRRVRLS TAIQFYD+QDRLG+D+PSKA++WLI A A
Sbjct: 84 VRSTGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKDA 143
Query: 62 IDTLPSL 68
ID L L
Sbjct: 144 IDKLDVL 150
>Os01g0755500 Similar to Transcription factor PCF7 (Fragment)
Length = 443
Score = 98.6 bits (244), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 53/63 (84%)
Query: 4 ATGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLINAASPAID 63
A G KDRHSKV TA+G+RDRRVRL+ TAI+FYD+QDRLG+D+PSKA++WL+ A AID
Sbjct: 123 AAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLMRNAKAAID 182
Query: 64 TLP 66
LP
Sbjct: 183 ELP 185
>Os12g0112200
Length = 141
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 51/64 (79%)
Query: 6 GGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLINAASPAIDTL 65
G KD+HSKV T++G+RDR VRLSV AI FYD+QDRLG DQPSKAIEW I AA+ AID
Sbjct: 16 GEKDKHSKVVTSRGLRDRCVRLSVPMAIAFYDIQDRLGVDQPSKAIEWHIRAAAAAIDAF 75
Query: 66 PSLD 69
SLD
Sbjct: 76 LSLD 79
>Os09g0410500 Similar to SfCYC2 protein (Fragment)
Length = 258
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 45/57 (78%)
Query: 9 DRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLINAASPAIDTL 65
DRHSK+ TA+G+RDRR+RLS+ A F+ LQDRLGFD+ SK ++WL+ + PAID L
Sbjct: 79 DRHSKIRTAQGVRDRRMRLSLDVARDFFALQDRLGFDKASKTVDWLLTQSKPAIDRL 135
>Os07g0137700
Length = 209
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/47 (78%), Positives = 40/47 (85%)
Query: 23 RRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLINAASPAIDTLPSLD 69
R +RLSV TAI FYD+QDRLG DQPSKAIEWLI AA+ AID LPSLD
Sbjct: 10 RSMRLSVPTAIAFYDIQDRLGVDQPSKAIEWLIRAAAAAIDALPSLD 56
>Os08g0432300
Length = 263
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 44/57 (77%)
Query: 9 DRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLINAASPAIDTL 65
DRHSK+ TA+G+RDRR+RLSV A F+ LQD+LGFD+ S+ +EWL+ + AI+ L
Sbjct: 87 DRHSKIRTAQGVRDRRMRLSVGVARDFFALQDKLGFDKASRTVEWLLTQSKHAINRL 143
>Os03g0706500 TCP transcription factor family protein
Length = 388
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 46/62 (74%)
Query: 8 KDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLINAASPAIDTLPS 67
KDRHSK+ TA G+RDRR+RLS+ A +F+ LQD LGFD+ SK ++WL+N + AI + S
Sbjct: 116 KDRHSKISTAGGMRDRRMRLSLDVARKFFALQDMLGFDKASKTVQWLLNMSKAAIREIMS 175
Query: 68 LD 69
D
Sbjct: 176 DD 177
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.128 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,123,634
Number of extensions: 254875
Number of successful extensions: 682
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 677
Number of HSP's successfully gapped: 12
Length of query: 312
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 211
Effective length of database: 11,762,187
Effective search space: 2481821457
Effective search space used: 2481821457
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 156 (64.7 bits)