BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0437200 Os03g0437200|AK059839
(220 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0437200 Zinc finger, C2H2-type domain containing protein 359 e-99
Os03g0437100 Zinc finger, C2H2-type domain containing protein 166 8e-42
Os12g0583700 Zinc finger, C2H2-type domain containing protein 108 4e-24
Os03g0764100 Zinc finger transcription factor ZF1 105 2e-23
Os07g0588600 Zinc finger, C2H2-type domain containing protein 87 1e-17
Os07g0590100 Zinc finger, C2H2-type domain containing protein 85 4e-17
Os03g0610400 Zinc finger, C2H2-type domain containing protein 80 9e-16
Os01g0903766 79 3e-15
Os03g0592900 77 9e-15
Os07g0588700 Zinc finger, C2H2-type domain containing protein 65 3e-11
Os11g0702400 Zinc finger, C2H2-type domain containing protein 64 7e-11
>Os03g0437200 Zinc finger, C2H2-type domain containing protein
Length = 220
Score = 359 bits (921), Expect = e-99, Method: Compositional matrix adjust.
Identities = 182/220 (82%), Positives = 182/220 (82%)
Query: 1 MTAALQALLDPTALSLGLPTPAINKEEYLAICLAALACTRAGKALXXXXXXXXXXACNKW 60
MTAALQALLDPTALSLGLPTPAINKEEYLAICLAALACTRAGKAL ACNKW
Sbjct: 1 MTAALQALLDPTALSLGLPTPAINKEEYLAICLAALACTRAGKALVGVGGQQQVQACNKW 60
Query: 61 LCPAPAAPEELRFRCTVCGKAFASYQALGGHKSSHRKPPSPGDHYGXXXXXXXXXXXGDS 120
LCPAPAAPEELRFRCTVCGKAFASYQALGGHKSSHRKPPSPGDHYG GDS
Sbjct: 61 LCPAPAAPEELRFRCTVCGKAFASYQALGGHKSSHRKPPSPGDHYGAAAAAQQLASAGDS 120
Query: 121 KEDSASSAAGSTGPHRCTICRRSFATGQALGGHKRCHYWDGTXXXXXXXXXXXXXXXXXR 180
KEDSASSAAGSTGPHRCTICRRSFATGQALGGHKRCHYWDGT R
Sbjct: 121 KEDSASSAAGSTGPHRCTICRRSFATGQALGGHKRCHYWDGTSVSVSVSASASAASSAVR 180
Query: 181 NFDLNLMPLPESTAAAGIKRWAEEEEVQSPLPVKKLRMSN 220
NFDLNLMPLPESTAAAGIKRWAEEEEVQSPLPVKKLRMSN
Sbjct: 181 NFDLNLMPLPESTAAAGIKRWAEEEEVQSPLPVKKLRMSN 220
>Os03g0437100 Zinc finger, C2H2-type domain containing protein
Length = 200
Score = 166 bits (421), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 98/204 (48%), Positives = 121/204 (59%), Gaps = 21/204 (10%)
Query: 23 INKEEYLAICLAALACTRAGKALXXXXXXXXXXACNKWLCPAPAAPEE--LRFRCTVCGK 80
+ ++Y+++CL ALA G A + + AP APE LRFRC+VCGK
Sbjct: 5 MTHDDYVSLCLMALAQAGVGGQWP---------AQKQQIDMAPPAPERELLRFRCSVCGK 55
Query: 81 AFASYQALGGHKSSHRKPPSPGDHYGXXXXXXXXXXXGDSKEDSASSAAGSTGP----HR 136
AF S+QALGGHK+SHRKPP+ S ED+ASS+ +T HR
Sbjct: 56 AFPSHQALGGHKASHRKPPT-----AALPMHVIDAPPPPSAEDTASSSTTTTTSGGGRHR 110
Query: 137 CTICRRSFATGQALGGHKRCHYWDGTXXXXXXXXXXXXXXXXXRNFDLNLMPLPESTAAA 196
C++C R+FATGQALGGHKRCHYWDG RNFDLNL P+PE T AA
Sbjct: 111 CSVCHRTFATGQALGGHKRCHYWDGLSVVSVTASASGSGSSSVRNFDLNLKPVPE-TVAA 169
Query: 197 GIKRWAEEEEVQSPLPVKKLRMSN 220
G++RW EEEEVQSPLP KK R+S+
Sbjct: 170 GVRRWGEEEEVQSPLPFKKRRLSS 193
>Os12g0583700 Zinc finger, C2H2-type domain containing protein
Length = 247
Score = 108 bits (269), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 84/203 (41%), Positives = 99/203 (48%), Gaps = 23/203 (11%)
Query: 24 NKEEYLAICLAALACTRAGKALXXXXXXXXXXACNKWLCPAPAAPEELRFRCTVCGKAFA 83
++EEYLA+CL LA R + A AA + RC+VCGKAFA
Sbjct: 56 SEEEYLALCLLMLARGRRDG--------------DDVAASASAAAAAVEHRCSVCGKAFA 101
Query: 84 SYQALGGHKSSHRKPPSPG--DHYGXXXXXXXXXXXGDSKEDSASSAAGSTGPHRCTICR 141
SYQALGGHK+SHRKPP P D S S S G H C +C
Sbjct: 102 SYQALGGHKASHRKPPPPAMVDDDEVVVETKPAAIATPSSSASGVSGGGGGRAHECNVCG 161
Query: 142 RSFATGQALGGHKRCHYWDGTXXXXXXXXXXX------XXXXXXRNFDLNLMPLPESTAA 195
++F TGQALGGHKRCHY DGT R FDLNL LP+ AA
Sbjct: 162 KAFPTGQALGGHKRCHY-DGTIGSAAGAGASKPAAKTTVAVAASRGFDLNLPALPDVAAA 220
Query: 196 AGIKRWAEEEEVQSPLPVKKLRM 218
A + AE++EV SPL KK R+
Sbjct: 221 ADQRCAAEDDEVLSPLAFKKPRL 243
>Os03g0764100 Zinc finger transcription factor ZF1
Length = 269
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 83/171 (48%), Gaps = 24/171 (14%)
Query: 72 RFRCTVCGKAFASYQALGGHKSSHRK--PPSPGDHYGXXXXXXXXXXXGDSKEDSASSAA 129
F+C+VCGK+F+SYQALGGHK+SHR P P + +E + SS A
Sbjct: 96 EFKCSVCGKSFSSYQALGGHKTSHRVKLPTPPAAPVLAPAPVAALLPSAEDREPATSSTA 155
Query: 130 GSTG-----PHRCTICRRSFATGQALGGHKRCHY--------------WDGTXXXXXXXX 170
S+ HRC+IC++ F TGQALGGHKR HY T
Sbjct: 156 ASSDGMTNRVHRCSICQKEFPTGQALGGHKRKHYDGGVGAGAGASSTELLATVAAESEVG 215
Query: 171 XXXXXXXXXRNFDLNLMPLPEST---AAAGIKRWAEEEEVQSPLPVKKLRM 218
R FDLNL +PE + G K W EEEEVQSPL KK R+
Sbjct: 216 SSGNGQSATRAFDLNLPAVPEFVWRPCSKGKKMWDEEEEVQSPLAFKKPRL 266
>Os07g0588600 Zinc finger, C2H2-type domain containing protein
Length = 220
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 73/151 (48%), Gaps = 26/151 (17%)
Query: 73 FRCTVCGKAFASYQALGGHKSSHRKPPSPGDHYGXXXXXXXXXXXGDSKEDSASSAAGST 132
+ C+VCGK + SYQALGGHK+SHRKPPSP +E S+ AG
Sbjct: 87 YECSVCGKVYGSYQALGGHKTSHRKPPSP------------AAEPAAGEEPSSGGVAGEA 134
Query: 133 GPHRCTICRRSFATGQALGGHKRCHY-----WDGTXXXXXXXXXXXXXXXXXRNFDLNLM 187
HRC+IC R+F +GQALGGHKR HY D ++FDLN
Sbjct: 135 KVHRCSICLRTFPSGQALGGHKRLHYEGGAVGDAVKEKNSLKTKAAVATAVLKDFDLN-- 192
Query: 188 PLPESTAAAGIKRWAEEEEVQSPLPVKKLRM 218
LP + AG +E SP K+ R+
Sbjct: 193 -LPAAATTAG------DEAESSPPEAKRARL 216
>Os07g0590100 Zinc finger, C2H2-type domain containing protein
Length = 199
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 79/155 (50%), Gaps = 14/155 (9%)
Query: 73 FRCTVCGKAFASYQALGGHKSSHRKPPSPGDHYGXXXXXXXXXXXGDSKE-----DSASS 127
FRC++CGKAFASYQALGGHK+SHRKP + S D+AS
Sbjct: 45 FRCSLCGKAFASYQALGGHKASHRKPSAAAAAPPAHRDVVVAAAPASSGRVAADADAASE 104
Query: 128 AAGSTGPHRCTICRRSFATGQALGGHKRCHYWDGTXXXXXXXXXXXXXXXXXRNFDLNLM 187
A G H C++CRR FATGQALGGHKR HY G FDLN+
Sbjct: 105 ADGRRRRHVCSLCRRGFATGQALGGHKRFHYLHGPSVSATVSSAATAASVGA-AFDLNVA 163
Query: 188 PLPESTAAAGIKR-----WAEEEEVQSPLPVKKLR 217
P+ E AG +R +++E +SP P KK R
Sbjct: 164 PIKE---IAGEQRRCGEEADDDDEAESPSPAKKPR 195
>Os03g0610400 Zinc finger, C2H2-type domain containing protein
Length = 238
Score = 80.5 bits (197), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 97/200 (48%), Gaps = 37/200 (18%)
Query: 19 PTPAINKEEYLAICLAALACTRAGKALXXXXXXXXXXACNKWLCPAPAAPEELRFRCTVC 78
P P ++EE+LA+ L LA R + P+PA P+E + C+VC
Sbjct: 57 PPPHGSEEEHLALSLLMLA--RGHRD------------------PSPA-PQE-QHGCSVC 94
Query: 79 GKAFASYQALGGHKSSHRKPPSPGDHYGXXXXXXXXXXXGDSKEDSASSAAGSTGP---- 134
G+ F+SYQALGGHK+SHR P +P S++S +GS G
Sbjct: 95 GRVFSSYQALGGHKTSHR-PRTPPTMAAVVVVDEPAATTASPAASSSNSGSGSGGGGGNK 153
Query: 135 -HRCTICRRSFATGQALGGHKRCHYWDGTXXXXXXXXXXXXXXXXXRNFDLNL--MPLPE 191
H C++C+++F TGQALGGHKRCHY R FDLNL + LP+
Sbjct: 154 VHECSVCKKTFPTGQALGGHKRCHY-------EGPIGSGGGAAVAGRGFDLNLPAVALPD 206
Query: 192 STAAAGIKRWAEEEEVQSPL 211
+ AEEEEV SPL
Sbjct: 207 IMTERCLPAAAEEEEVLSPL 226
>Os01g0903766
Length = 304
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/45 (95%), Positives = 43/45 (95%), Gaps = 1/45 (2%)
Query: 1 MTAALQALLDPTALSLGLPTPAINKEEYLAICLAALACTRAGKAL 45
MTAALQALLDPTALSLGLPTPAINKEEYLAICLAALA TRA KAL
Sbjct: 95 MTAALQALLDPTALSLGLPTPAINKEEYLAICLAALAGTRA-KAL 138
>Os03g0592900
Length = 212
Score = 77.0 bits (188), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 40/45 (88%), Positives = 40/45 (88%)
Query: 1 MTAALQALLDPTALSLGLPTPAINKEEYLAICLAALACTRAGKAL 45
MTAALQALLDPTALSLGLPTP INKE YLAICL LA TRAGKAL
Sbjct: 1 MTAALQALLDPTALSLGLPTPVINKEVYLAICLTVLAGTRAGKAL 45
>Os07g0588700 Zinc finger, C2H2-type domain containing protein
Length = 226
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 52/125 (41%), Gaps = 22/125 (17%)
Query: 68 PEELRFRCTVCGKAFASYQALGGHKSSHRKPPSPGDHYGXXXXXXXXXXXGDSKEDSASS 127
P + + C+VCGK + YQALGGH + HR GD + +S
Sbjct: 92 PSQRAYECSVCGKVYWCYQALGGHMTCHRN-------------LFAQVVAGD---ELSSD 135
Query: 128 AAGSTGPHRCTICRRSFATGQALGGHKRCHYWDGTXXXXXXXXXXXXXXX------XXRN 181
H+C+ICR F +GQALGGH R HY G ++
Sbjct: 136 RTMVVKGHKCSICRLEFPSGQALGGHMRVHYVGGVEGGSVKEKNVVKTKVTGALKLVLKD 195
Query: 182 FDLNL 186
FDLN+
Sbjct: 196 FDLNV 200
>Os11g0702400 Zinc finger, C2H2-type domain containing protein
Length = 170
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 8/85 (9%)
Query: 73 FRCTVCGKAFASYQALGGHKSSHRKPPSPGDHYGXXXXXXXXXXXGDSKEDSASSAAGST 132
F+C CG+ F+++QALGGH++SH++P D G + A +
Sbjct: 45 FQCRTCGRRFSTFQALGGHRTSHKRPRVRAD--------GLDLLLGARPGKLGAGGASTP 96
Query: 133 GPHRCTICRRSFATGQALGGHKRCH 157
HRC +C + FATGQALGGH R H
Sbjct: 97 VVHRCDMCGKVFATGQALGGHMRRH 121
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.131 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,617,412
Number of extensions: 285812
Number of successful extensions: 1049
Number of sequences better than 1.0e-10: 16
Number of HSP's gapped: 1020
Number of HSP's successfully gapped: 16
Length of query: 220
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 123
Effective length of database: 11,971,043
Effective search space: 1472438289
Effective search space used: 1472438289
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)